CmoCh04G026830 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G026830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	amino acid transporter AVT1C-like
Location	Cmo_Chr04: 19535225 .. 19536326 (+)
RNA-Seq Expression	CmoCh04G026830
Synteny	CmoCh04G026830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAATTATAAAGAATATTCATGAGAAAAACAGAAATAAAGAGAGTCCACAGAAGGAAGAAGAAGCACGGATCGACAGACTTCACGATTCTCTCTCCCCAGGTTTGACATTTTTCCCTCTCTTTTTTTGCTTTTCACAAAACTTCATTATCAGATTTGATTCTTTCAATGCCGTTTCTTGTCTTGAACTTTCTGTAGGGCTCGTGATCTGTGTGAAATCGAACGTGATTTTGCTTCTGTTTTTTGTTTTTTCATTTTTAGTTACGTGAACTTCGGATTGGCGTTCGAATTTCAATTCATTTTCTATTTACCATAGCCTATAAGTATAATTTCTCGGCAGCCAAACAGTGTTCGGATACTTCAGATTTTCAGACACGATTAGAATTATAATTTTGAATTGATGTCAATTTGTAGCTTCTCGTTTTACAGTCATTTTTAGGCGGATTTCGTGGATTCTACTTGGAAAAATTGATTAAATAATGGTAATCATGATTTGATCGACGTTTTTGGCGCCTTAATTCTGATGTTTTCACTGATTATTTATTTGTTTGTTATTCCGTTTTCGGCGATTCAAGCTACTGGAAAAGGATTGGCATGTGTTTAATTATATCTGAAACTTTGTTTCTCTATCTTTTCTCTCTGCTTTGGATCTGTACTTTGTGGTGTACTTGATTGAGACTGATTAATTCTCAGTTGAAGGAACGAATTGCAACAAGGAGGAATTTGAATTTTGATAAGAAAATGAAGAACTCTGTGTCGGACCGAAGTTTTTACATCGAAAGTTCTGACGACGAAGATCTAGAAAAGGAACTCGACAATGGCGAAGACAATGGAAACGAATCGGATTCTTCCGGCTTATCGATGAATAATCAGAATCATAAACAATCAAGTTCTTACAATACCGCCGCTTGGCCTCGAAGTTACAGGTTCAGTTTCCCTCCGTTTCACCTCTTTCGTTCTTCATTCTGCAGATTTTATCCTTCCATTTCTTCTGCTTCAAATCTCCTTCGCCTAATAGTTAGATTAGAATCATTGGTGATTCACTTGAAAATTGAAATCACGAAAGTAAAATTTCCAGCGGGAATTTTGTTTTTCTAG

mRNA sequence

ATGGCTGAAATTATAAAGAATATTCATGAGAAAAACAGAAATAAAGAGAGTCCACAGAAGGAAGAAGAAGCACGGATCGACAGACTTCACGATTCTCTCTCCCCAGGGCTCGTGATCTGTGTGAAATCGAACTTACGTGAACTTCGGATTGGCTTGAAGGAACGAATTGCAACAAGGAGGAATTTGAATTTTGATAAGAAAATGAAGAACTCTGTGTCGGACCGAAGTTTTTACATCGAAAGTTCTGACGACGAAGATCTAGAAAAGGAACTCGACAATGGCGAAGACAATGGAAACGAATCGGATTCTTCCGGCTTATCGATGAATAATCAGAATCATAAACAATCAAGTTCTTACAATACCGCCGCTTGGCCTCGAAGTTACAGGTTCAGTTTCCCTCCGTTTCACCTCTTTCGTTCTTCATTCTGCAGATTTTATCCTTCCATTTCTTCTGCTTCAAATCTCCTTCGCCTAATAGTTAGATTAGAATCATTGGTGATTCACTTGAAAATTGAAATCACGAAAGTAAAATTTCCAGCGGGAATTTTGTTTTTCTAG

Coding sequence (CDS)

ATGGCTGAAATTATAAAGAATATTCATGAGAAAAACAGAAATAAAGAGAGTCCACAGAAGGAAGAAGAAGCACGGATCGACAGACTTCACGATTCTCTCTCCCCAGGGCTCGTGATCTGTGTGAAATCGAACTTACGTGAACTTCGGATTGGCTTGAAGGAACGAATTGCAACAAGGAGGAATTTGAATTTTGATAAGAAAATGAAGAACTCTGTGTCGGACCGAAGTTTTTACATCGAAAGTTCTGACGACGAAGATCTAGAAAAGGAACTCGACAATGGCGAAGACAATGGAAACGAATCGGATTCTTCCGGCTTATCGATGAATAATCAGAATCATAAACAATCAAGTTCTTACAATACCGCCGCTTGGCCTCGAAGTTACAGGTTCAGTTTCCCTCCGTTTCACCTCTTTCGTTCTTCATTCTGCAGATTTTATCCTTCCATTTCTTCTGCTTCAAATCTCCTTCGCCTAATAGTTAGATTAGAATCATTGGTGATTCACTTGAAAATTGAAATCACGAAAGTAAAATTTCCAGCGGGAATTTTGTTTTTCTAG

Protein sequence

MAEIIKNIHEKNRNKESPQKEEEARIDRLHDSLSPGLVICVKSNLRELRIGLKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSFPPFHLFRSSFCRFYPSISSASNLLRLIVRLESLVIHLKIEITKVKFPAGILFF

Homology

[Close]

BLAST of CmoCh04G026830 vs. ExPASy Swiss-Prot
Match: F4JE35 (Amino acid transporter AVT1B OS=Arabidopsis thaliana OX=3702 GN=AVT1B PE=3 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 7.9e-04
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 68  MKNSVSDRSFYIESSDDEDLEKEL-DNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPR 127
           M +S SD+S YIES D +D  K L D+ +D+G  SD+S     NQ+H   +S  + AWP+
Sbjct: 1   MNHSTSDQSLYIESDDGDDERKHLSDDEDDDGTLSDTSDAYNQNQHHLSKASPYSTAWPK 60

Query: 128 SYRFSFPPF 136
           SYR S   F
Sbjct: 61  SYRQSIDMF 69

[Close]

BLAST of CmoCh04G026830 vs. ExPASy TrEMBL
Match: A0A6J1H171 (amino acid transporter AVT1C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459494 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 9.3e-32
Identity = 90/122 (73.77%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 52  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQ 111
           LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQ
Sbjct: 28  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQ 87

Query: 112 NHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC------RFYPSISSASNLLR 160
           NHKQSSSYNTAAWPRSYR S         P    F SSF       RF P   S S +  
Sbjct: 88  NHKQSSSYNTAAWPRSYRKSIDMLGSVPSPSLTRFGSSFLSSSLTRRFTPEAFSTSIIKP 147

[Close]

BLAST of CmoCh04G026830 vs. ExPASy TrEMBL
Match: A0A6J1H2S5 (amino acid transporter AVT1C-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459494 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 9.3e-32
Identity = 90/122 (73.77%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 52  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQ 111
           LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQ
Sbjct: 28  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQ 87

Query: 112 NHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC------RFYPSISSASNLLR 160
           NHKQSSSYNTAAWPRSYR S         P    F SSF       RF P   S S +  
Sbjct: 88  NHKQSSSYNTAAWPRSYRKSIDMLGSVPSPSLTRFGSSFLSSSLTRRFTPEAFSTSIIKP 147

[Close]

BLAST of CmoCh04G026830 vs. ExPASy TrEMBL
Match: A0A6J1JPR1 (amino acid transporter AVT1C-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487215 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.7e-22
Identity = 67/87 (77.01%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           MKNSVSDRSFYIESSDDEDLEKELDNGED+GNESDSSGLSMNNQNHKQSSSYNT AWP+S
Sbjct: 1   MKNSVSDRSFYIESSDDEDLEKELDNGEDDGNESDSSGLSMNNQNHKQSSSYNTTAWPKS 60

Query: 128 YRFSFPPFHLFRS-SFCRFYPSISSAS 154
           YR S        S S  RF  S  S+S
Sbjct: 61  YRQSIDMLGSVHSPSLTRFGSSFLSSS 87

[Close]

BLAST of CmoCh04G026830 vs. ExPASy TrEMBL
Match: A0A6J1JRP7 (amino acid transporter AVT1C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487215 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.7e-22
Identity = 67/87 (77.01%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           MKNSVSDRSFYIESSDDEDLEKELDNGED+GNESDSSGLSMNNQNHKQSSSYNT AWP+S
Sbjct: 1   MKNSVSDRSFYIESSDDEDLEKELDNGEDDGNESDSSGLSMNNQNHKQSSSYNTTAWPKS 60

Query: 128 YRFSFPPFHLFRS-SFCRFYPSISSAS 154
           YR S        S S  RF  S  S+S
Sbjct: 61  YRQSIDMLGSVHSPSLTRFGSSFLSSS 87

[Close]

BLAST of CmoCh04G026830 vs. ExPASy TrEMBL
Match: A0A5A7T108 (Vacuolar amino acid transporter 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00570 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 59/93 (63.44%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           MKNSVSDRSFYIESSDDEDLEKE+DN  D+GNESDSSG S +NQNH Q SSY TAAWP+S
Sbjct: 1   MKNSVSDRSFYIESSDDEDLEKEIDN--DDGNESDSSGSSADNQNHNQPSSYTTAAWPQS 60

Query: 128 YRFSF-------PPFHLFRSSFCRFYPSISSAS 154
           YRF+F       P F +F         S+ S S
Sbjct: 61  YRFAFSSSSQLLPSFSIFLRQSIDMLGSVHSPS 91

[Close]

BLAST of CmoCh04G026830 vs. NCBI nr
Match: KAG7032984.1 (Amino acid transporter AVT1B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.3 bits (495), Expect = 4.7e-46
Identity = 122/169 (72.19%), Postives = 126/169 (74.56%), Query Frame = 0


Query: 1   MAEIIKNIHEKNRNKESPQKEEEARIDRLHDSLSPGLV--ICV----KSNLRELRIGLKE 60
           M+EIIKNIHEKNRNK     E     DR     S   V  +C      ++LRELRI LKE
Sbjct: 1   MSEIIKNIHEKNRNK-GESTEGRGTTDRQSSRFSLPRVRDLCEIERDFASLRELRIDLKE 60

Query: 61  RIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHK 120
           RI TRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHK
Sbjct: 61  RITTRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHK 120

Query: 121 QSSSYNTAAWPRSYRFSFPPFHLFRSSFCRFYPSISSASNLLRLIVRLE 164
           QSSSYNTAAWPRSY               RFYPSISSASNLLRLIVRLE
Sbjct: 121 QSSSYNTAAWPRSY---------------RFYPSISSASNLLRLIVRLE 153

[Close]

BLAST of CmoCh04G026830 vs. NCBI nr
Match: XP_022958205.1 (amino acid transporter AVT1C-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-31
Identity = 90/122 (73.77%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 52  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQ 111
           LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQ
Sbjct: 28  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQ 87

Query: 112 NHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC------RFYPSISSASNLLR 160
           NHKQSSSYNTAAWPRSYR S         P    F SSF       RF P   S S +  
Sbjct: 88  NHKQSSSYNTAAWPRSYRKSIDMLGSVPSPSLTRFGSSFLSSSLTRRFTPEAFSTSIIKP 147

[Close]

BLAST of CmoCh04G026830 vs. NCBI nr
Match: XP_022958197.1 (amino acid transporter AVT1C-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-31
Identity = 90/122 (73.77%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 52  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQ 111
           LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQ
Sbjct: 28  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQ 87

Query: 112 NHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC------RFYPSISSASNLLR 160
           NHKQSSSYNTAAWPRSYR S         P    F SSF       RF P   S S +  
Sbjct: 88  NHKQSSSYNTAAWPRSYRKSIDMLGSVPSPSLTRFGSSFLSSSLTRRFTPEAFSTSIIKP 147

[Close]

BLAST of CmoCh04G026830 vs. NCBI nr
Match: XP_023539600.1 (amino acid transporter AVT1C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143.7 bits (361), Expect = 1.6e-30
Identity = 88/122 (72.13%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 52  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQ 111
           LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGED+GNESDSSGLSMNNQ
Sbjct: 28  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDDGNESDSSGLSMNNQ 87

Query: 112 NHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC------RFYPSISSASNLLR 160
           NHKQSSSYNTAAWP+SYR S         P    F SSF       RF P   S S +  
Sbjct: 88  NHKQSSSYNTAAWPKSYRKSIDMLGSVPSPSLTRFGSSFLSSSLTRRFTPEAFSTSIIKP 147

[Close]

BLAST of CmoCh04G026830 vs. NCBI nr
Match: KAG6602303.1 (Amino acid transporter AVT1C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-22
Identity = 74/106 (69.81%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 68  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 127
           MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS
Sbjct: 1   MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRS 60

Query: 128 YRFSF--------PPFHLFRSSFC------RFYPSISSASNLLRLI 160
           YR S         P    F SSF       RF P   S S +  L+
Sbjct: 61  YRKSIDMLGSVPSPSLTRFGSSFLSSSLTRRFTPEAFSTSIIKPLL 106

[Close]

BLAST of CmoCh04G026830 vs. TAIR 10
Match: AT3G54830.1 (Transmembrane amino acid transporter family protein )

HSP 1 Score: 45.4 bits (106), Expect = 5.6e-05
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 68  MKNSVSDRSFYIESSDDEDLEKEL-DNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPR 127
           M +S SD+S YIES D +D  K L D+ +D+G  SD+S     NQ+H   +S  + AWP+
Sbjct: 1   MNHSTSDQSLYIESDDGDDERKHLSDDEDDDGTLSDTSDAYNQNQHHLSKASPYSTAWPK 60

Query: 128 SYRFSFPPF 136
           SYR S   F
Sbjct: 61  SYRQSIDMF 69

The following BLAST results are available for this feature:

BLAST of CmoCh04G026830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JE35	7.9e-04	44.93	Amino acid transporter AVT1B OS=Arabidopsis thaliana OX=3702 GN=AVT1B PE=3 SV=2	[more]

BLAST of CmoCh04G026830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H171	9.3e-32	73.77	amino acid transporter AVT1C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1H2S5	9.3e-32	73.77	amino acid transporter AVT1C-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JPR1	8.7e-22	77.01	amino acid transporter AVT1C-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1JRP7	8.7e-22	77.01	amino acid transporter AVT1C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A5A7T108	1.4e-16	63.44	Vacuolar amino acid transporter 1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of CmoCh04G026830 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032984.1	4.7e-46	72.19	Amino acid transporter AVT1B, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022958205.1	1.9e-31	73.77	amino acid transporter AVT1C-like isoform X2 [Cucurbita moschata]	[more]
XP_022958197.1	1.9e-31	73.77	amino acid transporter AVT1C-like isoform X1 [Cucurbita moschata]	[more]
XP_023539600.1	1.6e-30	72.13	amino acid transporter AVT1C-like [Cucurbita pepo subsp. pepo]	[more]
KAG6602303.1	1.6e-22	69.81	Amino acid transporter AVT1C, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh04G026830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54830.1	5.6e-05	44.93	Transmembrane amino acid transporter family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G026830.1	CmoCh04G026830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006865	amino acid transport
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015293	symporter activity