CmoCh04G026000 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G026000
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 18991499 .. 18992202 (+)
RNA-Seq ExpressionCmoCh04G026000
SyntenyCmoCh04G026000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATGCTTTTTGGTGGTGCAGGTGAAAACATAGATGTAGATGCCTCTGACATTCCAAACTTTACAGGCTTATCCTCTTATTCTGGTTTGTTTTTCTAATTCGGTTCGACTTTACGTTCTTGACTAGAAAGCCTAGAGAGTTGCGGAACAGGATAAACTAGATTTCATTACAGTTAGACTTATATAAGAAAGGAAATGATATTGTGCTCGACTGAACAAAAAAAAGAACCAAGTTCTAACTTCCTATTTGAACTTCCTGTGCTTGAAAATTTGTTGCCTCAGCTATTTCTCCTACAGAATGATCTCGATACAATGAAATAAAGAGACTGTAGTCTCAGATTATAATACTTCCATAGTCGCCATATCAGTTCTTACTGCTGACTCAAACATTAATTGCTTTGTTCTTTGCTGCAAATTCCTCCAGATTGAGTTTTTGCTCAATTCAATTGGATGGAACATGATAATATTTCCCTTTACACATGCATCTGTAGACAGTTGGACATGACTCCGCAACAGAGCATTTGAAGCTCACCATCACCCTTTTGCACGGAAAACATGGTCCACATGCATGGGAGCAGTCTGGGAGGCTGGATCCTGTAGGGTATAACTCCATACCAAGTACTTCTTTAGCCTTTTCCTGCACAGGCACGCATGACAAAGAAACTGAATGATGATTTCTCTTTTGCAGTGAATTTCTTTAA

mRNA sequence

ATGGATATGCTTTTTGGTGGTGCAGGTGAAAACATAGATGTAGATGCCTCTGACATTCCAAACTTTACAGGCTTATCCTCTTATTCTGTTGGACATGACTCCGCAACAGAGCATTTGAAGCTCACCATCACCCTTTTGCACGGAAAACATGGTCCACATGCATGGGAGCAGTCTGGGAGGCTGGATCCTGTAGGTGAATTTCTTTAA

Coding sequence (CDS)

ATGGATATGCTTTTTGGTGGTGCAGGTGAAAACATAGATGTAGATGCCTCTGACATTCCAAACTTTACAGGCTTATCCTCTTATTCTGTTGGACATGACTCCGCAACAGAGCATTTGAAGCTCACCATCACCCTTTTGCACGGAAAACATGGTCCACATGCATGGGAGCAGTCTGGGAGGCTGGATCCTGTAGGTGAATTTCTTTAA

Protein sequence

MDMLFGGAGENIDVDASDIPNFTGLSSYSVGHDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVGEFL
Homology
[Close]
BLAST of CmoCh04G026000 vs. NCBI nr
Match: KAG6602224.1 (Protein phosphatase 1 regulatory subunit INH3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.7 bits (221), Expect = 1.0e-14
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 29  SVGHDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVGEFL 69
           +VGHDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVGEFL
Sbjct: 124 TVGHDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVGEFL 163

[Close]
BLAST of CmoCh04G026000 vs. NCBI nr
Match: KAG7032905.1 (hypothetical protein SDJN02_06955, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0 

Query: 25 LSSYSVGHDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVG 66
          L + +VGHDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVG
Sbjct: 19 LFALTVGHDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVG 59

[Close]
BLAST of CmoCh04G026000 vs. NCBI nr
Match: KAE8646651.1 (hypothetical protein Csa_005292 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 8.1e-12
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0 

Query: 29 SVGHDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVG 66
          +VG DSATEHLKLTITLLHGKHGPHAWEQSGRLDPVG
Sbjct: 34 TVGQDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVG 70

The following BLAST results are available for this feature:
BLAST of CmoCh04G026000 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026000 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G026000 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602224.11.0e-1497.50Protein phosphatase 1 regulatory subunit INH3, partial [Cucurbita argyrosperma s... [more]
KAG7032905.15.6e-1390.24hypothetical protein SDJN02_06955, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAE8646651.18.1e-1294.59hypothetical protein Csa_005292 [Cucumis sativus][more]
BLAST of CmoCh04G026000 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G026000.1CmoCh04G026000.1mRNA