CmoCh04G025860 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G025860
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DEAD-box ATP-dependent RNA helicase 39-like
Location	Cmo_Chr04: 18906578 .. 18909757 (-)
RNA-Seq Expression	CmoCh04G025860
Synteny	CmoCh04G025860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGCCCCAAAATCAAATTTAATAAATTGACTAAAAATGAACGATAAATATCGGTAACTTACGAAATTTGAAATACGTGACCTAACAATTGAACCAGAGGCAGGTTGAACGGCCGAGCAGCACCGCCATGGGAAGTAGAAGGAAAGCTCTTCTCGAGCTCTACCACTATGTGAACAGCCTCTCATGTCCAACGAAAGGGAACGTTTTCCACAATCCGGTAAACTCCACGAACGCTTTCTTAGCTTCTCGATATTTTTCCTCTTCCTTCTCCAGAACCTTAACAACGGAGAATGATCGACCGCCACGAACGGACAGAGAAGCGATGCTTCTTGAAAAGTTCAGGAACAGGAAACTCAAAGGCTCGTCGAATATCTCGAGAGAATCATTGAGTTCTAACTCTGCTGTGAAAGGGAGTGGGAACGGAGGTGAGAAGGTGATGACAGGTTTCAAGGAGTTGGGGCTTTATAATGAAGTGGCGGAGGCTGCGGAAGGGATGGGATTCTTTGTTCCTTCTGAGTTGCATTGTGTAGGGATTCCAGCTCTTTTGGAAGGGAAGAATGTGGTATTGGGATCTCTTTATGGACCAGAAAGGGCTTTAGCTTACTTGTTGCCTCTCATTCAGGTTCTTCTTCTTTTATCAATTTGAATCTAATTATCCTTTGGCACTTAATGAATTTATGATGGCGTTGAGTTCATAATATCATTCAAAAGTGTATTTGATGGAGATGTCTGTTACTGTTTGACCATTTCTTGATTAGAACAGATTAAAAGTATAGGCTACTCTAATTTTAAATATGTTTTGGAACATGTGCATTTGAATTTTGTGTGCTTCAATATTAATTTGACTAATGAGGCTCCATATGTGGAAGATTAATATGATATAAGGAAGAAATTACATTGGAGATCCTGGACCTTTGTTCAGTTGAACGACATATAGATGGAAATTTGAACTTTCAACCGTTTCGCTTTTAATCGATGATATAATGTGATGAGATCCCACGTCGGTTGGGAGGAGAACAAAACATTTTTTATAAGAGTGTGGAAACCTCTCCCTAGCAGACGTATTTTAAAAACCTAGAGGGGAAATGCCAAAGAGAACAATATTTGTTAGCGGTGGGATTGGACTGTTACAAATGGTATCAAAGCCAGACACTAGGTGATGTGCCAGCGAGGAGGCTAAGCTCCTAATGGGGTGGACACAATGCGATGTGCCAGCAATGACGCTGGACCTCGAAGGGGGTGTATTGGGAGGTCCCCACATTGATTGGAGAAGAGAACGATTGTCAGCGAGGACGCTGTACTTAGAAGGTGAGTGGATTGTGAAATCTCACATTGATTGGGGAGGAAAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTTCCTAGTAGACGCATTTTAAAAACTTTGAGGGAAGCCTGAAAGCGAAAGTCCAAAGAGATTTTCACTCTCCTCACCGTGCCTTTTATTTGATTTGCATTTGGAATGTTTTAATATTCCAAATTCCATCTAGATTTGAATAAAGTACAGAATTAAAATGCTTGTTCACTTTCATGATCTTTTCCCCCATTGTTATGTCTACAATTGGCTCTTATTAGAATCTAAAAAGAGATGCAAAAACAAATGGTGTAAGGTCCAAGCATCCTCGAGCCTTCGTTATGTGCTCAACCACGGAGCTATCTGACGAGGTATCGCTTTCAGACCTTCATGAATAAGATGTTAAGTCCAACTACAGTTTGGTTGACATAAGAATATCACCCTGCAGGTGTTTCAGATGGCGAAGTTCATCAGCAATTACAAGCAGTTGAAAACTGCAAAGGACAATGGTTTTGGTCAATTAGAACTTCAGAATGGTGCATCGGATGTCTCGATCGGCCTGTTAATCGGCACCCCTAATGAGGTCTCTGAACTCATTGAAGACGGGAGCGTGGTTTCGGATGAAATCAAGTACTTGGTATGCTGTCAACTATTCATACTACATCTCTAAAAATAAATTTTATCTGAAGTTTTCTTGGACAGTAATTGAAAAGAATAAACTGTTCCTTGCTCTGTTTAAGCCGCAGATATCACATCTTCTAGGATTGACCCTTCTTATTTTTGATAATCTGCTATAATTTTCAGTTATTTCTGCTTAAAATATGCTAGGTTGCTAATTTAGATACGAAACTGTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTAATAAGGATGTGGAAACATTCCCCTAGCAGACGCGTTTAAAAGCCTTGAAAGGAAGCCCGAAAGGGAAAGCCTAAAGAGGACAATATCTGCTAGTAGCGGATCTAGGTCGTTAAAATTGGTATCAGAGCCAGACACCGGACGATGTGCCATCCTTCTCGCTGTTCCCCGAAGGGGGTAGACACGAGGCAGTGTGCCAGTAAGGACACTGGGCCCCAAAGGAGGGTGGATTTTGGGGCGGTCTCACATCGATTGGAGGAAGGAAAGAGTGCCAGCGAGGACGCTGGGCCCCGAAGGGGGTGGATTGTGATGTCTCACATTGGTTGGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTGGCAGACGCGTTTTAAAGCCTTGAAAGGAAGCCCAAAGAGGGACAATATTTTCTAGCAGTGGATCTAGGTCGTTACAGAAATTATACCGATATCTGGGTTCATATTCTCAGGAAACCATCAAGATTGTGATTTTTTATATTGTTCTTATGAAACAGGTATTGGATGAGTTGGACACAATGTTCGATCTAGGCTTTGGCCCCAACATTAAAAAGATTTTAACTTCAGTAAAACAATCTACATCAAGACACTGCAATCAAAAGTGTCAATCTGTTGTGGTCACCTCGACGTTGATTAAGGTTATTTACTCTACTTTGCCTCGTTACCAGATATAAAATTTTGTGCATCGATACACACGGGTTGGTTCATGAAACTTTTTCTCCGAGTTAATAATTTGTCGTATAAATTATAGATGTTGCACGAACAACATTCGTCCCTTGTGGAGTCTCTTAAGCGAAGCGATGGAGGAGAGATTGCTGCTATGCTTCTTGAAATCGAGGAAGAAGAGGCGTTCCATCTTATGGAATCTCCAGATACTCTGAAATGTAAACTTGCGGATGCGGTCGAGTCACTTCGTGTGTCCACAAATAGAACTTAA

mRNA sequence

TTTCGCCCCAAAATCAAATTTAATAAATTGACTAAAAATGAACGATAAATATCGGTAACTTACGAAATTTGAAATACGTGACCTAACAATTGAACCAGAGGCAGGTTGAACGGCCGAGCAGCACCGCCATGGGAAGTAGAAGGAAAGCTCTTCTCGAGCTCTACCACTATGTGAACAGCCTCTCATGTCCAACGAAAGGGAACGTTTTCCACAATCCGGTAAACTCCACGAACGCTTTCTTAGCTTCTCGATATTTTTCCTCTTCCTTCTCCAGAACCTTAACAACGGAGAATGATCGACCGCCACGAACGGACAGAGAAGCGATGCTTCTTGAAAAGTTCAGGAACAGGAAACTCAAAGGCTCGTCGAATATCTCGAGAGAATCATTGAGTTCTAACTCTGCTGTGAAAGGGAGTGGGAACGGAGGTGAGAAGGTGATGACAGGTTTCAAGGAGTTGGGGCTTTATAATGAAGTGGCGGAGGCTGCGGAAGGGATGGGATTCTTTGTTCCTTCTGAGTTGCATTGTGTAGGGATTCCAGCTCTTTTGGAAGGGAAGAATGTGGTATTGGGATCTCTTTATGGACCAGAAAGGGCTTTAGCTTACTTGTTGCCTCTCATTCAGAATCTAAAAAGAGATGCAAAAACAAATGGTGTAAGGTCCAAGCATCCTCGAGCCTTCGTTATGTGCTCAACCACGGAGCTATCTGACGAGGTGTTTCAGATGGCGAAGTTCATCAGCAATTACAAGCAGTTGAAAACTGCAAAGGACAATGGTTTTGGTCAATTAGAACTTCAGAATGGTGCATCGGATGTCTCGATCGGCCTGTTAATCGGCACCCCTAATGAGGTCTCTGAACTCATTGAAGACGGGAGCGTGGTTTCGGATGAAATCAAGTACTTGGTATTGGATGAGTTGGACACAATGTTCGATCTAGGCTTTGGCCCCAACATTAAAAAGATTTTAACTTCAGTAAAACAATCTACATCAAGACACTGCAATCAAAAGTGTCAATCTGTTGTGGTCACCTCGACGTTGATTAAGATGTTGCACGAACAACATTCGTCCCTTGTGGAGTCTCTTAAGCGAAGCGATGGAGGAGAGATTGCTGCTATGCTTCTTGAAATCGAGGAAGAAGAGGCGTTCCATCTTATGGAATCTCCAGATACTCTGAAATGTAAACTTGCGGATGCGGTCGAGTCACTTCGTGTGTCCACAAATAGAACTTAA

Coding sequence (CDS)

ATGGGAAGTAGAAGGAAAGCTCTTCTCGAGCTCTACCACTATGTGAACAGCCTCTCATGTCCAACGAAAGGGAACGTTTTCCACAATCCGGTAAACTCCACGAACGCTTTCTTAGCTTCTCGATATTTTTCCTCTTCCTTCTCCAGAACCTTAACAACGGAGAATGATCGACCGCCACGAACGGACAGAGAAGCGATGCTTCTTGAAAAGTTCAGGAACAGGAAACTCAAAGGCTCGTCGAATATCTCGAGAGAATCATTGAGTTCTAACTCTGCTGTGAAAGGGAGTGGGAACGGAGGTGAGAAGGTGATGACAGGTTTCAAGGAGTTGGGGCTTTATAATGAAGTGGCGGAGGCTGCGGAAGGGATGGGATTCTTTGTTCCTTCTGAGTTGCATTGTGTAGGGATTCCAGCTCTTTTGGAAGGGAAGAATGTGGTATTGGGATCTCTTTATGGACCAGAAAGGGCTTTAGCTTACTTGTTGCCTCTCATTCAGAATCTAAAAAGAGATGCAAAAACAAATGGTGTAAGGTCCAAGCATCCTCGAGCCTTCGTTATGTGCTCAACCACGGAGCTATCTGACGAGGTGTTTCAGATGGCGAAGTTCATCAGCAATTACAAGCAGTTGAAAACTGCAAAGGACAATGGTTTTGGTCAATTAGAACTTCAGAATGGTGCATCGGATGTCTCGATCGGCCTGTTAATCGGCACCCCTAATGAGGTCTCTGAACTCATTGAAGACGGGAGCGTGGTTTCGGATGAAATCAAGTACTTGGTATTGGATGAGTTGGACACAATGTTCGATCTAGGCTTTGGCCCCAACATTAAAAAGATTTTAACTTCAGTAAAACAATCTACATCAAGACACTGCAATCAAAAGTGTCAATCTGTTGTGGTCACCTCGACGTTGATTAAGATGTTGCACGAACAACATTCGTCCCTTGTGGAGTCTCTTAAGCGAAGCGATGGAGGAGAGATTGCTGCTATGCTTCTTGAAATCGAGGAAGAAGAGGCGTTCCATCTTATGGAATCTCCAGATACTCTGAAATGTAAACTTGCGGATGCGGTCGAGTCACTTCGTGTGTCCACAAATAGAACTTAA

Protein sequence

MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLTTENDRPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVTSTLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLRVSTNRT

Homology

[Close]

BLAST of CmoCh04G025860 vs. ExPASy Swiss-Prot
Match: Q5VRY0 (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.2e-45
Identity = 104/268 (38.81%), Postives = 162/268 (60.45%), Query Frame = 0


Query: 52  TTENDRPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGE--------KV 111
           TT  + P    R  +LLE+ R R LKG    +           G G G +        +V
Sbjct: 52  TTAREAP---SRHELLLERLRQRHLKGVPAATPRPAQREKGRGGGGGGAQELQQKRRVEV 111

Query: 112 MTGFKELGLYNEVAEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPL 171
           +  F+ELGL  EV  A   MG   P+E+ CVG+PA+L G +VVLGS  G  + LAYLLPL
Sbjct: 112 VDSFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPL 171

Query: 172 IQNLKRDAKTNG--VRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLE 231
           +Q L+RD    G  ++ + PRA V+C T EL+++VF++AK IS++ + ++   +G  ++ 
Sbjct: 172 VQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGSRIR 231

Query: 232 LQNGASDVSIGLLIGTPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTS 291
            Q  + ++ + +++GTP  + + I+DG++V  +IKYLVLDE DTMFD GFGP+I+K L  
Sbjct: 232 PQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAP 291

Query: 292 VKQSTSRHCNQKCQSVVVTSTLIKMLHE 310
           +K   ++  +Q  Q+V+VT+T+ K + +
Sbjct: 292 LKNRAAKPGDQGFQTVLVTATMTKAVQK 316

[Close]

BLAST of CmoCh04G025860 vs. ExPASy Swiss-Prot
Match: Q56X76 (DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.9e-41
Identity = 105/289 (36.33%), Postives = 177/289 (61.25%), Query Frame = 0


Query: 42  YFSSSFSRTLTTE-NDRPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGN-- 101
           Y +++ + + TTE N   P   +  +LLE+ R R LK S+   ++  SS   V+   +  
Sbjct: 45  YSAAATTSSPTTETNVTDPDQLKHTILLERLRLRHLKESAKPPQQRPSSVVGVEEESSIR 104

Query: 102 -GGEKVMTGFKELGLYNEVAEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERAL 161
              +K++  F+ELGL  EV  A + +   VP+E+ C+GIPA++E K+VVLGS  G  + L
Sbjct: 105 KKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTL 164

Query: 162 AYLLPLIQNLKRDAKTNGVRSK--HPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDN 221
           AYLLP++Q ++ D    G ++K   PR  V+C T ELS++V+++AK IS++ + ++   +
Sbjct: 165 AYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVS 224

Query: 222 GFGQLELQNGASDVSIGLLIGTPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNI 281
           G  ++  Q  + + +I +++GTP  + + IE+G++V  +I YLVLDE DTMFD GFGP I
Sbjct: 225 GGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEI 284

Query: 282 KKILTSVKQSTSRHCNQKCQSVVVTSTL---IKMLHEQHSSLVESLKRS 322
           +K L  + Q   +  +Q  Q+V+VT+T+   ++ L ++    +E L+ S
Sbjct: 285 RKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTS 333

[Close]

BLAST of CmoCh04G025860 vs. ExPASy Swiss-Prot
Match: P42305 (ATP-dependent RNA helicase DbpA OS=Bacillus subtilis (strain 168) OX=224308 GN=dbpA PE=1 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 9.4e-17
Identity = 68/271 (25.09%), Postives = 130/271 (47.97%), Query Frame = 0


Query: 104 MTGFKELGLYNEVAEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPL 163
           M+ FK   + +++  A EG+G+  P+++    IPA LE K++V+ S  G  +  ++ +PL
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 164 IQNLKRDAKTNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQ 223
            +    D          P+A ++  T EL+ +V +    I  +K++K     G    + Q
Sbjct: 61  CELANWD-------ENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQ 120

Query: 224 NGASDVSIGLLIGTPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVK 283
                    +++GTP  V + IE G++  D + YLV+DE D M ++GF   ++ I+    
Sbjct: 121 KAELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAII---- 180

Query: 284 QSTSRHCNQKCQSVVVTSTL---IKMLHEQHSSLVESLKRSDGG----EIAAMLLEIEEE 343
               +H   +  +++ ++TL   I+ L  Q+    E ++    G     I   ++++ EE
Sbjct: 181 ----KHLPTERTTMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREE 240

Query: 344 EAFHLM------ESPDT--LKCKLADAVESL 360
             F L+      E+PD+  + C+  + V  L
Sbjct: 241 NKFSLLKDVLMTENPDSCIIFCRTKEHVNQL 256

[Close]

BLAST of CmoCh04G025860 vs. ExPASy Swiss-Prot
Match: Q12S35 (ATP-dependent RNA helicase RhlB OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=rhlB PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.7e-16
Identity = 50/182 (27.47%), Postives = 90/182 (49.45%), Query Frame = 0


Query: 107 FKELGLYNEVAEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQN 166
           F +L L+ EV +A    GF   + +  + +P LL+ K++   +  G  + +A+L+    +
Sbjct: 11  FADLPLHAEVIQALNENGFEFCTPIQALSLPVLLKAKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 167 LKRDAKTNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGA 226
           L             PRA +M  T EL+ ++ + A  ++ +  LK     G    E+Q   
Sbjct: 71  LLTTPAPQARELNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGESYEVQREV 130

Query: 227 SDVSIGLLIGTPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQST 286
            D  + +LIGT   + + +  G +  + I+ +VLDE D MFDLGF  +I+ +   +  ++
Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAS 190

Query: 287 SR 289
           SR
Sbjct: 191 SR 192

[Close]

BLAST of CmoCh04G025860 vs. ExPASy Swiss-Prot
Match: A5UDI1 (ATP-dependent RNA helicase RhlB OS=Haemophilus influenzae (strain PittEE) OX=374930 GN=rhlB PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.6e-16
Identity = 54/173 (31.21%), Postives = 90/173 (52.02%), Query Frame = 0


Query: 107 FKELGLYNEVAEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQN 166
           F +L L+  V +     GF   + +  + +P  L G++V   +  G  + +A+L     +
Sbjct: 11  FSDLSLHPIVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 167 LKRDAKTNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGA 226
           L      N +   HPRA ++ ST EL+ ++   A+F++    LKTA   G    + Q  A
Sbjct: 71  LLTHQDPN-LEYPHPRALILASTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQA 130

Query: 227 SDVSIGLLIGTPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKIL 280
            +  + +LIGT   V + ++ G +  DEI+ +VLDE D MFDLGF  +I+ +L
Sbjct: 131 IERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLL 182

[Close]

BLAST of CmoCh04G025860 vs. ExPASy TrEMBL
Match: A0A6J1H541 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucurbita moschata OX=3662 GN=LOC111460659 PE=4 SV=1)

HSP 1 Score: 708.8 bits (1828), Expect = 1.2e-200
Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0


Query: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLTTENDRPPR 60
           MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLTTENDRPPR
Sbjct: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLTTENDRPPR 60

Query: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120
           TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA
Sbjct: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120

Query: 121 EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180
           EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH
Sbjct: 121 EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180

Query: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240
           PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE
Sbjct: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240

Query: 241 VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300
           VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT
Sbjct: 241 VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300

Query: 301 STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360
           STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR
Sbjct: 301 STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360

Query: 361 VSTNRT 367
           VSTNRT
Sbjct: 361 VSTNRT 366

[Close]

BLAST of CmoCh04G025860 vs. ExPASy TrEMBL
Match: A0A6J1JT03 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucurbita maxima OX=3661 GN=LOC111487576 PE=4 SV=1)

HSP 1 Score: 673.3 bits (1736), Expect = 5.7e-190
Identity = 350/366 (95.63%), Postives = 356/366 (97.27%), Query Frame = 0


Query: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLTTENDRPPR 60
           MGSRRKALLEL HY+NSLSCPTK + FHNPV S NAFLASRYFSSSFSRT  TENDRPPR
Sbjct: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPR 60

Query: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120
           TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA
Sbjct: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120

Query: 121 EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180
           EGMGFFVPSEL CVGIPALLEGKNVVLGSLYGPERAL YLLPLIQNLKRDAK+NGVRSKH
Sbjct: 121 EGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKH 180

Query: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240
           PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFG+LELQNGASDVSIGLLIGTPNE
Sbjct: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNE 240

Query: 241 VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300
           VSELIEDGS+VSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT
Sbjct: 241 VSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300

Query: 301 STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360
           STLIKMLH+QHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR
Sbjct: 301 STLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360

Query: 361 VSTNRT 367
            STNRT
Sbjct: 361 ASTNRT 366

[Close]

BLAST of CmoCh04G025860 vs. ExPASy TrEMBL
Match: A0A6J1BZL0 (DEAD-box ATP-dependent RNA helicase 39-like OS=Momordica charantia OX=3673 GN=LOC111006682 PE=4 SV=1)

HSP 1 Score: 524.2 bits (1349), Expect = 4.2e-145
Identity = 279/370 (75.41%), Postives = 305/370 (82.43%), Query Frame = 0


Query: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRT----LTTEND 60
           MGSR KALLEL      L CPT  +    P +ST   L SR +SSSFSRT       END
Sbjct: 1   MGSRTKALLELSRRAKLLLCPTNPSTLPKPSSSTTTSLISRIYSSSFSRTSAGDTAAEND 60

Query: 61  RPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEV 120
           RPP++DR++MLLEKFR RKLKGSS I++ES SS SA        EKVMTGFKELGL NEV
Sbjct: 61  RPPQSDRDSMLLEKFRLRKLKGSSKITQESSSSTSA--------EKVMTGFKELGLCNEV 120

Query: 121 AEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGV 180
           AEA E MGFFVPSELHCVGIPALLEGKNVVLGSL GPERALAYLLP IQ+LKRD K N +
Sbjct: 121 AEAVEEMGFFVPSELHCVGIPALLEGKNVVLGSLSGPERALAYLLPFIQSLKRDGKKNDI 180

Query: 181 RSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIG 240
           RSKHPRAF++CST ELSDEVFQMAKFIS Y QLK+++DN   QLELQ G SDVSIG+L+G
Sbjct: 181 RSKHPRAFILCSTAELSDEVFQMAKFISGYGQLKSSRDNNCAQLELQEGGSDVSIGMLVG 240

Query: 241 TPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQS 300
           TP+EVSELIE+GSVV DEIKYLVLDELDTMFDLGFGPNIKKILTS+   TSRHCNQKCQS
Sbjct: 241 TPDEVSELIEEGSVVPDEIKYLVLDELDTMFDLGFGPNIKKILTSLNHYTSRHCNQKCQS 300

Query: 301 VVVTSTLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAV 360
           VVVTST+IKMLHEQHSSLVESLKR D GEIAAMLLEI+E+EAFHLMESPDT+KCKLADAV
Sbjct: 301 VVVTSTMIKMLHEQHSSLVESLKRDDAGEIAAMLLEIDEDEAFHLMESPDTMKCKLADAV 360

Query: 361 ESLRVSTNRT 367
           +SL  ST  T
Sbjct: 361 KSLHASTKGT 362

[Close]

BLAST of CmoCh04G025860 vs. ExPASy TrEMBL
Match: A0A5A7SLY8 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G003970 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 1.5e-129
Identity = 258/370 (69.73%), Postives = 292/370 (78.92%), Query Frame = 0


Query: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRT----LTTEND 60
           MGSRRKALLEL H  N L  PTK ++F N   S NA LAS + SS+FSR+       END
Sbjct: 1   MGSRRKALLELSHCANILLSPTKRSIFPNFALSANALLASPFCSSTFSRSSADGTPVEND 60

Query: 61  RPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEV 120
           +PP+++R++ LLEKFR RKLKG S IS+ S SS        NGGEKVMTGF++LGL NE+
Sbjct: 61  QPPQSNRDSTLLEKFRLRKLKGLSKISQHSSSS--------NGGEKVMTGFRQLGLCNEL 120

Query: 121 AEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGV 180
           A A E MG   PSEL C  IPA+LEGKNVVLG L GPERALAYLLPLIQNLKRD K  G 
Sbjct: 121 AGAVEEMGILAPSELDCAAIPAVLEGKNVVLGYLNGPERALAYLLPLIQNLKRDEKRYGT 180

Query: 181 RSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIG 240
           RSKHPRAFVMC T +LS+E+F MAK+ISNY+QLKT +DN  G+LELQ  ASDVSIGLLIG
Sbjct: 181 RSKHPRAFVMCPTAQLSEELFCMAKYISNYRQLKTPRDNSCGELELQKSASDVSIGLLIG 240

Query: 241 TPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQS 300
           TP+E+SELIE+GSVV DEI YLV DELD+MFDLGFGPNIKKILTSV     RHCN+KC+S
Sbjct: 241 TPDEISELIEEGSVVLDEINYLVFDELDSMFDLGFGPNIKKILTSV-----RHCNEKCRS 300

Query: 301 VVVTSTLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAV 360
           +VVTSTLIKM+HEQ SSLV+SL+  D GEIAAM+LEIEEEEAFHLMESPD LK KLAD V
Sbjct: 301 IVVTSTLIKMMHEQRSSLVKSLRCGDAGEIAAMVLEIEEEEAFHLMESPDALKSKLADVV 357

Query: 361 ESLRVSTNRT 367
           ESLR ST  T
Sbjct: 361 ESLRPSTQET 357

[Close]

BLAST of CmoCh04G025860 vs. ExPASy TrEMBL
Match: A0A1S3C4L0 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucumis melo OX=3656 GN=LOC103496581 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 1.5e-129
Identity = 258/370 (69.73%), Postives = 292/370 (78.92%), Query Frame = 0


Query: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRT----LTTEND 60
           MGSRRKALLEL H  N L  PTK ++F N   S NA LAS + SS+FSR+       END
Sbjct: 1   MGSRRKALLELSHCANILLSPTKRSIFPNFALSANALLASPFCSSTFSRSSADGTPVEND 60

Query: 61  RPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEV 120
           +PP+++R++ LLEKFR RKLKG S IS+ S SS        NGGEKVMTGF++LGL NE+
Sbjct: 61  QPPQSNRDSTLLEKFRLRKLKGLSKISQHSSSS--------NGGEKVMTGFRQLGLCNEL 120

Query: 121 AEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGV 180
           A A E MG   PSEL C  IPA+LEGKNVVLG L GPERALAYLLPLIQNLKRD K  G 
Sbjct: 121 AGAVEEMGILAPSELDCAAIPAVLEGKNVVLGYLNGPERALAYLLPLIQNLKRDEKRYGT 180

Query: 181 RSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIG 240
           RSKHPRAFVMC T +LS+E+F MAK+ISNY+QLKT +DN  G+LELQ  ASDVSIGLLIG
Sbjct: 181 RSKHPRAFVMCPTAQLSEELFCMAKYISNYRQLKTPRDNSCGELELQKSASDVSIGLLIG 240

Query: 241 TPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQS 300
           TP+E+SELIE+GSVV DEI YLV DELD+MFDLGFGPNIKKILTSV     RHCN+KC+S
Sbjct: 241 TPDEISELIEEGSVVLDEINYLVFDELDSMFDLGFGPNIKKILTSV-----RHCNEKCRS 300

Query: 301 VVVTSTLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAV 360
           +VVTSTLIKM+HEQ SSLV+SL+  D GEIAAM+LEIEEEEAFHLMESPD LK KLAD V
Sbjct: 301 IVVTSTLIKMMHEQRSSLVKSLRCGDAGEIAAMVLEIEEEEAFHLMESPDALKSKLADVV 357

Query: 361 ESLRVSTNRT 367
           ESLR ST  T
Sbjct: 361 ESLRPSTQET 357

[Close]

BLAST of CmoCh04G025860 vs. NCBI nr
Match: XP_022959642.1 (DEAD-box ATP-dependent RNA helicase 39-like [Cucurbita moschata])

HSP 1 Score: 708.8 bits (1828), Expect = 2.5e-200
Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0


Query: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLTTENDRPPR 60
           MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLTTENDRPPR
Sbjct: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLTTENDRPPR 60

Query: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120
           TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA
Sbjct: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120

Query: 121 EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180
           EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH
Sbjct: 121 EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180

Query: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240
           PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE
Sbjct: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240

Query: 241 VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300
           VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT
Sbjct: 241 VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300

Query: 301 STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360
           STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR
Sbjct: 301 STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360

Query: 361 VSTNRT 367
           VSTNRT
Sbjct: 361 VSTNRT 366

[Close]

BLAST of CmoCh04G025860 vs. NCBI nr
Match: KAG6602207.1 (DEAD-box ATP-dependent RNA helicase 39, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 696.8 bits (1797), Expect = 9.9e-197
Identity = 359/366 (98.09%), Postives = 361/366 (98.63%), Query Frame = 0


Query: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLTTENDRPPR 60
           MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASR+FS  FSRT TTENDRPPR
Sbjct: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRHFSYPFSRTFTTENDRPPR 60

Query: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120
           TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEA 
Sbjct: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAV 120

Query: 121 EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180
           EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH
Sbjct: 121 EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180

Query: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240
           PRAFVMCSTTELSDEVFQMAKFISNY+QLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE
Sbjct: 181 PRAFVMCSTTELSDEVFQMAKFISNYRQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240

Query: 241 VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300
           VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT
Sbjct: 241 VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300

Query: 301 STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360
           STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR
Sbjct: 301 STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360

Query: 361 VSTNRT 367
            STNRT
Sbjct: 361 ASTNRT 366

[Close]

BLAST of CmoCh04G025860 vs. NCBI nr
Match: XP_022990794.1 (DEAD-box ATP-dependent RNA helicase 39-like [Cucurbita maxima])

HSP 1 Score: 673.3 bits (1736), Expect = 1.2e-189
Identity = 350/366 (95.63%), Postives = 356/366 (97.27%), Query Frame = 0


Query: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLTTENDRPPR 60
           MGSRRKALLEL HY+NSLSCPTK + FHNPV S NAFLASRYFSSSFSRT  TENDRPPR
Sbjct: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPR 60

Query: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120
           TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA
Sbjct: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120

Query: 121 EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180
           EGMGFFVPSEL CVGIPALLEGKNVVLGSLYGPERAL YLLPLIQNLKRDAK+NGVRSKH
Sbjct: 121 EGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKH 180

Query: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240
           PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFG+LELQNGASDVSIGLLIGTPNE
Sbjct: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNE 240

Query: 241 VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300
           VSELIEDGS+VSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT
Sbjct: 241 VSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300

Query: 301 STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360
           STLIKMLH+QHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR
Sbjct: 301 STLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360

Query: 361 VSTNRT 367
            STNRT
Sbjct: 361 ASTNRT 366

[Close]

BLAST of CmoCh04G025860 vs. NCBI nr
Match: XP_023512464.1 (DEAD-box ATP-dependent RNA helicase 39-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023512472.1 DEAD-box ATP-dependent RNA helicase 39-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 639.0 bits (1647), Expect = 2.4e-179
Identity = 335/356 (94.10%), Postives = 337/356 (94.66%), Query Frame = 0


Query: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLTTENDRPPR 60
           MGSRRKALLELYHY NSLSCPTKGNVFHNPV STNAFLASR+FSSSFSRT TTENDRPPR
Sbjct: 1   MGSRRKALLELYHYANSLSCPTKGNVFHNPVISTNAFLASRHFSSSFSRTFTTENDRPPR 60

Query: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120
           TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLY+EVAEAA
Sbjct: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYDEVAEAA 120

Query: 121 EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180
           EGMGFFVPS LHCVGIPALLEGKNVVLGSLY PERALAYLLPLIQNLKRDAKTNGVRSKH
Sbjct: 121 EGMGFFVPSALHCVGIPALLEGKNVVLGSLYRPERALAYLLPLIQNLKRDAKTNGVRSKH 180

Query: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240
           PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE
Sbjct: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240

Query: 241 VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300
           VSELIEDGSVVSDEIKYLV DELD MFDLGFGPNIKKILTSVKQSTSR CNQKCQSVV T
Sbjct: 241 VSELIEDGSVVSDEIKYLVFDELDRMFDLGFGPNIKKILTSVKQSTSRPCNQKCQSVVAT 300

Query: 301 STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAV 357
           STLIKMLHEQHSSLV         EIAAMLLEIEEEE FHLMESPDTLKCKLADAV
Sbjct: 301 STLIKMLHEQHSSLV---------EIAAMLLEIEEEEPFHLMESPDTLKCKLADAV 347

[Close]

BLAST of CmoCh04G025860 vs. NCBI nr
Match: KAG7032889.1 (DEAD-box ATP-dependent RNA helicase 39 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 580.1 bits (1494), Expect = 1.3e-161
Identity = 311/366 (84.97%), Postives = 314/366 (85.79%), Query Frame = 0


Query: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLTTENDRPPR 60
           MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASR+FS  FSRT TTENDRPPR
Sbjct: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRHFSYPFSRTFTTENDRPPR 60

Query: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120
           TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEA 
Sbjct: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAV 120

Query: 121 EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180
           E MGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH
Sbjct: 121 EEMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180

Query: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240
           PRAFVMCSTTELSDEVFQMAKFISNY+QLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE
Sbjct: 181 PRAFVMCSTTELSDEVFQMAKFISNYRQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240

Query: 241 VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300
           VSELIEDGSVVSDEIKYL                                          
Sbjct: 241 VSELIEDGSVVSDEIKYL------------------------------------------ 300

Query: 301 STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360
                MLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLA+AVESLR
Sbjct: 301 -----MLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLANAVESLR 319

Query: 361 VSTNRT 367
           VSTNRT
Sbjct: 361 VSTNRT 319

[Close]

BLAST of CmoCh04G025860 vs. TAIR 10
Match: AT4G09730.1 (RH39 )

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-42
Identity = 105/289 (36.33%), Postives = 177/289 (61.25%), Query Frame = 0


Query: 42  YFSSSFSRTLTTE-NDRPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGN-- 101
           Y +++ + + TTE N   P   +  +LLE+ R R LK S+   ++  SS   V+   +  
Sbjct: 45  YSAAATTSSPTTETNVTDPDQLKHTILLERLRLRHLKESAKPPQQRPSSVVGVEEESSIR 104

Query: 102 -GGEKVMTGFKELGLYNEVAEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERAL 161
              +K++  F+ELGL  EV  A + +   VP+E+ C+GIPA++E K+VVLGS  G  + L
Sbjct: 105 KKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTL 164

Query: 162 AYLLPLIQNLKRDAKTNGVRSK--HPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDN 221
           AYLLP++Q ++ D    G ++K   PR  V+C T ELS++V+++AK IS++ + ++   +
Sbjct: 165 AYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVS 224

Query: 222 GFGQLELQNGASDVSIGLLIGTPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNI 281
           G  ++  Q  + + +I +++GTP  + + IE+G++V  +I YLVLDE DTMFD GFGP I
Sbjct: 225 GGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEI 284

Query: 282 KKILTSVKQSTSRHCNQKCQSVVVTSTL---IKMLHEQHSSLVESLKRS 322
           +K L  + Q   +  +Q  Q+V+VT+T+   ++ L ++    +E L+ S
Sbjct: 285 RKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTS 333

[Close]

BLAST of CmoCh04G025860 vs. TAIR 10
Match: AT2G42520.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-15
Identity = 50/190 (26.32%), Postives = 92/190 (48.42%), Query Frame = 0


Query: 93  VKGSGNGGEKVMTGFKELGLYNEVAEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYG 152
           ++ SG+     +  F E+ L   +        +  P+ +    IP LLEG++++  +  G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206

Query: 153 PERALAYLLPLIQNLKRD---AKTNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQL 212
             +  A+  P+I  + +D    +  G R+ +P A ++  T EL+ ++   AK  S    +
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266

Query: 213 KTAKDNGFGQLELQNGASDVSIGLLIGTPNEVSELIEDGSVVSDEIKYLVLDELDTMFDL 272
           K     G   +  Q    +  + +L+ TP  +++L+E   V    I++L LDE D M D+
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 326

Query: 273 GFGPNIKKIL 280
           GF P I+KI+
Sbjct: 327 GFEPQIRKIV 336

[Close]

BLAST of CmoCh04G025860 vs. TAIR 10
Match: AT1G55150.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 80.1 bits (196), Expect = 4.1e-15
Identity = 49/182 (26.92%), Postives = 92/182 (50.55%), Query Frame = 0


Query: 102 KVMTGFKELGLYNEVAEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLL 161
           K +  F+++G  + V E  +  GF  P+ +   G P  ++G++++  +  G  + L+YLL
Sbjct: 96  KPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLL 155

Query: 162 PLIQNLKRDAKTNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLE 221
           P I ++  +A+        P   V+  T EL+ ++ Q A    +  ++KT    G     
Sbjct: 156 PAIVHV--NAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKG 215

Query: 222 LQNGASDVSIGLLIGTPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTS 281
            Q       + ++I TP  + +++E  +     + YLVLDE D M D+GF P I+KI++ 
Sbjct: 216 PQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSH 275

Query: 282 VK 284
           ++
Sbjct: 276 IR 275

[Close]

BLAST of CmoCh04G025860 vs. TAIR 10
Match: AT3G58570.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 9.1e-15
Identity = 48/190 (25.26%), Postives = 92/190 (48.42%), Query Frame = 0


Query: 93  VKGSGNGGEKVMTGFKELGLYNEVAEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYG 152
           ++ SG+     +  F E+ L   +    +   +  P+ +    IP L  G++++  +  G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193

Query: 153 PERALAYLLPLIQNLKRD---AKTNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQL 212
             +  A+  P+I  + +D    +  GVR  +P A ++  T EL+ ++   A+  S    +
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV 253

Query: 213 KTAKDNGFGQLELQNGASDVSIGLLIGTPNEVSELIEDGSVVSDEIKYLVLDELDTMFDL 272
           K     G   +  Q    +  + +L+ TP  +++L+E G V    +++L LDE D M D+
Sbjct: 254 KVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDM 313

Query: 273 GFGPNIKKIL 280
           GF P I+KI+
Sbjct: 314 GFEPQIRKIV 323

[Close]

BLAST of CmoCh04G025860 vs. TAIR 10
Match: AT2G47330.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 2.6e-14
Identity = 45/191 (23.56%), Postives = 93/191 (48.69%), Query Frame = 0


Query: 93  VKGSGNGGEKVMTGFKELGLYNEVAEAAEGMGFFVPSELHCVGIPALLEGKNVVLGSLYG 152
           ++ SG    + +  F++ G  +++  A +   +  P+ + C  +P +L G++V+  +  G
Sbjct: 216 IRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTG 275

Query: 153 PERALAYLLPLIQNLKRDAKTNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTA 212
             +  A++LP+I ++    +    R + P   +   T EL+ ++F  AK  S    L+ +
Sbjct: 276 SGKTAAFVLPMIVHIMDQPELQ--RDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVS 335

Query: 213 KDNGFGQLELQNGASDVSIGLLIGTPNEVSELIEDGSVVSDEIKYLVLDELDTMFDLGFG 272
              G      Q         +++ TP  + ++++  ++      YLVLDE D MFDLGF 
Sbjct: 336 AVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFE 395

Query: 273 PNIKKILTSVK 284
           P ++ I+  ++
Sbjct: 396 PQVRSIVGQIR 404

The following BLAST results are available for this feature:

BLAST of CmoCh04G025860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5VRY0	8.2e-45	38.81	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q56X76	1.9e-41	36.33	DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 P...	[more]
P42305	9.4e-17	25.09	ATP-dependent RNA helicase DbpA OS=Bacillus subtilis (strain 168) OX=224308 GN=d...	[more]
Q12S35	2.7e-16	27.47	ATP-dependent RNA helicase RhlB OS=Shewanella denitrificans (strain OS217 / ATCC...	[more]
A5UDI1	3.6e-16	31.21	ATP-dependent RNA helicase RhlB OS=Haemophilus influenzae (strain PittEE) OX=374...	[more]

BLAST of CmoCh04G025860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H541	1.2e-200	100.00	DEAD-box ATP-dependent RNA helicase 39-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JT03	5.7e-190	95.63	DEAD-box ATP-dependent RNA helicase 39-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1BZL0	4.2e-145	75.41	DEAD-box ATP-dependent RNA helicase 39-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A5A7SLY8	1.5e-129	69.73	DEAD-box ATP-dependent RNA helicase 39-like OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C4L0	1.5e-129	69.73	DEAD-box ATP-dependent RNA helicase 39-like OS=Cucumis melo OX=3656 GN=LOC103496...	[more]

BLAST of CmoCh04G025860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959642.1	2.5e-200	100.00	DEAD-box ATP-dependent RNA helicase 39-like [Cucurbita moschata]	[more]
KAG6602207.1	9.9e-197	98.09	DEAD-box ATP-dependent RNA helicase 39, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022990794.1	1.2e-189	95.63	DEAD-box ATP-dependent RNA helicase 39-like [Cucurbita maxima]	[more]
XP_023512464.1	2.4e-179	94.10	DEAD-box ATP-dependent RNA helicase 39-like isoform X1 [Cucurbita pepo subsp. pe...	[more]
KAG7032889.1	1.3e-161	84.97	DEAD-box ATP-dependent RNA helicase 39 [Cucurbita argyrosperma subsp. argyrosper...	[more]

BLAST of CmoCh04G025860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09730.1	1.3e-42	36.33	RH39	[more]
AT2G42520.1	1.4e-15	26.32	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G55150.1	4.1e-15	26.92	DEA(D/H)-box RNA helicase family protein	[more]
AT3G58570.1	9.1e-15	25.26	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G47330.1	2.6e-14	23.56	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 124..336 e-value: 8.2E-5 score: 32.0
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 136..321 score: 17.079416
IPR002004	Polyadenylate-binding protein/Hyperplastic disc protein	SMART	SM00517	poly_2	coord: 299..362 e-value: 0.0023 score: 13.1
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 136..305 e-value: 1.5E-19 score: 70.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 68..319 e-value: 8.3E-35 score: 122.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 102..307
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..98
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 76..361
None	No IPR available	PANTHER	PTHR24031:SF694	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE ISOFORM X1	coord: 76..361
IPR036053	PABC (PABP) domain	SUPERFAMILY	63570	PABC (PABP) domain	coord: 306..360

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G025860.1	CmoCh04G025860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902775	mitochondrial large ribosomal subunit assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding