CmoCh04G023560 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G023560
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	nucleolin-like
Location	Cmo_Chr04: 17571414 .. 17571998 (-)
RNA-Seq Expression	CmoCh04G023560
Synteny	CmoCh04G023560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAACTACTAACACAGAGGAGTCCGTATTTGATGCGAAGCGCAAAGTTGATACCTGCTCTGAAGAGAAACAGGAGCGTTCGAACAAAATTCAGAAGCTCGAAGTGGTTGAGGGCGATTCCTGCAATGCTGTGAAGAATGGTGTGAGTGGTGGAGGGATTGATGGCGATTCTTTGGTTGAGGGAGGGAAAGATGGTGGAGTTTGTGTGGATGTGGGAGAAGCAGAAGATGAAGATTATGAGGAGGTGGACAGCGACGAGGATGAGGAGGAAGATGGCAGCGACGATGGTGGAAAGTTGAGTGGGAAAGTGGATGAGGATCGTAAGGGGAAGGGTATCATGAAGGACGACAAAGGAAAAGGGAAATTTATTGAGGAGGAGGAAGACGACGACGACGACGACGACGACGATGGAAGTGAGTTAGGCTCTGAAGAGAGCGATTTGTCGGATGATCCGCTTACGGAGGTCGATTTGGACAACATACTTCCTTCAAGAACGCGAAGGCGGACTGTTCATCCTGGAGTTTATTTTGCTACGGATCTGGGGAACGACAACGATGATAGCAGCGATAGCGATGCTTGA

mRNA sequence

ATGGCGGAAACTACTAACACAGAGGAGTCCGTATTTGATGCGAAGCGCAAAGTTGATACCTGCTCTGAAGAGAAACAGGAGCGTTCGAACAAAATTCAGAAGCTCGAAGTGGTTGAGGGCGATTCCTGCAATGCTGTGAAGAATGGTGTGAGTGGTGGAGGGATTGATGGCGATTCTTTGGTTGAGGGAGGGAAAGATGGTGGAGTTTGTGTGGATGTGGGAGAAGCAGAAGATGAAGATTATGAGGAGGTGGACAGCGACGAGGATGAGGAGGAAGATGGCAGCGACGATGGTGGAAAGTTGAGTGGGAAAGTGGATGAGGATCGTAAGGGGAAGGGTATCATGAAGGACGACAAAGGAAAAGGGAAATTTATTGAGGAGGAGGAAGACGACGACGACGACGACGACGACGATGGAAGTGAGTTAGGCTCTGAAGAGAGCGATTTGTCGGATGATCCGCTTACGGAGGTCGATTTGGACAACATACTTCCTTCAAGAACGCGAAGGCGGACTGTTCATCCTGGAGTTTATTTTGCTACGGATCTGGGGAACGACAACGATGATAGCAGCGATAGCGATGCTTGA

Coding sequence (CDS)

ATGGCGGAAACTACTAACACAGAGGAGTCCGTATTTGATGCGAAGCGCAAAGTTGATACCTGCTCTGAAGAGAAACAGGAGCGTTCGAACAAAATTCAGAAGCTCGAAGTGGTTGAGGGCGATTCCTGCAATGCTGTGAAGAATGGTGTGAGTGGTGGAGGGATTGATGGCGATTCTTTGGTTGAGGGAGGGAAAGATGGTGGAGTTTGTGTGGATGTGGGAGAAGCAGAAGATGAAGATTATGAGGAGGTGGACAGCGACGAGGATGAGGAGGAAGATGGCAGCGACGATGGTGGAAAGTTGAGTGGGAAAGTGGATGAGGATCGTAAGGGGAAGGGTATCATGAAGGACGACAAAGGAAAAGGGAAATTTATTGAGGAGGAGGAAGACGACGACGACGACGACGACGACGATGGAAGTGAGTTAGGCTCTGAAGAGAGCGATTTGTCGGATGATCCGCTTACGGAGGTCGATTTGGACAACATACTTCCTTCAAGAACGCGAAGGCGGACTGTTCATCCTGGAGTTTATTTTGCTACGGATCTGGGGAACGACAACGATGATAGCAGCGATAGCGATGCTTGA

Protein sequence

MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

Homology

[Close]

BLAST of CmoCh04G023560 vs. ExPASy TrEMBL
Match: A0A6J1E206 (nucleolin-like OS=Cucurbita moschata OX=3662 GN=LOC111430049 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.4e-93
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60
           MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL
Sbjct: 1   MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60

Query: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKG 120
           VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKG
Sbjct: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKG 120

Query: 121 KGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180
           KGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT
Sbjct: 121 KGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180

Query: 181 DLGNDNDDSSDSDA 195
           DLGNDNDDSSDSDA
Sbjct: 181 DLGNDNDDSSDSDA 194

[Close]

BLAST of CmoCh04G023560 vs. ExPASy TrEMBL
Match: A0A6J1JJY9 (nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111487605 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.5e-85
Identity = 183/194 (94.33%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60
           MAETTNTEE VFDAKRKVD CSEEKQERSNKIQKLEVVEGDSCNAVKNGVSG GIDGDSL
Sbjct: 1   MAETTNTEEPVFDAKRKVDPCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGEGIDGDSL 60

Query: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKG 120
           VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEED SDDGGKLSGKVDEDRKGKGIMKDDKG
Sbjct: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDDSDDGGKLSGKVDEDRKGKGIMKDDKG 120

Query: 121 KGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180
           KGKFI+EEE     DDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT
Sbjct: 121 KGKFIDEEE-----DDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180

Query: 181 DLGNDNDDSSDSDA 195
           DLGN+NDDSSDSDA
Sbjct: 181 DLGNENDDSSDSDA 189

[Close]

BLAST of CmoCh04G023560 vs. ExPASy TrEMBL
Match: A0A6J1CKB5 (prothymosin alpha-B OS=Momordica charantia OX=3673 GN=LOC111011780 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.6e-50
Identity = 138/208 (66.35%), Postives = 155/208 (74.52%), Query Frame = 0


Query: 1   MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGG------G 60
           MAETT+ EE+ FDAKRK D C E K+E SNKIQKLEVV+ +SC+ VK   +G        
Sbjct: 1   MAETTSREETTFDAKRKPDPCCEAKEEHSNKIQKLEVVKDESCHDVKKSENGDHKRSDEH 60

Query: 61  IDGDSLVEGGKDG--GVCVDVGEAED-----EDYEEVDSDEDEEEDGSDDGGKLSGKVDE 120
           ID DSL   GKDG  G  VD GEA+D     EDYE+ + + DEEED S+          E
Sbjct: 61  IDDDSLAAEGKDGEVGAGVDAGEADDEEDDEEDYEDENDEVDEEEDASE--------AVE 120

Query: 121 DRKGKGIMKDDKGKGKFIEEEEDDDDDDDDD-GSELGSEESDLSDDPLTEVDLDNILPSR 180
           DRKGKGI+KDDKGKGK IEE++DDDD+D  D GSELGSEESDLSDDPLTEVDLDNILPSR
Sbjct: 121 DRKGKGIVKDDKGKGKLIEEDDDDDDEDSSDGGSELGSEESDLSDDPLTEVDLDNILPSR 180

Query: 181 TRRRTVHPGVYFATDLGNDNDDSSDSDA 195
           TRRRTVHPGVYFA DLGND+DDSSDSDA
Sbjct: 181 TRRRTVHPGVYFAKDLGNDDDDSSDSDA 200

[Close]

BLAST of CmoCh04G023560 vs. ExPASy TrEMBL
Match: A0A0A0KMR8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312330 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 3.3e-48
Identity = 137/209 (65.55%), Postives = 154/209 (73.68%), Query Frame = 0


Query: 1   MAETTNTEESV-FDAKRK-VDTCSEEKQERSNKIQKLEVVEG-DSCNAVKNGVSGGGIDG 60
           MAE TN EE V FDAKRK  D+C + K+ERSNKIQKLEVVEG +SCN V N    G   G
Sbjct: 1   MAEITNREEEVAFDAKRKPTDSCFQPKEERSNKIQKLEVVEGEESCNYVNNNAENGDHKG 60

Query: 61  ---------DSLVEG-GKDG--GVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKV 120
                     +++EG G DG  G  +D G+ E+EDYE+ D  ED+E        K S KV
Sbjct: 61  SDEQVDNISSTVLEGKGDDGVDGASLDAGD-EEEDYEDEDDSEDDE--------KSSAKV 120

Query: 121 DEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPS 180
            EDRKGKGIMKDDKGKGK IEE++DDD+D  DDGS+L SEESDLSDDPL EVDLDNILPS
Sbjct: 121 AEDRKGKGIMKDDKGKGKLIEEDDDDDEDSSDDGSQLDSEESDLSDDPLAEVDLDNILPS 180

Query: 181 RTRRRTVHPGVYFATDLGNDNDDSSDSDA 195
           RTRRRTVHPGVYFATDLGND+DDSSDSDA
Sbjct: 181 RTRRRTVHPGVYFATDLGNDDDDSSDSDA 200

[Close]

BLAST of CmoCh04G023560 vs. ExPASy TrEMBL
Match: A0A6J1K0H1 (nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111489076 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.8e-46
Identity = 135/209 (64.59%), Postives = 153/209 (73.21%), Query Frame = 0


Query: 1   MAETTNT-EESVFDAKRK-VDTCSEEKQERSNKIQKLEVVEGDSCNAV-KNGVSGGGIDG 60
           MAET ++ EE+ FDAKRK  D C E K+ERSNKIQKLEVVEG+ CN V KNG +G    G
Sbjct: 1   MAETASSREETAFDAKRKPADPCCEAKEERSNKIQKLEVVEGEPCNDVKKNGDNGDHKQG 60

Query: 61  DSLVEG------GKDGGVC---VDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDED 120
           D  ++       GKD GV    VD G  E EDY         +ED  ++G K SGK  +D
Sbjct: 61  DEQIDSISSAAEGKDDGVFAADVDAGN-EGEDY--------NDEDDCENGEKSSGKAAKD 120

Query: 121 RKGKGIMKDDKGKGKFIEEEEDDDDDDD---DDGSELGSEESDLSDDPLTEVDLDNILPS 180
           RKGKGIMKDDKGKGK IEE++DDDDDD+   DDGSE  +EESDLSDDPL EVDLDNILPS
Sbjct: 121 RKGKGIMKDDKGKGKLIEEDDDDDDDDEDSSDDGSEFDNEESDLSDDPLAEVDLDNILPS 180

Query: 181 RTRRRTVHPGVYFATDLGNDNDDSSDSDA 195
           RTRRRTVHPGVYFATDLGN++DDSSDSDA
Sbjct: 181 RTRRRTVHPGVYFATDLGNEDDDSSDSDA 200

[Close]

BLAST of CmoCh04G023560 vs. NCBI nr
Match: XP_022921946.1 (nucleolin-like [Cucurbita moschata] >XP_022921954.1 nucleolin-like [Cucurbita moschata] >XP_022921963.1 nucleolin-like [Cucurbita moschata] >XP_022921972.1 nucleolin-like [Cucurbita moschata])

HSP 1 Score: 350.9 bits (899), Expect = 7.0e-93
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60
           MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL
Sbjct: 1   MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60

Query: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKG 120
           VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKG
Sbjct: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKG 120

Query: 121 KGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180
           KGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT
Sbjct: 121 KGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180

Query: 181 DLGNDNDDSSDSDA 195
           DLGNDNDDSSDSDA
Sbjct: 181 DLGNDNDDSSDSDA 194

[Close]

BLAST of CmoCh04G023560 vs. NCBI nr
Match: KAG6601992.1 (B3 domain-containing transcription factor FUS3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 336.3 bits (861), Expect = 1.8e-88
Identity = 188/194 (96.91%), Postives = 190/194 (97.94%), Query Frame = 0


Query: 1   MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60
           MAETTNTEE VFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL
Sbjct: 275 MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 334

Query: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKG 120
           VEGGKDGGVCVDVGEAEDEDY+EVDSDEDEEED SDDGGKLSGK+DEDRKGKGIMKDDKG
Sbjct: 335 VEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKG 394

Query: 121 KGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180
           KGKFIEEEE  DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT
Sbjct: 395 KGKFIEEEE--DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 454

Query: 181 DLGNDNDDSSDSDA 195
           DLGNDNDDSSDSDA
Sbjct: 455 DLGNDNDDSSDSDA 466

[Close]

BLAST of CmoCh04G023560 vs. NCBI nr
Match: KAG7032689.1 (hypothetical protein SDJN02_06739, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 336.3 bits (861), Expect = 1.8e-88
Identity = 188/194 (96.91%), Postives = 190/194 (97.94%), Query Frame = 0


Query: 1   MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60
           MAETTNTEE VFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL
Sbjct: 1   MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60

Query: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKG 120
           VEGGKDGGVCVDVGEAEDEDY+EVDSDEDEEED SDDGGKLSGK+DEDRKGKGIMKDDKG
Sbjct: 61  VEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKG 120

Query: 121 KGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180
           KGKFIEEEE  DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT
Sbjct: 121 KGKFIEEEE--DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180

Query: 181 DLGNDNDDSSDSDA 195
           DLGNDNDDSSDSDA
Sbjct: 181 DLGNDNDDSSDSDA 192

[Close]

BLAST of CmoCh04G023560 vs. NCBI nr
Match: XP_023551987.1 (nuclear polyadenylated RNA-binding protein 3-like [Cucurbita pepo subsp. pepo] >XP_023551995.1 nuclear polyadenylated RNA-binding protein 3-like [Cucurbita pepo subsp. pepo] >XP_023552002.1 nuclear polyadenylated RNA-binding protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 331.6 bits (849), Expect = 4.4e-87
Identity = 187/194 (96.39%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60
           MAETTNTEE VFD KRKVD CSEEKQERSNKIQKLEVVEGDSCNAVKNGVSG GIDGDSL
Sbjct: 1   MAETTNTEEPVFDVKRKVDPCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGEGIDGDSL 60

Query: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKG 120
           VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEED SDDGGKLSGKVDEDRKGKGIMKDDKG
Sbjct: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDDSDDGGKLSGKVDEDRKGKGIMKDDKG 120

Query: 121 KGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180
           KGKFIEEEE  DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT
Sbjct: 121 KGKFIEEEE--DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180

Query: 181 DLGNDNDDSSDSDA 195
           DLGNDNDDSSDSDA
Sbjct: 181 DLGNDNDDSSDSDA 192

[Close]

BLAST of CmoCh04G023560 vs. NCBI nr
Match: XP_022990828.1 (nucleolin-like [Cucurbita maxima] >XP_022990829.1 nucleolin-like [Cucurbita maxima] >XP_022990830.1 nucleolin-like [Cucurbita maxima] >XP_022990831.1 nucleolin-like [Cucurbita maxima] >XP_022990832.1 nucleolin-like [Cucurbita maxima])

HSP 1 Score: 325.5 bits (833), Expect = 3.2e-85
Identity = 183/194 (94.33%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSL 60
           MAETTNTEE VFDAKRKVD CSEEKQERSNKIQKLEVVEGDSCNAVKNGVSG GIDGDSL
Sbjct: 1   MAETTNTEEPVFDAKRKVDPCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGEGIDGDSL 60

Query: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKG 120
           VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEED SDDGGKLSGKVDEDRKGKGIMKDDKG
Sbjct: 61  VEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDDSDDGGKLSGKVDEDRKGKGIMKDDKG 120

Query: 121 KGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180
           KGKFI+EEE     DDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT
Sbjct: 121 KGKFIDEEE-----DDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFAT 180

Query: 181 DLGNDNDDSSDSDA 195
           DLGN+NDDSSDSDA
Sbjct: 181 DLGNENDDSSDSDA 189

[Close]

BLAST of CmoCh04G023560 vs. TAIR 10
Match: AT1G12830.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 39778 Blast hits to 22088 proteins in 1060 species: Archae - 152; Bacteria - 6161; Metazoa - 14109; Fungi - 6144; Plants - 2156; Viruses - 601; Other Eukaryotes - 10455 (source: NCBI BLink). )

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-22
Identity = 92/221 (41.63%), Postives = 125/221 (56.56%), Query Frame = 0


Query: 1   MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGG------ 60
           MA+  N ++S F  KRK D   +++   +NK QKL      + +  K+G + G       
Sbjct: 1   MADVENQQDSSFPVKRKSDLFCQDQDNVTNKAQKLNPSLNSADSESKDGETNGSGQIENL 60

Query: 61  -------IDGDSLVEGGK-----DGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLS 120
                  I  +S V   K     + GV  DVG  E+++ EE + ++DEEE+  ++     
Sbjct: 61  NSSTEETIGAESSVLSEKAAEEVESGVIGDVGAEEEQEDEEDEEEDDEEEEEEEE----- 120

Query: 121 GKVDEDRKGKGIMKDDKGKGKFIE-EEEDDDDDDDDDGSELG---SEESDLSDDPLTEVD 180
                DRKGKGI ++DKGKGK IE EE DD+DD DDD  + G    +ESD SDDPL EVD
Sbjct: 121 ---VVDRKGKGISREDKGKGKMIEVEESDDEDDSDDDEDDEGFDEDDESDFSDDPLAEVD 180

Query: 181 LDNILPSRTRRRTVHPGVYFATDLGN-----DNDDSSDSDA 195
           LDNILPSRTRRR+  PGV+   +  N     ++D+SSDSDA
Sbjct: 181 LDNILPSRTRRRSSQPGVFIPNEFSNRHVNDEDDESSDSDA 213

The following BLAST results are available for this feature:

BLAST of CmoCh04G023560 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G023560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E206	3.4e-93	100.00	nucleolin-like OS=Cucurbita moschata OX=3662 GN=LOC111430049 PE=4 SV=1	[more]
A0A6J1JJY9	1.5e-85	94.33	nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111487605 PE=4 SV=1	[more]
A0A6J1CKB5	1.6e-50	66.35	prothymosin alpha-B OS=Momordica charantia OX=3673 GN=LOC111011780 PE=4 SV=1	[more]
A0A0A0KMR8	3.3e-48	65.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312330 PE=4 SV=1	[more]
A0A6J1K0H1	1.8e-46	64.59	nucleolin-like OS=Cucurbita maxima OX=3661 GN=LOC111489076 PE=4 SV=1	[more]

BLAST of CmoCh04G023560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921946.1	7.0e-93	100.00	nucleolin-like [Cucurbita moschata] >XP_022921954.1 nucleolin-like [Cucurbita mo...	[more]
KAG6601992.1	1.8e-88	96.91	B3 domain-containing transcription factor FUS3, partial [Cucurbita argyrosperma ...	[more]
KAG7032689.1	1.8e-88	96.91	hypothetical protein SDJN02_06739, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023551987.1	4.4e-87	96.39	nuclear polyadenylated RNA-binding protein 3-like [Cucurbita pepo subsp. pepo] >...	[more]
XP_022990828.1	3.2e-85	94.33	nucleolin-like [Cucurbita maxima] >XP_022990829.1 nucleolin-like [Cucurbita maxi...	[more]

BLAST of CmoCh04G023560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12830.1	3.1e-22	41.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 194..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..96
None	No IPR available	PANTHER	PTHR36899	OS04G0395700 PROTEIN	coord: 1..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G023560.1	CmoCh04G023560.1	mRNA