CmoCh04G021870 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G021870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Acyl-[acyl-carrier-protein] hydrolase
Location	Cmo_Chr04: 16151073 .. 16151889 (-)
RNA-Seq Expression	CmoCh04G021870
Synteny	CmoCh04G021870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCTGGAGGTATCATTCATTACTCTAGCAAGACTTTCCCCTTTTATAACTCGATTCGGGGTGGTTTGAAGAAACCGAGCTTATCCCCAGAGGTATGTCTTTAAGACGCCCCGAGGGTCAATACTTGAACGTTAGAGAGAAAAAGAAATCCATTCAAGTTTTGACACTTTTATATGCCTATTACAGACGATACCTGACCATGTTTTGGAGTCCCTTCAACTGTCTAGTATCATATTAGAGTATAGAAGGGAATGCGCAAGCTCTGATATAGTTCAATCACTATGTGAGCCAGAGAATGATGGAATCCTCAGGGATATGGACATGATAGAAGATAATGAAATCAATATCCTACATGGGTTTTCCTTGGCATCTGAGATTCTCAAATGTGGTGGGCTGTTGGGATCTTATAACCAAGGAGCATTGAGGTATACACATCTACTACAAATTGAAGGGGAAGCTAAGAATGAAGAGATAGTGAGGGGAAGAACCACATGGAAGAAGAAGCTTACCACTATACCATTTTCCACACAGTAAATATCATGTCTAGCAGTCTCGTGCCTCTTTACGAAGAAGACAACACACCAACAACGCAACATTCCTCCAAGCAAAAAGGATTATTCATAGTCTTGTTGCTTTGCTTCACAAGGGAGTTCATCAGATGGAGCTGCTCCTGCAAATGTAATAGAAATGACAGAGCATCCCTTCAAAGAGGTCAAGAAACTGTGTAAACATAAGAGAAACAATGTAAGTTCTTTCCGTAAGCTTATCCTTCTTATATATGTATATGTTTTTTTCAAGAGATTCTAATGCCTA

mRNA sequence

ATGGATGCTGGAGGTATCATTCATTACTCTAGCAAGACTTTCCCCTTTTATAACTCGATTCGGGGTGGTTTGAAGAAACCGAGCTTATCCCCAGAGACGATACCTGACCATGTTTTGGAGTCCCTTCAACTGTCTAGTATCATATTAGAGTATAGAAGGGAATGCGCAAGCTCTGATATAGTTCAATCACTATGTGAGCCAGAGAATGATGGAATCCTCAGGGATATGGACATGATAGAAGATAATGAAATCAATATCCTACATGGGTTTTCCTTGGCATCTGAGATTCTCAAATGTGGTGGGCTGTTGGGATCTTATAACCAAGGAGCATTGAGGTATACACATCTACTACAAATTGAAGGGGAAGCTAAGAATGAAGAGATAGTGAGGGGAAGAACCACATGGAAGAAGAAGCTTACCACTATACCATTTTCCACACAGTAAATATCATGTCTAGCAGTCTCGTGCCTCTTTACGAAGAAGACAACACACCAACAACGCAACATTCCTCCAAGCAAAAAGGATTATTCATAGTCTTGTTGCTTTGCTTCACAAGGGAGTTCATCAGATGGAGCTGCTCCTGCAAATGTAATAGAAATGACAGAGCATCCCTTCAAAGAGGTCAAGAAACTGTGTAAACATAAGAGAAACAATGTAAGTTCTTTCCGTAAGCTTATCCTTCTTATATATGTATATGTTTTTTTCAAGAGATTCTAATGCCTA

Coding sequence (CDS)

ATGGATGCTGGAGGTATCATTCATTACTCTAGCAAGACTTTCCCCTTTTATAACTCGATTCGGGGTGGTTTGAAGAAACCGAGCTTATCCCCAGAGACGATACCTGACCATGTTTTGGAGTCCCTTCAACTGTCTAGTATCATATTAGAGTATAGAAGGGAATGCGCAAGCTCTGATATAGTTCAATCACTATGTGAGCCAGAGAATGATGGAATCCTCAGGGATATGGACATGATAGAAGATAATGAAATCAATATCCTACATGGGTTTTCCTTGGCATCTGAGATTCTCAAATGTGGTGGGCTGTTGGGATCTTATAACCAAGGAGCATTGAGGTATACACATCTACTACAAATTGAAGGGGAAGCTAAGAATGAAGAGATAGTGAGGGGAAGAACCACATGGAAGAAGAAGCTTACCACTATACCATTTTCCACACAGTAA

Protein sequence

MDAGGIIHYSSKTFPFYNSIRGGLKKPSLSPETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFSLASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ

Homology

[Close]

BLAST of CmoCh04G021870 vs. ExPASy Swiss-Prot
Match: Q42712 (Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment) OS=Coriandrum sativum OX=4047 GN=FATA PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-07
Identity = 37/110 (33.64%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           E+IP  VL + +L +I L+YRREC   D+V SL  PE D         ED  +       
Sbjct: 276 ESIPKEVLYTHELETITLDYRRECQHDDVVDSLTSPEVD---------EDTAV------- 335

Query: 92  LASEILKCGGLLGSYNQG---ALRYTHLLQIEGEAKNEEIVRGRTTWKKK 139
             ++I+   G   +  +    +L++ H L++ G+    EI RGRT W+KK
Sbjct: 336 --TKIIGTNGHAAAATEARDDSLKFLHFLRVSGQGL--EINRGRTEWRKK 365

[Close]

BLAST of CmoCh04G021870 vs. ExPASy Swiss-Prot
Match: Q41635 (Dodecanoyl-[acyl-carrier-protein] hydrolase, chloroplastic OS=Umbellularia californica OX=3438 GN=FATB1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-05
Identity = 34/109 (31.19%), Postives = 46/109 (42.20%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           ET+PD + ES  +SS  LEYRREC              D +LR +  +            
Sbjct: 297 ETVPDSIFESHHISSFTLEYRRECT------------RDSVLRSLTTVS----------- 356

Query: 92  LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLT 141
                       G  ++  L   HLLQ+EG     E++R RT W+ KLT
Sbjct: 357 ------------GGSSEAGLVCDHLLQLEG---GSEVLRARTEWRPKLT 367

[Close]

BLAST of CmoCh04G021870 vs. ExPASy Swiss-Prot
Match: Q39473 (Dodecanoyl-[acyl-carrier-protein] hydrolase, chloroplastic OS=Cinnamomum camphora OX=13429 GN=FATB1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-05
Identity = 32/109 (29.36%), Postives = 46/109 (42.20%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           ET+PD + ES  +SS  +EYRREC    ++QSL                           
Sbjct: 297 ETVPDSIFESHHISSFTIEYRRECTMDSVLQSLTT------------------------- 356

Query: 92  LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLT 141
                     + G  ++  L   HLLQ+EG     E++R +T W+ KLT
Sbjct: 357 ----------VSGGSSEAGLVCEHLLQLEG---GSEVLRAKTEWRPKLT 367

[Close]

BLAST of CmoCh04G021870 vs. ExPASy Swiss-Prot
Match: Q42561 (Oleoyl-acyl carrier protein thioesterase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FATA PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.7e-05
Identity = 35/112 (31.25%), Postives = 51/112 (45.54%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           E+IP  ++++ +L  I L+YRREC   D+V SL                          +
Sbjct: 278 ESIPQEIVDTHELQVITLDYRRECQQDDVVDSLT-------------------------T 337

Query: 92  LASEILKCGGLLGSYNQGA-----LRYTHLLQIEGEAKNEEIVRGRTTWKKK 139
             SEI   GG  GS   G       ++ HLL++ G+   +EI RG T W+KK
Sbjct: 338 TTSEI---GGTNGSATSGTQGHNDSQFLHLLRLSGD--GQEINRGTTLWRKK 359

[Close]

BLAST of CmoCh04G021870 vs. ExPASy Swiss-Prot
Match: Q9SQI3 (Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum OX=3635 GN=FATB1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.2e-04
Identity = 34/107 (31.78%), Postives = 48/107 (44.86%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           E+ P  +LES +LS++ LEYRREC    ++QSL            D   +N +N+     
Sbjct: 324 ESAPLPILESHELSALTLEYRRECGRDSVLQSLTTVS--------DSNTENAVNV----- 383

Query: 92  LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKK 139
                            G     HLL+++  A   EIVRGRT W+ K
Sbjct: 384 -----------------GEFNCQHLLRLDDGA---EIVRGRTRWRPK 397

[Close]

BLAST of CmoCh04G021870 vs. ExPASy TrEMBL
Match: A0A6J1H665 (Acyl-[acyl-carrier-protein] hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111460383 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.5e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS
Sbjct: 290 ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 349

Query: 92  LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 148
           LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ
Sbjct: 350 LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 405

[Close]

BLAST of CmoCh04G021870 vs. ExPASy TrEMBL
Match: A0A6J1DFY4 (Acyl-[acyl-carrier-protein] hydrolase OS=Momordica charantia OX=3673 GN=LOC111020082 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.5e-48
Identity = 99/116 (85.34%), Postives = 107/116 (92.24%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           ETIPDHVLES QLSSI+LEYRREC SSDIVQSLCEPE DGILRD+D IEDNEI++L+GFS
Sbjct: 287 ETIPDHVLESHQLSSIVLEYRRECGSSDIVQSLCEPEEDGILRDVDKIEDNEISLLNGFS 346

Query: 92  LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 148
           LASEI K GGLLGS+++G LRYTHLLQIEGEAKNEEIVRGRTTWKKKLT IPF TQ
Sbjct: 347 LASEIFKAGGLLGSFDKGILRYTHLLQIEGEAKNEEIVRGRTTWKKKLTNIPFPTQ 402

[Close]

BLAST of CmoCh04G021870 vs. ExPASy TrEMBL
Match: A0A5D3E585 (Acyl-[acyl-carrier-protein] hydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00050 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.5e-48
Identity = 101/116 (87.07%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           ETIPDHVLES QLSSIILEYRREC SSDIVQSLCEP+ DGILRD++MIED+EI++L+GFS
Sbjct: 285 ETIPDHVLESHQLSSIILEYRRECGSSDIVQSLCEPDEDGILRDVEMIEDSEISLLNGFS 344

Query: 92  LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 148
           LASEILK GGLLGS+++G LRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ
Sbjct: 345 LASEILK-GGLLGSFDKGTLRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 399

[Close]

BLAST of CmoCh04G021870 vs. ExPASy TrEMBL
Match: A0A1S3CSW2 (Acyl-[acyl-carrier-protein] hydrolase OS=Cucumis melo OX=3656 GN=LOC103504583 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.5e-48
Identity = 101/116 (87.07%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           ETIPDHVLES QLSSIILEYRREC SSDIVQSLCEP+ DGILRD++MIED+EI++L+GFS
Sbjct: 285 ETIPDHVLESHQLSSIILEYRRECGSSDIVQSLCEPDEDGILRDVEMIEDSEISLLNGFS 344

Query: 92  LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 148
           LASEILK GGLLGS+++G LRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ
Sbjct: 345 LASEILK-GGLLGSFDKGTLRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 399

[Close]

BLAST of CmoCh04G021870 vs. ExPASy TrEMBL
Match: A0A6J1FHN8 (Acyl-[acyl-carrier-protein] hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111445440 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.6e-47
Identity = 100/117 (85.47%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           ETIPDHVLES QLSSIILEYRREC SSDIVQSLCEPE +GILRD+DMIED+EI++L+GFS
Sbjct: 285 ETIPDHVLESQQLSSIILEYRRECGSSDIVQSLCEPEENGILRDVDMIEDSEISLLNGFS 344

Query: 92  LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKL-TTIPFSTQ 148
           LASEILK GGLLGS++ G LRYTHLLQIEGEAKNEEI+RGRTTWKKK+ TTIPFSTQ
Sbjct: 345 LASEILKGGGLLGSFDNGTLRYTHLLQIEGEAKNEEIMRGRTTWKKKVTTTIPFSTQ 401

[Close]

BLAST of CmoCh04G021870 vs. NCBI nr
Match: XP_022959400.1 (palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 234.2 bits (596), Expect = 7.3e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS
Sbjct: 290 ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 349

Query: 92  LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 148
           LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ
Sbjct: 350 LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 405

[Close]

BLAST of CmoCh04G021870 vs. NCBI nr
Match: KAG7032537.1 (Palmitoyl-acyl carrier protein thioesterase, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.5 bits (589), Expect = 4.7e-57
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           ETIPDHVLES QLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS
Sbjct: 276 ETIPDHVLESHQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 335

Query: 92  LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 148
           LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ
Sbjct: 336 LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 391

[Close]

BLAST of CmoCh04G021870 vs. NCBI nr
Match: KAG6601831.1 (Dodecanoyl-[acyl-carrier-protein] hydrolase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231.5 bits (589), Expect = 4.7e-57
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           ETIPDHVLES QLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS
Sbjct: 65  ETIPDHVLESHQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 124

Query: 92  LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 148
           LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ
Sbjct: 125 LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 180

[Close]

BLAST of CmoCh04G021870 vs. NCBI nr
Match: XP_023520826.1 (palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023520983.1 palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.6 bits (584), Expect = 1.8e-56
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           ETIPDHVLES QLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS
Sbjct: 276 ETIPDHVLESHQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 335

Query: 92  LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 148
           LASEILKCGGLLGSYNQGALRY HLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ
Sbjct: 336 LASEILKCGGLLGSYNQGALRYAHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 391

[Close]

BLAST of CmoCh04G021870 vs. NCBI nr
Match: XP_022152342.1 (palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Momordica charantia])

HSP 1 Score: 202.2 bits (513), Expect = 3.1e-48
Identity = 99/116 (85.34%), Postives = 107/116 (92.24%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           ETIPDHVLES QLSSI+LEYRREC SSDIVQSLCEPE DGILRD+D IEDNEI++L+GFS
Sbjct: 287 ETIPDHVLESHQLSSIVLEYRRECGSSDIVQSLCEPEEDGILRDVDKIEDNEISLLNGFS 346

Query: 92  LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFSTQ 148
           LASEI K GGLLGS+++G LRYTHLLQIEGEAKNEEIVRGRTTWKKKLT IPF TQ
Sbjct: 347 LASEIFKAGGLLGSFDKGILRYTHLLQIEGEAKNEEIVRGRTTWKKKLTNIPFPTQ 402

[Close]

BLAST of CmoCh04G021870 vs. TAIR 10
Match: AT3G25110.1 (fatA acyl-ACP thioesterase )

HSP 1 Score: 48.1 bits (113), Expect = 6.9e-06
Identity = 35/112 (31.25%), Postives = 51/112 (45.54%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           E+IP  ++++ +L  I L+YRREC   D+V SL                          +
Sbjct: 278 ESIPQEIVDTHELQVITLDYRRECQQDDVVDSLT-------------------------T 337

Query: 92  LASEILKCGGLLGSYNQGA-----LRYTHLLQIEGEAKNEEIVRGRTTWKKK 139
             SEI   GG  GS   G       ++ HLL++ G+   +EI RG T W+KK
Sbjct: 338 TTSEI---GGTNGSATSGTQGHNDSQFLHLLRLSGD--GQEINRGTTLWRKK 359

[Close]

BLAST of CmoCh04G021870 vs. TAIR 10
Match: AT4G13050.1 (Acyl-ACP thioesterase )

HSP 1 Score: 47.8 bits (112), Expect = 9.0e-06
Identity = 36/110 (32.73%), Postives = 51/110 (46.36%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           E+IP  ++++ +L  I L+YRREC   DIV SL   E             NE+       
Sbjct: 277 ESIPQEIIDTHELKVITLDYRRECQQDDIVDSLTTSET-----------PNEV------- 336

Query: 92  LASEILKCGGLLGSYNQGALRY--THLLQIEGEAKN-EEIVRGRTTWKKK 139
               + K  G  GS       +  +H L I   ++N +EI RGRT W+KK
Sbjct: 337 ----VSKLTGTNGSTTSSKREHNESHFLHILRLSENGQEINRGRTQWRKK 364

[Close]

BLAST of CmoCh04G021870 vs. TAIR 10
Match: AT1G08510.1 (fatty acyl-ACP thioesterases B )

HSP 1 Score: 41.2 bits (95), Expect = 8.4e-04
Identity = 33/115 (28.70%), Postives = 46/115 (40.00%), Query Frame = 0


Query: 32  ETIPDHVLESLQLSSIILEYRRECASSDIVQSLCEPENDGILRDMDMIEDNEINILHGFS 91
           E+ P  ++E  +L S+ LEYRREC    ++QSL       I                   
Sbjct: 329 ESAPVGIMERQKLKSMTLEYRRECGRDSVLQSLTAVTGCDI------------------- 388

Query: 92  LASEILKCGGLLGSYNQGALRYTHLLQIEGEAKNEEIVRGRTTWKKKLTTIPFST 147
                   G L      G +   HLL+++  A   E+VRGRT W  K  T  + T
Sbjct: 389 --------GNLA---TAGDVECQHLLRLQDGA---EVVRGRTEWSSKTPTTTWGT 410

The following BLAST results are available for this feature:

BLAST of CmoCh04G021870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42712	4.6e-07	33.64	Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment) OS=Coriandrum...	[more]
Q41635	1.5e-05	31.19	Dodecanoyl-[acyl-carrier-protein] hydrolase, chloroplastic OS=Umbellularia calif...	[more]
Q39473	2.5e-05	29.36	Dodecanoyl-[acyl-carrier-protein] hydrolase, chloroplastic OS=Cinnamomum camphor...	[more]
Q42561	9.7e-05	31.25	Oleoyl-acyl carrier protein thioesterase 1, chloroplastic OS=Arabidopsis thalian...	[more]
Q9SQI3	2.2e-04	31.78	Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum...	[more]

BLAST of CmoCh04G021870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H665	3.5e-58	100.00	Acyl-[acyl-carrier-protein] hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111460...	[more]
A0A6J1DFY4	1.5e-48	85.34	Acyl-[acyl-carrier-protein] hydrolase OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A5D3E585	2.5e-48	87.07	Acyl-[acyl-carrier-protein] hydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CSW2	2.5e-48	87.07	Acyl-[acyl-carrier-protein] hydrolase OS=Cucumis melo OX=3656 GN=LOC103504583 PE...	[more]
A0A6J1FHN8	1.6e-47	85.47	Acyl-[acyl-carrier-protein] hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111445...	[more]

BLAST of CmoCh04G021870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959400.1	7.3e-58	100.00	palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Cucurbita mosch...	[more]
KAG7032537.1	4.7e-57	99.14	Palmitoyl-acyl carrier protein thioesterase, chloroplastic, partial [Cucurbita a...	[more]
KAG6601831.1	4.7e-57	99.14	Dodecanoyl-[acyl-carrier-protein] hydrolase, chloroplastic, partial [Cucurbita a...	[more]
XP_023520826.1	1.8e-56	98.28	palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Cucurbita pepo ...	[more]
XP_022152342.1	3.1e-48	85.34	palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Momordica chara...	[more]

BLAST of CmoCh04G021870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25110.1	6.9e-06	31.25	fatA acyl-ACP thioesterase	[more]
AT4G13050.1	9.0e-06	32.73	Acyl-ACP thioesterase	[more]
AT1G08510.1	8.4e-04	28.70	fatty acyl-ACP thioesterases B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002864	Acyl-ACP thioesterase	PFAM	PF01643	Acyl-ACP_TE	coord: 32..137 e-value: 6.7E-6 score: 25.6
None	No IPR available	GENE3D	3.10.129.10	Hotdog Thioesterase	coord: 29..136 e-value: 6.0E-10 score: 40.7
None	No IPR available	PANTHER	PTHR31727:SF10	ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE	coord: 32..139
IPR045023	Acyl-[acyl-carrier-protein] hydrolase FATA/B	PANTHER	PTHR31727	OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC	coord: 32..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G021870.1	CmoCh04G021870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0016297	acyl-[acyl-carrier-protein] hydrolase activity
molecular_function	GO:0000036	acyl carrier activity
molecular_function	GO:0016790	thiolester hydrolase activity