CmoCh04G021270 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G021270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ubiquitin domain-containing protein 7SL RNA2-like
Location	Cmo_Chr04: 14103993 .. 14104340 (-)
RNA-Seq Expression	CmoCh04G021270
Synteny	CmoCh04G021270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACGCCGCCGCTGCAGCCGTCGACGACAACGACAACGACGACGGCGGCGGCTGTGACGGTGGCAACGAGTGGGTCGTCGAAGAATAAGTTGAAAGTAATGGTGCAACTGAAATTTGAGAACTCAAAGATATCAATGGAAGTGAGCCCAACGGATAACGTGGGGAAATTGAAGAAAGAGCTGCATAAGCTACAGCAGAGACTGCATTTTCATCTGCCACCAGAGGATTTCTTTTTCATTTATGACCGCGACGTTATGGACGAAGACCGCTCCTTCCATTGGCATGGTGTGGCCCACGGTGATACCATTGAGATCTTCAATAGCAACGTTTCTGGCGGATCTTAA

mRNA sequence

ATGACAACGCCGCCGCTGCAGCCGTCGACGACAACGACAACGACGACGGCGGCGGCTGTGACGGTGGCAACGAGTGGGTCGTCGAAGAATAAGTTGAAAGTAATGGTGCAACTGAAATTTGAGAACTCAAAGATATCAATGGAAGTGAGCCCAACGGATAACGTGGGGAAATTGAAGAAAGAGCTGCATAAGCTACAGCAGAGACTGCATTTTCATCTGCCACCAGAGGATTTCTTTTTCATTTATGACCGCGACGTTATGGACGAAGACCGCTCCTTCCATTGGCATGGTGTGGCCCACGGTGATACCATTGAGATCTTCAATAGCAACGTTTCTGGCGGATCTTAA

Coding sequence (CDS)

ATGACAACGCCGCCGCTGCAGCCGTCGACGACAACGACAACGACGACGGCGGCGGCTGTGACGGTGGCAACGAGTGGGTCGTCGAAGAATAAGTTGAAAGTAATGGTGCAACTGAAATTTGAGAACTCAAAGATATCAATGGAAGTGAGCCCAACGGATAACGTGGGGAAATTGAAGAAAGAGCTGCATAAGCTACAGCAGAGACTGCATTTTCATCTGCCACCAGAGGATTTCTTTTTCATTTATGACCGCGACGTTATGGACGAAGACCGCTCCTTCCATTGGCATGGTGTGGCCCACGGTGATACCATTGAGATCTTCAATAGCAACGTTTCTGGCGGATCTTAA

Protein sequence

MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS

Homology

[Close]

BLAST of CmoCh04G021270 vs. ExPASy Swiss-Prot
Match: Q9ZQZ6 (Ubiquitin domain-containing protein 7SL RNA2 OS=Arabidopsis thaliana OX=3702 GN=7SL2 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.2e-07
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 30  NKLKVMVQLK---FENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDV 89
           N +K  V +K    +   I +EV+  DNV +L+KEL K+Q+R   +LP E F  +     
Sbjct: 180 NPMKFTVHVKPYQEDTKMIQVEVNADDNVEELRKELVKMQERGELNLPHEAFHLVSSELP 239

Query: 90  MDEDRSFHWHGVAHGDTIEI 107
           + E +SF W+ VA GDTIE+
Sbjct: 240 LIETKSFKWNRVADGDTIEL 259

[Close]

BLAST of CmoCh04G021270 vs. ExPASy Swiss-Prot
Match: Q9ZT95 (Ubiquitin domain-containing protein 7SL RNA1 OS=Arabidopsis thaliana OX=3702 GN=7SL1 PE=3 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 7.6e-05
Identity = 40/114 (35.09%), Postives = 59/114 (51.75%), Query Frame = 0


Query: 2   TTPPLQPSTTTTTTTAAAVTVATSGS------SKNKLKVMVQLK---FENSKISMEVSPT 61
           T   +QP+   +T+  A   +  S S        N +K  V +K    +   I +EV+  
Sbjct: 147 TNQVVQPTEQASTSGTAKEVLRDSDSPVEKKIKTNPMKFTVHVKPYQEDTRMIHVEVNAD 206

Query: 62  DNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEI 107
           DNV +L+KEL K+Q+R   +LP E F  +     + E +SF W+ VA GDTIEI
Sbjct: 207 DNVEELRKELVKMQERGELNLPHEAFHLVSSELPLTETKSFKWNRVADGDTIEI 260

[Close]

BLAST of CmoCh04G021270 vs. ExPASy TrEMBL
Match: A0A6J1EW13 (biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita moschata OX=3662 GN=LOC111436577 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 8.3e-55
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKK 60
           MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKK
Sbjct: 1   MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKK 60

Query: 61  ELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           ELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS
Sbjct: 61  ELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 115

[Close]

BLAST of CmoCh04G021270 vs. ExPASy TrEMBL
Match: A0A6J1I9Y4 (ubiquitin domain-containing protein 7SL RNA2-like OS=Cucurbita maxima OX=3661 GN=LOC111471417 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.1e-42
Identity = 96/115 (83.48%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKK 60
           MTTPP   +TTT TTT AAV VATSGSSKNKLKV+VQ KF NSKI MEVSPTDNVGKLKK
Sbjct: 1   MTTPPPSTTTTTPTTTTAAVMVATSGSSKNKLKVIVQPKFGNSKIPMEVSPTDNVGKLKK 60

Query: 61  ELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           EL KLQQRLHFHLPPE FFFIYDRDVMDEDRSF WHGVAH D+IEIFN +VSG S
Sbjct: 61  ELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHSDSIEIFNGSVSGES 115

[Close]

BLAST of CmoCh04G021270 vs. ExPASy TrEMBL
Match: A0A6J1GE65 (biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita moschata OX=3662 GN=LOC111453369 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.6e-37
Identity = 87/110 (79.09%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 6   LQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKL 65
           L+PS T +T    A    T+GSSKNKLKVMVQ KF NSKI MEV+PTDNVG+LKKEL KL
Sbjct: 143 LRPSPTVST----AAPGMTTGSSKNKLKVMVQPKFGNSKIPMEVNPTDNVGELKKELQKL 202

Query: 66  QQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           QQRLHFHLPPE FFFIYDRDVMDEDRSF WHGVAHGDTIEIFN +VSGGS
Sbjct: 203 QQRLHFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVSGGS 248

[Close]

BLAST of CmoCh04G021270 vs. ExPASy TrEMBL
Match: A0A6J1IPZ4 (biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita maxima OX=3661 GN=LOC111478395 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.0e-36
Identity = 86/111 (77.48%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 6   LQPSTTTTTTTAAAVTVATS-GSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHK 65
           L+PS T +T      T     GSSKNKLKVMVQ KF NSKI MEV+PTDNVG+LKKEL K
Sbjct: 146 LRPSPTVSTAALGMTTPPPQPGSSKNKLKVMVQPKFGNSKIPMEVNPTDNVGELKKELQK 205

Query: 66  LQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           LQQRLHFHLPPE FFFIYDRDVMDEDRSF WHGVAHGDTIEIFN +VSGGS
Sbjct: 206 LQQRLHFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVSGGS 256

[Close]

BLAST of CmoCh04G021270 vs. ExPASy TrEMBL
Match: A0A6J1IDL7 (uncharacterized protein LOC111472183 OS=Cucurbita maxima OX=3661 GN=LOC111472183 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.4e-33
Identity = 84/107 (78.50%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 9   STTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQR 68
           S + TTTT AAV VATSGSSKNKLKVMVQ KF NSKI MEV+PT+NVG+LKKEL KLQQR
Sbjct: 49  SPSPTTTTTAAVMVATSGSSKNKLKVMVQPKFWNSKIPMEVNPTNNVGELKKELQKLQQR 108

Query: 69  LHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           LHFH PPE FFFIYD D    DRSF WHGVAH DTIEIFN +VSGGS
Sbjct: 109 LHFHPPPEGFFFIYDHD----DRSFRWHGVAHDDTIEIFNDSVSGGS 151

[Close]

BLAST of CmoCh04G021270 vs. NCBI nr
Match: XP_022930090.1 (biquitin domain-containing protein 7SL RNA1-like [Cucurbita moschata])

HSP 1 Score: 222.6 bits (566), Expect = 1.7e-54
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKK 60
           MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKK
Sbjct: 1   MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKK 60

Query: 61  ELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           ELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS
Sbjct: 61  ELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 115

[Close]

BLAST of CmoCh04G021270 vs. NCBI nr
Match: KAG6603761.1 (Ubiquitin domain-containing protein 7SL RNA1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.3 bits (482), Expect = 9.4e-45
Identity = 100/114 (87.72%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 2   TTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKE 61
           T PP QPSTTTTTTT AA TVATSGSSKNKLKVMVQ KF NSKI MEV+PTDNVG+LKKE
Sbjct: 158 TPPPPQPSTTTTTTTVAAATVATSGSSKNKLKVMVQPKFGNSKIPMEVNPTDNVGELKKE 217

Query: 62  LHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           L KLQQRLHFHLPPE FFFIYDRDVMDEDRSF WHGVAHGDTIEIFN +VSGGS
Sbjct: 218 LQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVSGGS 271

[Close]

BLAST of CmoCh04G021270 vs. NCBI nr
Match: XP_022972905.1 (ubiquitin domain-containing protein 7SL RNA2-like [Cucurbita maxima])

HSP 1 Score: 179.5 bits (454), Expect = 1.7e-41
Identity = 96/115 (83.48%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKK 60
           MTTPP   +TTT TTT AAV VATSGSSKNKLKV+VQ KF NSKI MEVSPTDNVGKLKK
Sbjct: 1   MTTPPPSTTTTTPTTTTAAVMVATSGSSKNKLKVIVQPKFGNSKIPMEVSPTDNVGKLKK 60

Query: 61  ELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           EL KLQQRLHFHLPPE FFFIYDRDVMDEDRSF WHGVAH D+IEIFN +VSG S
Sbjct: 61  ELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHSDSIEIFNGSVSGES 115

[Close]

BLAST of CmoCh04G021270 vs. NCBI nr
Match: XP_023524537.1 (ubiquitin domain-containing protein 7SL RNA2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.8 bits (434), Expect = 3.5e-39
Identity = 93/115 (80.87%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKK 60
           +TT PLQ   TTTTTT   + VATSGSSKNKLKVMVQ KF NSKI MEV+PTDNVGKLKK
Sbjct: 47  VTTRPLQSLMTTTTTTMETMMVATSGSSKNKLKVMVQPKFGNSKIPMEVNPTDNVGKLKK 106

Query: 61  ELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           EL KLQ+RLHFHLP E FFFIYDRDVM EDRSF WHGVAHGDTIEIFN +VSGGS
Sbjct: 107 ELQKLQKRLHFHLPLEGFFFIYDRDVMGEDRSFSWHGVAHGDTIEIFNGSVSGGS 161

[Close]

BLAST of CmoCh04G021270 vs. NCBI nr
Match: XP_022950206.1 (biquitin domain-containing protein 7SL RNA1-like [Cucurbita moschata])

HSP 1 Score: 163.7 bits (413), Expect = 9.4e-37
Identity = 87/110 (79.09%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 6   LQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKL 65
           L+PS T +T    A    T+GSSKNKLKVMVQ KF NSKI MEV+PTDNVG+LKKEL KL
Sbjct: 143 LRPSPTVST----AAPGMTTGSSKNKLKVMVQPKFGNSKIPMEVNPTDNVGELKKELQKL 202

Query: 66  QQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           QQRLHFHLPPE FFFIYDRDVMDEDRSF WHGVAHGDTIEIFN +VSGGS
Sbjct: 203 QQRLHFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVSGGS 248

[Close]

BLAST of CmoCh04G021270 vs. TAIR 10
Match: AT4G05230.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 8.6e-20
Identity = 57/117 (48.72%), Postives = 76/117 (64.96%), Query Frame = 0


Query: 8   PSTTTTTTTA-----AAVTVATSGSSKN----KLKVMVQLKFENSKISMEVSPTDNVGKL 67
           P + +T  T+     + V +  S ++ N    KL+VMV  K    KI ++V+  DNVG+L
Sbjct: 90  PQSNSTEQTSNGHHESTVMIPMSNNNNNNNPKKLRVMVLPKSGTRKIPVDVNAGDNVGEL 149

Query: 68  KKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVSGGS 116
           +KEL K+QQR    LP E +FFIY ++VMDE+RSF WH V  GDTIEIFN +VSGGS
Sbjct: 150 RKELAKIQQRFQLSLPQEGYFFIYKQNVMDENRSFRWHRVDQGDTIEIFNGSVSGGS 206

[Close]

BLAST of CmoCh04G021270 vs. TAIR 10
Match: AT4G03370.1 (Ubiquitin family protein )

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-13
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 31  KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDED 90
           K+ VMVQ   E  +I +EV+   NV  L+KEL K+Q+R   +LP E FFFI+ +DV+ ED
Sbjct: 199 KITVMVQPFEETRRIQVEVNVLSNVEVLRKELVKMQERGELNLPHEGFFFIHKQDVLRED 258

Query: 91  RSFHWHGVAHGDTIEIFNSNVS 113
           +SF  + VA GDTIEIF   V+
Sbjct: 259 QSFMANRVAPGDTIEIFQGYVT 280

[Close]

BLAST of CmoCh04G021270 vs. TAIR 10
Match: AT4G03360.1 (Ubiquitin family protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-08
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 31  KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFI--YDRDVMD 90
           K+ VMVQ       I +EV+  DNV +L+KEL K+Q+R   +LP   ++ I  + + V+ 
Sbjct: 197 KMIVMVQPYGYTRMIQVEVTADDNVEELRKELVKMQERGELNLPQGMYYLIHKHKQAVLH 256

Query: 91  EDRSFHWHGVAHGDTIEI 107
           ED+SF  +GVA+GDTI+I
Sbjct: 257 EDQSFLTNGVAYGDTIQI 274

[Close]

BLAST of CmoCh04G021270 vs. TAIR 10
Match: AT4G03350.1 (ubiquitin family protein )

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-08
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 30  NKLKVMVQLK---FENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDV 89
           N +K  V +K    +   I +EV+  DNV +L+KEL K+Q+R   +LP E F  +     
Sbjct: 180 NPMKFTVHVKPYQEDTKMIQVEVNADDNVEELRKELVKMQERGELNLPHEAFHLVSSELP 239

Query: 90  MDEDRSFHWHGVAHGDTIEI 107
           + E +SF W+ VA GDTIE+
Sbjct: 240 LIETKSFKWNRVADGDTIEL 259

[Close]

BLAST of CmoCh04G021270 vs. TAIR 10
Match: AT4G02950.1 (Ubiquitin family protein )

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-08
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 31  KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFI--YDRDVMD 90
           K+ VM+Q       I +EV+  DNV +L+KEL K+Q+R   +LP   ++ I  + + V+ 
Sbjct: 231 KMIVMLQPYGYTRMIQVEVTADDNVEELRKELVKMQERGELNLPQGMYYLIHKHKQAVLH 290

Query: 91  EDRSFHWHGVAHGDTIEI 107
           ED+SF  +GVA+GDTI+I
Sbjct: 291 EDQSFLTNGVAYGDTIQI 308

The following BLAST results are available for this feature:

BLAST of CmoCh04G021270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZQZ6	6.2e-07	40.00	Ubiquitin domain-containing protein 7SL RNA2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9ZT95	7.6e-05	35.09	Ubiquitin domain-containing protein 7SL RNA1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of CmoCh04G021270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EW13	8.3e-55	100.00	biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1I9Y4	8.1e-42	83.48	ubiquitin domain-containing protein 7SL RNA2-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1GE65	4.6e-37	79.09	biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1IPZ4	3.0e-36	77.48	biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1IDL7	1.4e-33	78.50	uncharacterized protein LOC111472183 OS=Cucurbita maxima OX=3661 GN=LOC111472183...	[more]

BLAST of CmoCh04G021270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930090.1	1.7e-54	100.00	biquitin domain-containing protein 7SL RNA1-like [Cucurbita moschata]	[more]
KAG6603761.1	9.4e-45	87.72	Ubiquitin domain-containing protein 7SL RNA1, partial [Cucurbita argyrosperma su...	[more]
XP_022972905.1	1.7e-41	83.48	ubiquitin domain-containing protein 7SL RNA2-like [Cucurbita maxima]	[more]
XP_023524537.1	3.5e-39	80.87	ubiquitin domain-containing protein 7SL RNA2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022950206.1	9.4e-37	79.09	biquitin domain-containing protein 7SL RNA1-like [Cucurbita moschata]	[more]

BLAST of CmoCh04G021270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05230.1	8.6e-20	48.72	Ubiquitin-like superfamily protein	[more]
AT4G03370.1	4.5e-13	50.00	Ubiquitin family protein	[more]
AT4G03360.1	2.0e-08	43.59	Ubiquitin family protein	[more]
AT4G03350.1	4.4e-08	40.00	ubiquitin family protein	[more]
AT4G02950.1	4.4e-08	42.31	Ubiquitin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 37..106 e-value: 4.3E-7 score: 29.6
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 32..113 score: 9.917904
None	No IPR available	GENE3D	3.10.20.90		coord: 16..112 e-value: 4.1E-10 score: 41.2
None	No IPR available	PANTHER	PTHR10621:SF38	UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED	coord: 21..114
None	No IPR available	PANTHER	PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	coord: 21..114
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 44..107 e-value: 1.99683E-4 score: 35.2646
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 30..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G021270.1	CmoCh04G021270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0031593	polyubiquitin modification-dependent protein binding
molecular_function	GO:0070628	proteasome binding
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0005515	protein binding