CmoCh04G020670 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G020670
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein S3
Location	Cmo_Chr04: 11796823 .. 11800077 (+)
RNA-Seq Expression	CmoCh04G020670
Synteny	CmoCh04G020670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAACTTCTGTTCGTTGTAAGATCATTGAAGGAAGGGTTAGTCATAAATTTGGAGAGTTTGCTTCGACACGGAAACGAAGACTTTCGAGAACAAATATTGGACGGGGAAAAAAAAGGGGAGAAAGTCAAGGCGCATATGGCACGAAAAGGAAATCTGATTTCGATAAGACTTGATCTAAATCGTAGTTCAGATTCAAGTTGGTTCAGTGAGGGCGATCGCGAAAGTCACCGAATAGGTAAGTCTTTTCCTTTTGTCCTATATTGAAAATAAAAAAAGCGTGGGAGGACATTGCACAGATGTCCAGGACGGATACAACTTTTTCTAACATTAGAAGACCTCTGGAAGACACCCGGGACCAGAGCATGTCGTGAAAGAAGCACACTGGCTGTGCTTCAATCGTGTTTCTGGGGCATAGTTGAATGTAGATATCATGAACGCGAGGTGCAAGATACCAGGCCAAGAAACCCGGGCAACCACTACCCTATGTGCTGATCGCTAGCGCATCCAAGGCCCCGACGCCCAGTAGAGCTGGAGAGACCTAGCTGGATCTGAGAAGTGCTAATTCGGTTCGTCTCGACTTCATTTAAGAACACCCCCCTTGGAATCCACAAGAAAACAAGTGCTATCAGATCAGTGAATAAACCCCTTCAACAAATAAGAGTTTTCAGTGGAACCGGTGAATCACGCGAGCAGGTTAGATGCATGCGTGGGACAGAGGGCTCATAGTACCCGTTAGCGCAGCTATACAGTGGAAGGGAAGGAGCCTAAATCAACCCCCCCTTTTTTTCTTTGATAAACAACACAACACAAAGAGATTAGACTCTCGGATGAGACTAAGCAGCCATCGACCGTTACGACGTGCCCCTGACCCATCTTGATTAAGACCAAACAAACAAAACCTATAAAAAATAGAGTAGAGCCTAGTTTAAGCTCTCAAACAAATAAATGAGAGAATGGAAAATGATGAGAATATCCACTAGTAGGGATATGTATAGATGGAGAGTCTCTCTCAGTAAAGAGAGTTGTAGATTCGTAGGAAAGGAGAGGAGCGAAGCAATGAGGCACACAATGAATGAGCGAAGCAACTTTACCGGAAGGGTGAGGTGAATGAGCGAATGAATCAGTTTCCCCTTTTTCAATAACAAAAAAGGAAAGAAAGAAGGACTTGACTTATTAGAATATTAGTAAAAGCGCCTTAGCCTATCCCTCGATATAGGAAGGGGCCTTTTCTTGCTCGTTAGCGCTCCCTTACCCTTATTTATCAACCTGACTCTGACTACTAATAATAATGAAGGGGCTTCTTTCTTCAAATATCCTATCAAGTTGGGGCTGAAAAGCTTTGAGTTTAGGGGTGCACAGGTTTGGAACCCTATACAAGGGGCTTTTCCTTTCAAATGACACCTCTTTCTTCTGTGAGGGAGTTGCACGAAACCAACCCGCTCCCGCACCCGATCAAGTACCTGTTGCTTTGCTGGTAGGCCCACTTAGGTTAGGGTTGTCCCTCAGTTCTTACCAACCTCTAGTGTGTAATCGATATGTTGCTAGCTTCAACTCGGTGGAATAAGAATAATTGATTCCCTTGTCTATTTCTTATTCATTCATAGGGTTCGGGCGGTGCGTGCTCCTTTCTCAACCTAGAACAACTCTGAACGTTAGGGAAGATAAGGGAAGACCACCTGAGCAAACCGATCGAAGGGACTTGACTTATTCGAACCGAAGGATAGCAGCTTCAAACTCAGCCTATCACGAGTAGCTTCGCTACTTGATCGGCGGGGAGGAGCATCTCAAAGTATGGGTAATAAGATAAGGAATCACTACAAGGGGAATAAGATTCGAATTACCTTGTTGATCGAATATCTCAAGGCAAGAAGAACATTTGATTGAGATTCAAATCACTTCACAAGCAAGATTGATCATGTCTAGCTTGAATGATTCTTGTTGATCAAATATCTCAAGGCAAGAACACTTGCTTGAGATTCGAATCACTCCACAAGCAAGATTGATCATGTCGAGCTTGAATGATTCTACATGCAACCTAAACTACATAGAATTGCAAAGAAATTTAGCCATTGGCTAAAGAAAAGCACAAATGCTTCTTTTACTATATTTTCCAAGTCTTCTTATAAATACAACATACAAGGCTTTATATAGCCTCAAAAATGAAACTATTAAATCCATTCCAAGAGTTGTAACATTTATACTTTATGGCCATAATTAGCCATTATGTGAATGTAACTTAAATAAATAAAAAGTCTTAAAATACATTAATGACATACAATAACTCTCAATTGTAACCCACCCAAAATTTATAACAATCAAACTTCATTCTTCTTCAATGTGGCATGAATTGAAACATCTTTTGATAATTTTGACAACCTTTTCTTCACATCTTCATTGAAGTATATTGTATGATTGATGTCTCTTGGTTCATATCAATGGGGCAAAGGATCAAGCGCTTTGACCTTGTCTCCCAGGATCCACCACAGTTTTGGTTTGAGAGTCGTGTGACGGGTGACTATCCAACACGGTTCGGAGAGCACTTTGAGTCTGCATTGGTGAATTCTCCTATCAAGAAAGAAGTGGCTCTTCCCACGGCGGAGTCGCCATTAACTCTATTTATTATTATGGTAAAGCACTGTATCAAGATGTCAATCTGAGATCTTATTTTGGTTCAATACGTCCACCTACGAGATTGACCTTTGGCTTTCGTCTTGGTAGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCTCATCGACCACGAGGACTGGAACGACGCGCAAAATCCAAACCCGAAAAGGATCAGGGCCGGTGGTGGGCATTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACAAAGTGAGAGCCTGGGAGGCAGAGAAAAGAGTGGAGTCGATGATCAAGCTCGACGACCGGGAAAAGCAAAATGAAATTAGGATTTGGCTGAAAAAGAAGCAAGACTATGAATTCCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCATGTCAGCGGGGCCTTCAAGCATCCGAATATGCTGAAGCTGTAAATTACATAGCGTTCCTGATCGAAAATGATGACTCCTTCAGAAAAATGAAGTTATTCAAGTTCTTTTTCCCAAATCAGTCCCCTCCGACGGCCCGGCGAGTCATCTACTTAAAAGAACCCTCCCCGCAGTGCGCCCCTCCATGA

mRNA sequence

ATGGAAAAACTTCTGTTCGTTGTAAGATCATTGAAGGAAGGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCTCATCGACCACGAGGACTGGAACGACGCGCAAAATCCAAACCCGAAAAGGATCAGGGCCGGTGGTGGGCATTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACAAAGTGAGAGCCTGGGAGGCAGAGAAAAGAGTGGAGTCGATGATCAAGCTCGACGACCGGGAAAAGCAAAATGAAATTAGGATTTGGCTGAAAAAGAAGCAAGACTATGAATTCCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCATCGGGGCCTTCAAGCATCCGAATATGCTGAAGCTGTAAATTACATAGCGTTCCTGATCGAAAATGATGACTCCTTCAGAAAAATGAAGTTATTCAAGTTCTTTTTCCCAAATCAGTCCCCTCCGACGGCCCGGCGAGTCATCTACTTAAAAGAACCCTCCCCGCAGTGCGCCCCTCCATGA

Coding sequence (CDS)

ATGGAAAAACTTCTGTTCGTTGTAAGATCATTGAAGGAAGGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCTCATCGACCACGAGGACTGGAACGACGCGCAAAATCCAAACCCGAAAAGGATCAGGGCCGGTGGTGGGCATTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACAAAGTGAGAGCCTGGGAGGCAGAGAAAAGAGTGGAGTCGATGATCAAGCTCGACGACCGGGAAAAGCAAAATGAAATTAGGATTTGGCTGAAAAAGAAGCAAGACTATGAATTCCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCATCGGGGCCTTCAAGCATCCGAATATGCTGAAGCTGTAAATTACATAGCGTTCCTGATCGAAAATGATGACTCCTTCAGAAAAATGAAGTTATTCAAGTTCTTTTTCCCAAATCAGTCCCCTCCGACGGCCCGGCGAGTCATCTACTTAAAAGAACCCTCCCCGCAGTGCGCCCCTCCATGA

Protein sequence

MEKLLFVVRSLKEGCIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLHRGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAPP

Homology

[Close]

BLAST of CmoCh04G020670 vs. ExPASy Swiss-Prot
Match: P27754 (Ribosomal protein S3, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS3 PE=3 SV=2)

HSP 1 Score: 218.0 bits (554), Expect = 9.0e-56
Identity = 117/175 (66.86%), Postives = 129/175 (73.71%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RPR L+R  KS+P K++ RWW FGKVGPIGCLHS+DDTEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRGKKSRPGKEKARWWEFGKVGPIGCLHSNDDTEEER 119

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           N+V    A KRVES I+LDDREKQNEIRIW KKKQ Y +HDRSPS KKNLSKSL      
Sbjct: 120 NEVGGRGAGKRVES-IRLDDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLSKSLRVSGAF 179

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  +N IAFLIENDDSFRK KLFKFFFP +S         LK   P   P
Sbjct: 180 KHPKYAGVLNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTPPAVRP 233

[Close]

BLAST of CmoCh04G020670 vs. ExPASy Swiss-Prot
Match: Q04716 (Ribosomal protein S3, mitochondrial OS=Petunia hybrida OX=4102 GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.0e-55
Identity = 119/175 (68.00%), Postives = 129/175 (73.71%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RPR L+RR KS+P K++GRW AFGKVGPIGCLHSSD TEEER
Sbjct: 59  CIILHFPKRTFIHFFLPRRPRRLKRREKSRPVKEKGRWGAFGKVGPIGCLHSSDGTEEER 118

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           N+VR   A KRVES I+LDDREKQNEIRIW KKKQ Y +HDRSPS KKNLSKSL      
Sbjct: 119 NEVRGRGAGKRVES-IRLDDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLSKSLRVSGAF 178

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA   N IAFLIENDDSFRK  LFKFFFP +S         LK   P   P
Sbjct: 179 KHPKYAGIENDIAFLIENDDSFRKTNLFKFFFPKKSRSDRPTSHLLKRTLPAVRP 232

[Close]

BLAST of CmoCh04G020670 vs. ExPASy Swiss-Prot
Match: P27928 (Ribosomal protein S3, mitochondrial OS=Zea mays OX=4577 GN=RPS3 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.1e-52
Identity = 115/176 (65.34%), Postives = 126/176 (71.59%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RP  L+RR KS+P KD+GRWWAFGKVGPIGCLHSS+ TEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWAFGKVGPIGCLHSSEGTEEER 119

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           N+VR   A KRVES+    DREKQNEIRIW KK Q Y +HDR+PSRKKN SKSL      
Sbjct: 120 NEVRGRGAGKRVESI----DREKQNEIRIWPKKMQRYGYHDRTPSRKKNFSKSLRVSGAF 179

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFF-PNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  VN IAFLIENDDSF K KLFKFFF P +S         LK   P   P
Sbjct: 180 KHPKYAGVVNDIAFLIENDDSFIKTKLFKFFFLPKKSRSDGPTSHLLKRTLPAVRP 231

[Close]

BLAST of CmoCh04G020670 vs. ExPASy Swiss-Prot
Match: Q95749 (Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS3 PE=1 SV=3)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 109/157 (69.43%), Postives = 122/157 (77.71%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWW-AFGKVGPIGCLHSSDDTEEE 74
           CIILHFPK TFIHFFLP RPR L+RR K++P K++GRWW  FGK GPI CLHSSDDTEEE
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEE 119

Query: 75  RNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RG 134
           RN+VR   A KRVES I+LDDR+KQNEIR W KKKQ Y +HDR PS KKNLSK L     
Sbjct: 120 RNEVRGRGARKRVES-IRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLSKLLRISGA 179

Query: 135 LQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS 169
            +  +YA  VN IAFLIENDDSF+K KLFK FF N+S
Sbjct: 180 FKHPKYAGVVNDIAFLIENDDSFKKTKLFKLFFQNKS 215

[Close]

BLAST of CmoCh04G020670 vs. ExPASy Swiss-Prot
Match: P49386 (Ribosomal protein S3, mitochondrial OS=Brassica napus OX=3708 GN=RPS3 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 9.7e-50
Identity = 107/157 (68.15%), Postives = 121/157 (77.07%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAF-GKVGPIGCLHSSDDTEEE 74
           CI+LHFPK TFIHFFLP RPR L+RR K++P K++GRWW   GK GPIGCL   DDTEEE
Sbjct: 60  CILLHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTPGKAGPIGCLR--DDTEEE 119

Query: 75  RNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RG 134
           RN+VR   A KRVES I+LDDR+KQNEIR W KKKQ Y +HDR+PS KKNLSKSL     
Sbjct: 120 RNEVRGRGARKRVES-IRLDDRKKQNEIRGWPKKKQRYGYHDRTPSIKKNLSKSLRISGA 179

Query: 135 LQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS 169
            +  +Y   VN IAFLIENDDSFRK KLFKFFFP +S
Sbjct: 180 FKHPKYGGVVNDIAFLIENDDSFRKTKLFKFFFPKKS 213

[Close]

BLAST of CmoCh04G020670 vs. ExPASy TrEMBL
Match: E5DM03 (Ribosomal protein S3 (Fragment) OS=Cucurbita pepo OX=3663 GN=rps3 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 9.1e-67
Identity = 136/175 (77.71%), Postives = 142/175 (81.14%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLP RPRGL+RRAKSKP KDQGRWWAFGKVGPIGCLHSSDDTEEER
Sbjct: 6   CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 65

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           NKVR  EAEKRVESMI+LDDREKQNEIRIW KKKQDY +HDRSPSRKKNLSKSL      
Sbjct: 66  NKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAF 125

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  VN IAFLIENDDSFRK +LFKFFFPNQS         LK   P   P
Sbjct: 126 KHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQSRSDGPTSHLLKRTLPAVRP 180

[Close]

BLAST of CmoCh04G020670 vs. ExPASy TrEMBL
Match: D5I3F1 (Ribosomal protein S3 OS=Cucurbita pepo OX=3663 GN=rps3 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.5e-66
Identity = 135/175 (77.14%), Postives = 141/175 (80.57%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLP RPRGL+RRAKSKP KDQGRWWAFGKVGPIGCLHSSDDTEEER
Sbjct: 60  CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           NKVR  EAEKRVESMI+LDDREKQNEIRIW KKKQDY +HDRSPSRKKNLSK L      
Sbjct: 120 NKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKLLRVSGAF 179

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  VN IAFLIENDDSFRK +LFKFFFPNQS         LK   P   P
Sbjct: 180 KHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQSRSDGPTSHLLKRTLPAVRP 234

[Close]

BLAST of CmoCh04G020670 vs. ExPASy TrEMBL
Match: D5I3A1 (Ribosomal protein S3 OS=Citrullus lanatus OX=3654 GN=rps3 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 7.7e-58
Identity = 125/175 (71.43%), Postives = 134/175 (76.57%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RPR L+RR KSKP K++GRWWAFGKVGPIGCLHSSDDTEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKSKPGKEKGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           N+VR  EAEKRVES I+LDDREKQNEIRIW KKKQ Y +HDRSPS KKNLSK L      
Sbjct: 120 NEVRGREAEKRVES-IRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLSKLLRVSGAF 179

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S         LK   P   P
Sbjct: 180 KHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTLPAVRP 233

[Close]

BLAST of CmoCh04G020670 vs. ExPASy TrEMBL
Match: B0L4P6 (Ribosomal protein S3 (Fragment) OS=Itea virginica OX=23081 GN=rps3 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.8e-57
Identity = 122/175 (69.71%), Postives = 133/175 (76.00%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RPR L+RR KS+P K++GRWWAFGKVGPIGCLHSSD TEEER
Sbjct: 7   CIILHFPKRTFIHFFLPRRPRRLKRREKSRPGKEKGRWWAFGKVGPIGCLHSSDGTEEER 66

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSL--HRGL 134
            +VR W A KRVES I+LDDREKQNEIRIW KKKQ Y +HDRSPS+KKNLSKSL      
Sbjct: 67  KEVRGWGAGKRVES-IRLDDREKQNEIRIWPKKKQRYGYHDRSPSKKKNLSKSLWVSGAF 126

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S         LK   P   P
Sbjct: 127 KHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTLPAVRP 180

[Close]

BLAST of CmoCh04G020670 vs. ExPASy TrEMBL
Match: E5DMH2 (Ribosomal protein S3 (Fragment) OS=Schinus molle OX=43851 GN=rps3 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.8e-57
Identity = 116/156 (74.36%), Postives = 129/156 (82.69%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RPR L+RR K++P K++GRWW FGKVGPIGCLHSSDDTEEER
Sbjct: 6   CIILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTFGKVGPIGCLHSSDDTEEER 65

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           N+V+ W A KRVES I+LDDREKQNEIRIW KKKQ Y +HDR PS+KKNLSKSL      
Sbjct: 66  NEVKGWGARKRVES-IRLDDREKQNEIRIWPKKKQRYGYHDRPPSKKKNLSKSLRVSGAF 125

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS 169
           +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S
Sbjct: 126 KHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKS 160

[Close]

BLAST of CmoCh04G020670 vs. TAIR 10
Match: ATMG00090.1 (structural constituent of ribosome;protein binding )

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 110/157 (70.06%), Postives = 123/157 (78.34%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWW-AFGKVGPIGCLHSSDDTEEE 74
           CIILHFPK TFIHFFLP RPR L+RR K++P K++GRWW  FGK GPI CLHSSDDTEEE
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEE 119

Query: 75  RNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RG 134
           RN+VR   A KRVES I+LDDR+KQNEIR W KKKQ Y +HDR PS KKNLSKSL     
Sbjct: 120 RNEVRGRGARKRVES-IRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGA 179

Query: 135 LQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS 169
            +  +YA  VN IAFLIENDDSF+K KLFK FF N+S
Sbjct: 180 FKHPKYAGVVNDIAFLIENDDSFKKTKLFKLFFQNKS 215

The following BLAST results are available for this feature:

BLAST of CmoCh04G020670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27754	9.0e-56	66.86	Ribosomal protein S3, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS3 PE=3...	[more]
Q04716	2.0e-55	68.00	Ribosomal protein S3, mitochondrial OS=Petunia hybrida OX=4102 GN=YRPS3 PE=2 SV=...	[more]
P27928	2.1e-52	65.34	Ribosomal protein S3, mitochondrial OS=Zea mays OX=4577 GN=RPS3 PE=3 SV=1	[more]
Q95749	1.4e-51	69.43	Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS3 PE=1...	[more]
P49386	9.7e-50	68.15	Ribosomal protein S3, mitochondrial OS=Brassica napus OX=3708 GN=RPS3 PE=3 SV=1	[more]

BLAST of CmoCh04G020670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5DM03	9.1e-67	77.71	Ribosomal protein S3 (Fragment) OS=Cucurbita pepo OX=3663 GN=rps3 PE=3 SV=1	[more]
D5I3F1	4.5e-66	77.14	Ribosomal protein S3 OS=Cucurbita pepo OX=3663 GN=rps3 PE=3 SV=1	[more]
D5I3A1	7.7e-58	71.43	Ribosomal protein S3 OS=Citrullus lanatus OX=3654 GN=rps3 PE=3 SV=1	[more]
B0L4P6	3.8e-57	69.71	Ribosomal protein S3 (Fragment) OS=Itea virginica OX=23081 GN=rps3 PE=3 SV=1	[more]
E5DMH2	3.8e-57	74.36	Ribosomal protein S3 (Fragment) OS=Schinus molle OX=43851 GN=rps3 PE=3 SV=1	[more]

BLAST of CmoCh04G020670 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00090.1	1.9e-53	70.06	structural constituent of ribosome;protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044954	Ribosomal protein S3, mitochondrial, plant	PANTHER	PTHR35928	RIBOSOMAL PROTEIN S3, MITOCHONDRIAL	coord: 82..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G020670.1	CmoCh04G020670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome