CmoCh04G020530 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G020530
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	succinate dehydrogenase assembly factor 2, mitochondrial
Location	Cmo_Chr04: 11461190 .. 11462445 (+)
RNA-Seq Expression	CmoCh04G020530
Synteny	CmoCh04G020530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAAGAAGAAAGGTATAGCCGATGAGAAGGTGAGGTGGGTAACAGATGAAGAAACGATGAAGTAAGGACTTGTTAGTGGTAACCGGTGGTGGAGGAAGCAGAAGGACAAAAGATTTGCAAATAATTAAAAAAAATGAACAACCTAACGACTCGACCCAACAAAAAATAGAGGGTTGGATTAGATTGTGACGTCTATTTAGATCATTCGGATCATCATTTTTGGATTGGTCCAATAATATTTCTCAACCCAACCTTACCGCGCAGACTCCTACTCATTTCTATCCCCATGGCCAGCTATTATAGGGCCTTCATGGCACTAGTCCACTAACTATTAAAATCAAGGGTAACCGCCAATGCCTAGTGACAAAGGGAATGGTGGAGGAGATAGTTTCATTAAGTGTGAAAGTTACAACAATGGGTAGTAAAATCGAGGGGAAGGGTTTGAGTTTAGTGTTCCTTACCACCAAAATAGGTGATTTCAGTTCAGTCCATCTGCGGAAACTGGGTATTGCTGATTTCAGTTCCTCATTTTTCTTTCTTTCTTTCTTTTAAATCTATTGTAAATGATCTTGAGGACTACTTTTTTGGATGCTGCTTATTTCTTTTGCAAGTTTCTGTATGTGTTCTTCTGTTGTTCAGGAAAATCCAGATCTATGGAAGTGGTTAACCGGGCAAGAGCAACCCCCTGAAGCCGTGAAGACAAATCCTGTGAGCATCCAAATTAGTGTTTCCCTTTTTATGTTTGGACTAAAAAATATGTGATCTTAGAATTAGAGCATCTATTTGTAGGTATTTACTGATGTGCAAGAGAAGGTGATGAACAATCTCAACAAACATGCCTCACCCGAGACACGAACACCGCCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAACCAGTAGCTCTATCTTCCATTAAAGAATTTTATGTTATAATTAAGTACTAAAGTTTCTCAAACTTGTTTGTTACGAACGGTGGGCTGTGAATAAGTTTCCCATCAAGTCTGTCCCCTCTAAACCCTTGGGATCTATAGTGAAATAATGGCTGTTTTTGTTTCTTTCACATACATTCACCAAATAATTCATCATTTCCAAGTGCTTGCCACCATGGCTAGCTTGCATTTCTTTATAGTTTGTACTTGATGTAATAAGCTTTGTATTAATTTTATAGTTTGCATTAGTATTACGACCTTCAATATCGGGTCATAAACCATCCG

mRNA sequence

ATGGAGGAAAGAAGAAAGGAAAATCCAGATCTATGGAAGTGGTTAACCGGGCAAGAGCAACCCCCTGAAGCCGTGAAGACAAATCCTGTATTTACTGATGTGCAAGAGAAGGTGATGAACAATCTCAACAAACATGCCTCACCCGAGACACGAACACCGCCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAACCAGTAGCTCTATCTTCCATTAAAGAATTTTATGTTATAATTAAGTACTAAAGTTTCTCAAACTTGTTTGTTACGAACGGTGGGCTGTGAATAAGTTTCCCATCAAGTCTGTCCCCTCTAAACCCTTGGGATCTATAGTGAAATAATGGCTGTTTTTGTTTCTTTCACATACATTCACCAAATAATTCATCATTTCCAAGTGCTTGCCACCATGGCTAGCTTGCATTTCTTTATAGTTTGTACTTGATGTAATAAGCTTTGTATTAATTTTATAGTTTGCATTAGTATTACGACCTTCAATATCGGGTCATAAACCATCCG

Coding sequence (CDS)

ATGGAGGAAAGAAGAAAGGAAAATCCAGATCTATGGAAGTGGTTAACCGGGCAAGAGCAACCCCCTGAAGCCGTGAAGACAAATCCTGTATTTACTGATGTGCAAGAGAAGGTGATGAACAATCTCAACAAACATGCCTCACCCGAGACACGAACACCGCCTGGGCAACAATGGGTAAGGGGTTGGGATGATTTCAAGAGAGGTCGGGATGGCCCCATAACAGGAAACCAGTAG

Protein sequence

MEERRKENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFKRGRDGPITGNQ

Homology

[Close]

BLAST of CmoCh04G020530 vs. ExPASy Swiss-Prot
Match: Q9FI44 (Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDHAF2 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 8.6e-29
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLT QEQPPEAV +NPVF+ + EKVM NLNKHA+PETR   GQ WVRGWDDFK
Sbjct: 118 ENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFK 177

Query: 67  RGRDGPITGNQ 78
           RGRD PI+GNQ
Sbjct: 178 RGRDAPISGNQ 188

[Close]

BLAST of CmoCh04G020530 vs. ExPASy TrEMBL
Match: A0A6J1EQG7 (succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111436468 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 7.5e-36
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK
Sbjct: 131 ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 190

Query: 67  RGRDGPITGNQ 78
           RGRDGPITGNQ
Sbjct: 191 RGRDGPITGNQ 201

[Close]

BLAST of CmoCh04G020530 vs. ExPASy TrEMBL
Match: A0A6J1JZA0 (succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111490192 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.2e-35
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLTGQEQPP+AVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK
Sbjct: 131 ENPDLWKWLTGQEQPPKAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 190

Query: 67  RGRDGPITGNQ 78
           RGRDGPITGNQ
Sbjct: 191 RGRDGPITGNQ 201

[Close]

BLAST of CmoCh04G020530 vs. ExPASy TrEMBL
Match: A0A5D3C9Y9 (Succinate dehydrogenase assembly factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001200 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.1e-34
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLTGQEQPPEA+KTNPVFT V+EKVMNNLNKHASPETRTPPGQQWVRGWDDFK
Sbjct: 130 ENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 189

Query: 67  RGRDGPITGNQ 78
           +GRDGPITGNQ
Sbjct: 190 KGRDGPITGNQ 200

[Close]

BLAST of CmoCh04G020530 vs. ExPASy TrEMBL
Match: A0A1S3B413 (succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103485912 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.1e-34
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLTGQEQPPEA+KTNPVFT V+EKVMNNLNKHASPETRTPPGQQWVRGWDDFK
Sbjct: 130 ENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 189

Query: 67  RGRDGPITGNQ 78
           +GRDGPITGNQ
Sbjct: 190 KGRDGPITGNQ 200

[Close]

BLAST of CmoCh04G020530 vs. ExPASy TrEMBL
Match: A0A0A0LKF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072460 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.8e-33
Identity = 65/71 (91.55%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLTGQEQPPEA+KTNPVFT V+EKV++NLNKHASPETRTPPGQQWVRGWDDFK
Sbjct: 195 ENPDLWKWLTGQEQPPEALKTNPVFTGVKEKVIDNLNKHASPETRTPPGQQWVRGWDDFK 254

Query: 67  RGRDGPITGNQ 78
           +GRDGPITGNQ
Sbjct: 255 KGRDGPITGNQ 265

[Close]

BLAST of CmoCh04G020530 vs. TAIR 10
Match: AT5G51040.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 532 Blast hits to 532 proteins in 207 species: Archae - 0; Bacteria - 285; Metazoa - 16; Fungi - 41; Plants - 40; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). )

HSP 1 Score: 127.1 bits (318), Expect = 6.1e-30
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLT QEQPPEAV +NPVF+ + EKVM NLNKHA+PETR   GQ WVRGWDDFK
Sbjct: 118 ENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFK 177

Query: 67  RGRDGPITGNQ 78
           RGRD PI+GNQ
Sbjct: 178 RGRDAPISGNQ 188

[Close]

BLAST of CmoCh04G020530 vs. TAIR 10
Match: AT5G51040.2 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 368 Blast hits to 368 proteins in 141 species: Archae - 0; Bacteria - 216; Metazoa - 8; Fungi - 13; Plants - 40; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). )

HSP 1 Score: 127.1 bits (318), Expect = 6.1e-30
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLT QEQPPEAV +NPVF+ + EKVM NLNKHA+PETR   GQ WVRGWDDFK
Sbjct: 114 ENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFK 173

Query: 67  RGRDGPITGNQ 78
           RGRD PI+GNQ
Sbjct: 174 RGRDAPISGNQ 184

[Close]

BLAST of CmoCh04G020530 vs. TAIR 10
Match: AT5G51040.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631). )

HSP 1 Score: 127.1 bits (318), Expect = 6.1e-30
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 7   ENPDLWKWLTGQEQPPEAVKTNPVFTDVQEKVMNNLNKHASPETRTPPGQQWVRGWDDFK 66
           ENPDLWKWLT QEQPPEAV +NPVF+ + EKVM NLNKHA+PETR   GQ WVRGWDDFK
Sbjct: 127 ENPDLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQPWVRGWDDFK 186

Query: 67  RGRDGPITGNQ 78
           RGRD PI+GNQ
Sbjct: 187 RGRDAPISGNQ 197

The following BLAST results are available for this feature:

BLAST of CmoCh04G020530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FI44	8.6e-29	78.87	Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana...	[more]

BLAST of CmoCh04G020530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQG7	7.5e-36	100.00	succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucurbita moschata O...	[more]
A0A6J1JZA0	2.2e-35	98.59	succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucurbita maxima OX=...	[more]
A0A5D3C9Y9	7.1e-34	94.37	Succinate dehydrogenase assembly factor 2 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3B413	7.1e-34	94.37	succinate dehydrogenase assembly factor 2, mitochondrial OS=Cucumis melo OX=3656...	[more]
A0A0A0LKF9	7.8e-33	91.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072460 PE=4 SV=1	[more]

BLAST of CmoCh04G020530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51040.1	6.1e-30	78.87	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 ...	[more]
AT5G51040.2	6.1e-30	78.87	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 ...	[more]
AT5G51040.3	6.1e-30	78.87	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..77
None	No IPR available	PANTHER	PTHR12469	PROTEIN EMI5 HOMOLOG, MITOCHONDRIAL	coord: 7..77
None	No IPR available	PANTHER	PTHR12469:SF5	FLAVINATOR OF SUCCINATE DEHYDROGENASE	coord: 7..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G020530.1	CmoCh04G020530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006121	mitochondrial electron transport, succinate to ubiquinone
biological_process	GO:0034553	mitochondrial respiratory chain complex II assembly
biological_process	GO:0018293	protein-FAD linkage
biological_process	GO:0006099	tricarboxylic acid cycle
cellular_component	GO:0005739	mitochondrion