CmoCh04G019610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G019610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	tRNA pseudouridine synthase
Location	Cmo_Chr04: 10053525 .. 10061842 (-)
RNA-Seq Expression	CmoCh04G019610
Synteny	CmoCh04G019610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACTTATGGCGGAGTTCAACCTTTAAACTTCCGCGAGAACACTTGCTACATTGTTTAAAGCTTTGGAATCAGTGTTCGATTCTCATAATCTTGGCGGGAGTGGCGGAAATCAATGACGGAGAACCAGAAGCATAGGCTAGAGTTCAGTTCCGATTCATCACCGCAAAGGCCATTGAAAATTGGAAAGACTACGAACGAAGATCTCCTTGGCGATAAGGAGGAAGCGGAATCCATGAACCGTAATCCTGGAATCCAACGCTACCTTGTCGCAGTCGAATATATTGGAACTCGTTTTTCTGGTTCTCAGCAGCAGCCCAACTGTCGTACGGTGGTCGGCGTGCTTGAGGTACACCGCCTTTGCCATCTTTCATTACTCTGCGTATCGTTCTTAACCGATGAAACTCTTTGAAATGGAACATGATTTCTTTGTATCATTAAGAAACGGGTTGAACAATTGGTCTCTTGCATTACTCTATAAATGATTACTTCTACTTCTCAGGAAGCGTTCCGGAAGTTTATCGGTCAATCAGTTTCAGTGTTTTGTTCTAGCAGAACTGTAAGTTTTTCTTATTCTGGATATTTGTTCCTTTTTGTCATATAAAAACCAGTTTTATTGCTGTTATTAGAATGTTCAGTGTACTTGTAGGGTAGCTTCCATGACTTTTATCTTGCTGAATCTTCTGTCCTCCGGTAGTTCTTCTCCCACTAGCTTTGATTTGCGCAGAGTAGGATATGGAACTGAATTGGTAGTTTGATTGTAGGGCTTATGTTCATTTGAGATGCATGGACTTGCCTCTATTGTTCTAAGTCGGATTTTAAAACAAAACCATTGGAACTGTGAGATCCCATATCGGTTGGAGAGGAGAACGAAACATTCATTATAAGGGTGTAGAAACCTCTCCCTGACAGACGCGTTTTAAAACTGTGAGGCTGATGGCGATAGATAACGGGCCAAAGCGGACAATATCTGTTAGCGATGAGCTTGGGCTGTTACAAATGGTATCAGAGCCAGACACCGAGCGGTGTGCTAGCGAGGGCACTGGCCCCCAAGGGGGTGGATTGTGAGATCCCACATTGGTTGAAGAGGAGAATGAAGCATTCCTTATAAGGGTGTAGAAACCTCTCCCTGACAGACGCGTTTTAAAATAGTGAGGCTGACGACGATACATAACGGGCCAAAGCGGACAATATCTGTTAGTGTTGGGCTTGGGTTGTTACAAATGGTATCAGAGCCAGACACTGAGCGGTGTGCCAGCGAGGGCACTGGCCCCCAAGCGGGGTGGATTGTGAGATCCCACATCGGTTGGAGATGGGAACGAAGTTTTCCTTATAAGGGTGTGAAAACGTCACCCTAACAGACATATTTTAAAATCGGAAGGCTGACGATGATACATAACGGGCCAAAGTGGATAGTATTTGTTAGAGCCAGGCACCGAGCGGTGTGCTAGCAAAGACCCTAGCCCCCAAGGGGGTGGATTGTGAGATCTCACATCGTTTGGAGAGGGGAATGAAGCATTCCTTATAAGGGCGTGGGAACCTCTCCTAACAAACGCATTTTAAAATCGTGAAATTGATGGCATACATAATGGGCCAAAGCAGACAATATCTGTTAGTGGTGAGCATGAGCTGTTACTGGAGCATTTTAGGATAAGTTGTTTTTCTGGCTTGTTTGCTGCAGACTGCAGTTCATCTTGCTCCATATTCACCTGTTCTGAGTTGTGCTTGGTAGAAAGGGATCCGTTATTGAGCTGCTCTATTGACTTGATTGATTGCTTTGATAATCGTATTCCCATGCGTCACATTACATGTCTTGCTACCATAAGTAGATTAAGTTATCCCATTCACGTTGTGACTTTCCTTCTTTTTTCAATGAAGGATGCTGGAGTACATGCCTTATCAAATGTTTGTCATGTTGATGTTGAGCGCATAAGCAAAAGAAAGCCTGGAGAAGTGGTTTGTCCCTTTGTATAGAATATAAGCATCTCTCTCCCCTTTTCATATGTACACATACTATATGCTAACTAGATGAGTAATTTCCCCTGAAAACTTTTGTTCACTCGTGGACTTTGTTGTTGAGATAAAACTTTCTTATCCTTGAAAACATGAGTTTGAAGTAATGGTGCTCAACTTTGCTACAGAGATGCTAACTTCTTTTTCCTAACTATGATGCAGTTACCACCTCATGAACCGAGTGTCGTTCGTAGGGCCGTGAATCATTTCTTACAGGTTCGGTTCTCTGCTAGCCAATCCCTTTTTTGAGCTACTTTTGCTTCTCTCGATTTTCGTTGTTTCGATCTTGTGCTTCATTTTTAACTCAACGATGCTAAGTTATAGTCGTGTTAAAATTTCCATTTTCAAACTATAAAATTTATCTTCCCTTTTACCAGTACTATTGACTATTGTTCATAGGCGATAGATAAGCGAGTGTAACGGCTCAAGCCCCCCACCGCTAGCAGATATTGTTCTCTTTGGAATTTCCGTTTCGTGCTTCCTCCCAAAGTTTTAAAATGTGTCTGCTAGGGAGAGGTTCCCACACCAAGGATGTTTTGTTCCCCTATCCAACTTATGTGGGATCTCACAATCCACCCCCTTCGGGGCCCAGCATTCTTGCTGGCACACCGCCTGGTGCCCAACCCCCCTTCAGGGCTCAGCCTCTTCACTGGCACATCGCTCATTGTTTGGCTCTGATACCATTTGAAACGGTCTAAGCCCACCGCTAACAGATATTGTTCTCTTTGGGCTTTTCTTTCCACACTTCCCCTCGAGGTTTTAAAACGTGTCTGCTAAGGAGAGGTTTCTACACCCTTATAAAGAATGTTTCTGTAACGACCCGACTTATCTTATAAGTAGCGGTTCGGGCCGTTACAAAAAATAATTTTATTTATTTAAAAATTAATGAAAACTATGCCAAAATGATCATTTATTAAAATAAGGTGTGGGTACTCCTAGGTTAAAAACATGTGGCCTAACAACCTTTAAAAGGTTAAAAACATGCGAAAACATGTGGCCTAACAACCTTTAAAAGGTTAAAAACATGTGGCCTAACAACCTTTAAAAGGTTAAAAACATGCGAACTAAAAATGGTCAAACAACGTAGGAAATTAAAATCAAAAGGGAATTTGGTGTGACCGTCTAGTTCCCATAAACTAGGCGTCCACAAATATAATTTAAATTAATAAAAGTGCGAAAACGTCTATCCATCCAAATAAAATTCCAATAAACATAAACTCCTTGAGTCGCCCCATGACTGACTTTGGTCGCCCCATGACTGACTTTGGTCGCCCCATGACTGACTTTGGCATCCCATGACTAACTCCGTGCCACAACTTCGCCTGGTTAATGAAACTCTGAGTCGCCCCATGACTGACTTGGCATCCCATGACTAACTCCGTGCCACAACTTCGCCTGAAAACCATTTTTAAAATAGGGTGAGTACTCAGTAAGGAACTCCCTATTGGGGTCAAATACATAAAACTCTGTGCCACAACTTTGCCTGAAAACCATTTTAAAAACAGGGTGAGTATAAACCATTTTAAAAACAGGAATACTCAGTAAGGAACTCCCCTATTGAGGTCAAATACATAAATCGTCACAAGGTGATTAACCACTAGGGTCCCTCGATTTTGGTTAATCACCCGAAACATGCAGCGGGTGATTATTGCCACAAGAAAATCAACGCCCACCTTTTCCTTAAAATGATTAACCTTGGCTGGTTACTCGAAACGCATAGCGTGTAACCATTACCACAAGAAAATCAACATTCTTCCTTATTTTCTTAAAATGACTATCCACGGTTGGTTACTCGAAACACATAGCGTGTAACCATTAACACAAGGAAATCAACATCCTTCCTTACTTCCTTAAAATGACTATCCACGTCTGGTTACCCGAAACACACAGCATGTAACCCTTACTTTGATGGTCATTTTCTACAATCATCATCGATGGTGAATATTAGCTGCTAGTTACCCGAAACACACAGTGTCTAACTATTACCACAATTCCTTAACCATTGCCACCAACTAACACAATATGCATGCAATAGGTCCCAAAACGTAAAACGTTGGATTTCATGAACCCACGTATATTGCATCATACAACTCACATCGAACCTAATCATCAAATACCTACCCACATACAACAGTTTATATAGTGTTTAATAGTCATCAATTATCCAATATTTATTGCCCACCCAATCATCAAATACAACTACACATTCAACCATTTATACAGTCATCAATTACCCAATATTTATCGCCAACACACAACACACAATACACAACCAACAGAACACACAACACACAACCAACAGATTACATAGCACACAACCATGGGGCAAATCCATTCGACCCTTTTTAAAAAACAAAACATTTAGTTTCAACAGGAGGGTTCCTTACCTGGAGTGCTCCTTTCCTCATCGTTCCTATAGTCGCTCCGACTTAGATCGAGCCTGCTGTCCACGTCGAGGTTGGTTCCAATCCTATCTATCCCTAGAGGAAACAATGTTATATCTTTGCTGCGTTTAATCCTCTTAATGTCGATTTTGGCGACGGAGTTCACTCGTAGCGGTGATGTGGTTGCTGGATGGTGGTTTTTTGATGTGCGAAGGGGCACGAGGTGATGTGGGAAATAGTCAGCGACGGGACGACGTGGACTTTGGGTGGCAGCGGCTTAAGGAAGAAGATGACAAAGAACGAAGGAAGGGCGGCGGGCGGCTTAGGGTTTGTTGTGGCTGACTTGCCTCTAGCTTCGTGCAAAAACTAATGAGGTTGGCGGCTCGCTAAGGGTTTGGCTAAAATGGCTGAACCCTAGGACTTATTGATTGTATTTTTATAATTATTATTTTGTATTTCTTGATTTTGTATGGGAAAATAGGCAAATTTAGATAGGATTGGAACCAATCTCTACGTGGACAGCAGGCTCGATTTAAGTCGAAGCGAACCAATAGCTGTAGGAACGATTAGTAAATGAGCTCTCTAGGTAAGGGACCCTTTTGTTGAAACTAAATGTTTTGTTTTTAAAAAAGGGTCAAGCAAATTTGTCATATGGTTGTGCGCTGTGGGTTGTGTAATTGGTTGGTGGGCGATAAATATTGGGTCATTGATGACTGTTAAACACACGGTATAAATTGTTGAATGTGTGTAGTTGTATTTGATGATTGGATTCGATGTGAGTAGTATGACACAATATACGTGTGTTCATGAAATCCAACATTTTACATTTTGGGACCTATTGCATGCATATTGTGTTTATTGGTGGTGATGGTTAAGGGACTTGTAATAATAGTTACACGCCGTGTGTTTCGAGTAACTAGCCACTAATAATCACTTTCGGTGATGATGGTAGAAAATAACTATCAAGGTAAGGATTACACGCTGTGTGTTTCGGGTAACCAGCCGTGGATAGTCATATTAAGGAAATAAGGAAGGATGTTGATTTCCTCGTGGTAATGGTTACATGTTGTGTGTTTCGGGGTTTTACGTTTTGGGACCTATTGCATGCATATTGTGTTTATTGGTGGTGATGGTTAAGGGACTTGTGATAATAGTTACACGTTGTGTGTTTCGGGTAACTAGCCACTAATAGTCACTTTCGGTGATGATGGTAGAAAATGACTATTAAGGTAAGGGTTACACGCTCTGTGTTTCGGGTAACCTACCAGGGATAATCATTTTAAGGAGTAAAGGTGGGCGTTGATTTTCTTGTGGCAATAATCACCCGCTGCGTGTTTCGGGTGATTAACCACTAGGGTCCCTCGATTTTGGTTGATCGTCTTGTGACGATTTATGTATTTGACCCAATAGGGGAGTTCCTTAGTGAGTATTTCCTATTTTTAAAATGGTTTTCAGGCGAAGCTGTGTCACAGGTGACGAGTGGGATGCCCAAGTCAGTCATGGGGCGACTCAAGGAGTTTATGTTTATTGGAATTTTATTTTGATGGATAGACGTTTTCGCACTTTTGTTTATTAATTTAAATTATGTGTGTGAACGCCTAGTTACGGAACCAGATGGTCACACCAGATTACCTTTTGATTTTAATTTTTAGGCGGCATGTTTCTAACCTTGTAAGGGTACCCACACCTTATTTTAATAAATGATCGTTTTTGCATAGTTTTCATTAATTTTTAAATAAATCAAATTATTTTTTGTAACGGCCTTGACCGCTACTTATAAGATAAGTCGGGTCGTTACAGAAACATTCTTTATAAGGGTGTGGAATCCTCTCTTTAGCAGACACATTTTAAAACCTCTTTATGTTTAAACATTTTTATGCGGCATGTTTTTAACCTTTTGAAGTTGAAGGTACCCCGCACATGATTTTAATAAATGATCGTTTTTGCATACTTTTCATTAATTTTTATATAAATCAAATTATTTTTGGTAACGGCCATGACCACTACTTATAAGATAAATCGAGTCGTTACAAATGGTATTAGAGCTAGACACCGGACTATATACCAGCGAGGAGGCTGTTCCCAGAAGGGGGTAGACACGAGGCAATGTGCAGTAAGGATGCTGGGGTCCCACATCAATTGGATGAAGGAAAGAGTGTCAGCGAGGATGCTAGGCCCTGAAGGGGGGTGGATTGCAATGTCCCACATTGGTTGGTGAGGAGAACAAAACACCCTTTATAAGGGTGTGGAAACCTTCTTCTAGCAGACGTGTTTTAAAGCCTTGAGGGGAAGGCCAAAAGGGAAAGCCCAAAGAGGACAATATCTACTAGCAGTGGGCCTGGGTCGTTACAGTTTCGCTTCCCTCTCCAACCGATGTGGATTCTCACAGCGAGCACCTAAGAAGAATCTTCCTTTTTCCAGCTTGAACCTTTGCTTTCTATTGTATGAGACAAAGAAAATGATGAAAGGTATCTGTCTGTTTTGATTCCAGAAAAATGACGGCGATGTTACGGTAGTTGATGTTCGAAGTGTTCCTAATGATTATCATGCGAGATATAAAGCTCAAGAGCGTACGTGAGTATTGTCCATCCAGTTGATACCATCGTTGCCTGTTAGACAGTAGAATTAATTGTCCATACGTACATAACACAATTTTTTGTATCTCATGAAACATTTTCAGATACTTTTATCGGTTAGTTTCTGGGCCAGAAACTTTGTCAAGCTTTGACAAGGATCGAGTATGGCACGTGCCCGAGATACTGAATATTGGAGCCATGCAGGTATGAACAATTAACAGTGCAATGCTGGAGATCAAGTCGATTTCGAATTACATTCAGGAACTGATACAACATTATTGGAATGTATGAATTCAGGAGGCATGTAAAGTGCTTGTTGGGCATCATGACTTCAGCTCCTTCAGGGCTGCTGGTTGTCAGGTCACTTAATACTAAAACTATTTATGTTCCCAGCTTATTATACATTTTGTTTGTAACAAAGCCAGGGCGTGGTCGGGGGACGAAACTGTGTACGGTGTAATGTAAATTAGTTTCGATGTGCAGTGCAGGCAAACTCCCCAATGAGAACTCTTGATGAACTAGACGTTTGTGAGGTGGTTTCGACGCCTTATTTTCCATCGTCAATGGAGCGAAAGCAAAGGCAGGGCAAAGAAGAAGGTGAGAATGGAGTGCTACATTCTGAAAGTTATGAGGTTGGATTTGGGATCAGGAGAAGGCATCGTTGTTTCGTTGTGACAGCACGGGCACGCTCGTTTCTCTATCATCAGGTAATAAACATAACCAACACTAAGAGACTGTTTCTTTTCTTGTTCTGAGGAAAAGGGTTTTACGAGATTGATTGATTAGTTATTCTGGACTCAAATATTTCTTAGGTGAGACTGATGGTTGGCGTTCTTAAAGCGGTCGGAACCGGAGATCTAACCGTAGGAGATGGTAGGTGGTTGGACTGCAACATATACAATAGAACATGGCCGTTTGAAGGTAGCTAGCTAACAGTAGTATGGTCTTCTGTGTTGTTTGCTGCAGTGGAAAGAATCTTGGAAGCGAAGAATGTGAGTTCAGCAAGTCCGATGGCTCCTGCCTGTGGACTCTACCTAGGACATGTCAAATATGATCTACCGCCGCCACCGCCGGCGCCCACTGAATGAAACCGGAGGTTCCTTTCTTTTCACTTCCAATGTTATTTATTTATATTGATTGCCGATGCAACTCTCCTTATTGTTGACATTAGAAAATCTATGGTTGAGCTGAACCCAATCCCCATCCCATTCTGTACGGATGTCTTCTCCTTTTTATGATCACTCAATTTTAATGCTCAACTTGTAACGACGGCCCAGATCCACCGCTAGCAGAATTGTCCTCTTTAGGTTTTCCCTTTCGGGCTTCCCTCCAAAACTTTAAAACGCG

mRNA sequence

CAACTTATGGCGGAGTTCAACCTTTAAACTTCCGCGAGAACACTTGCTACATTGTTTAAAGCTTTGGAATCAGTGTTCGATTCTCATAATCTTGGCGGGAGTGGCGGAAATCAATGACGGAGAACCAGAAGCATAGGCTAGAGTTCAGTTCCGATTCATCACCGCAAAGGCCATTGAAAATTGGAAAGACTACGAACGAAGATCTCCTTGGCGATAAGGAGGAAGCGGAATCCATGAACCGTAATCCTGGAATCCAACGCTACCTTGTCGCAGTCGAATATATTGGAACTCGTTTTTCTGGTTCTCAGCAGCAGCCCAACTGTCGTACGGTGGTCGGCGTGCTTGAGGAAGCGTTCCGGAAGTTTATCGGTCAATCAGTTTCAGTGTTTTGTTCTAGCAGAACTGATGCTGGAGTACATGCCTTATCAAATGTTTGTCATGTTGATGTTGAGCGCATAAGCAAAAGAAAGCCTGGAGAAGTGTTACCACCTCATGAACCGAGTGTCGTTCGTAGGGCCGTGAATCATTTCTTACAGAAAAATGACGGCGATGTTACGGTAGTTGATGTTCGAAGTGTTCCTAATGATTATCATGCGAGATATAAAGCTCAAGAGCGTACATACTTTTATCGGTTAGTTTCTGGGCCAGAAACTTTGTCAAGCTTTGACAAGGATCGAGTATGGCACGTGCCCGAGATACTGAATATTGGAGCCATGCAGGAGGCATGTAAAGTGCTTGTTGGGCATCATGACTTCAGCTCCTTCAGGGCTGCTGGTTGTCAGCTTATTATACATTTTGTTTGTAACAAAGCCAGGGCGTGGTCGGGGGACGAAACTGTGTACGGTGCAAACTCCCCAATGAGAACTCTTGATGAACTAGACGTTTGTGAGGTGGTTTCGACGCCTTATTTTCCATCGTCAATGGAGCGAAAGCAAAGGCAGGGCAAAGAAGAAGGTGAGAATGGAGTGCTACATTCTGAAAGTTATGAGGTTGGATTTGGGATCAGGAGAAGGCATCGTTGTTTCGTTGTGACAGCACGGGCACGCTCGTTTCTCTATCATCAGGTGAGACTGATGGTTGGCGTTCTTAAAGCGGTCGGAACCGGAGATCTAACCGTAGGAGATGGTAGGTGGTTGGACTGCAACATATACAATAGAACATGGCCGTTTGAAGTGGAAAGAATCTTGGAAGCGAAGAATGTGAGTTCAGCAAGTCCGATGGCTCCTGCCTGTGGACTCTACCTAGGACATGTCAAATATGATCTACCGCCGCCACCGCCGGCGCCCACTGAATGAAACCGGAGGTTCCTTTCTTTTCACTTCCAATGTTATTTATTTATATTGATTGCCGATGCAACTCTCCTTATTGTTGACATTAGAAAATCTATGGTTGAGCTGAACCCAATCCCCATCCCATTCTGTACGGATGTCTTCTCCTTTTTATGATCACTCAATTTTAATGCTCAACTTGTAACGACGGCCCAGATCCACCGCTAGCAGAATTGTCCTCTTTAGGTTTTCCCTTTCGGGCTTCCCTCCAAAACTTTAAAACGCG

Coding sequence (CDS)

ATGACGGAGAACCAGAAGCATAGGCTAGAGTTCAGTTCCGATTCATCACCGCAAAGGCCATTGAAAATTGGAAAGACTACGAACGAAGATCTCCTTGGCGATAAGGAGGAAGCGGAATCCATGAACCGTAATCCTGGAATCCAACGCTACCTTGTCGCAGTCGAATATATTGGAACTCGTTTTTCTGGTTCTCAGCAGCAGCCCAACTGTCGTACGGTGGTCGGCGTGCTTGAGGAAGCGTTCCGGAAGTTTATCGGTCAATCAGTTTCAGTGTTTTGTTCTAGCAGAACTGATGCTGGAGTACATGCCTTATCAAATGTTTGTCATGTTGATGTTGAGCGCATAAGCAAAAGAAAGCCTGGAGAAGTGTTACCACCTCATGAACCGAGTGTCGTTCGTAGGGCCGTGAATCATTTCTTACAGAAAAATGACGGCGATGTTACGGTAGTTGATGTTCGAAGTGTTCCTAATGATTATCATGCGAGATATAAAGCTCAAGAGCGTACATACTTTTATCGGTTAGTTTCTGGGCCAGAAACTTTGTCAAGCTTTGACAAGGATCGAGTATGGCACGTGCCCGAGATACTGAATATTGGAGCCATGCAGGAGGCATGTAAAGTGCTTGTTGGGCATCATGACTTCAGCTCCTTCAGGGCTGCTGGTTGTCAGCTTATTATACATTTTGTTTGTAACAAAGCCAGGGCGTGGTCGGGGGACGAAACTGTGTACGGTGCAAACTCCCCAATGAGAACTCTTGATGAACTAGACGTTTGTGAGGTGGTTTCGACGCCTTATTTTCCATCGTCAATGGAGCGAAAGCAAAGGCAGGGCAAAGAAGAAGGTGAGAATGGAGTGCTACATTCTGAAAGTTATGAGGTTGGATTTGGGATCAGGAGAAGGCATCGTTGTTTCGTTGTGACAGCACGGGCACGCTCGTTTCTCTATCATCAGGTGAGACTGATGGTTGGCGTTCTTAAAGCGGTCGGAACCGGAGATCTAACCGTAGGAGATGGTAGGTGGTTGGACTGCAACATATACAATAGAACATGGCCGTTTGAAGTGGAAAGAATCTTGGAAGCGAAGAATGTGAGTTCAGCAAGTCCGATGGCTCCTGCCTGTGGACTCTACCTAGGACATGTCAAATATGATCTACCGCCGCCACCGCCGGCGCCCACTGAATGA

Protein sequence

MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTRFSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHFVCNKARAWSGDETVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIYNRTWPFEVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE

Homology

[Close]

BLAST of CmoCh04G019610 vs. ExPASy Swiss-Prot
Match: Q2WAT0 (tRNA pseudouridine synthase A OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=truA PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.5e-40
Identity = 119/344 (34.59%), Postives = 157/344 (45.64%), Query Frame = 0


Query: 49  RYLVAVEYIGTRFSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVC 108
           RY + VEY GT F+G Q+Q    +V G+LE+A  K  G   ++  + RTDAGVHA   V 
Sbjct: 3   RYRLLVEYDGTPFNGWQRQDKGLSVQGILEKAVEKLCGVPCTLHAAGRTDAGVHATGQVA 62

Query: 109 HVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQER 168
           HVD+ R            +    VR A+N+ ++     V VV    V  D+HAR+ A  R
Sbjct: 63  HVDLPR-----------DYPADTVRDALNYHMKPK--PVAVVAAELVDEDFHARFSAVGR 122

Query: 169 TYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHF 228
            Y YR+V+    L + D+ R W VP  L+  AM E  + L+GHHDFS+FRA+ CQ     
Sbjct: 123 AYLYRIVNRRAPL-ALDQHRAWWVPVALDAEAMAEGARRLLGHHDFSTFRASECQ----- 182

Query: 229 VCNKARAWSGDETVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHS 288
                           A SPM+TLD LDV                               
Sbjct: 183 ----------------AKSPMKTLDVLDVT------------------------------ 242

Query: 289 ESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIYNR 348
               VG  IR       + A ARSFL+HQVR MVG LK        VG+G+W        
Sbjct: 243 ---RVGEEIR-------IVAEARSFLHHQVRNMVGTLK-------LVGEGKWS------- 255

Query: 349 TWPFEVERILEAKNVSSASPMAPACGLYLGHVKYDLPPPPPAPT 393
             P ++ ++LEA++ +   P APA GL L  V Y        PT
Sbjct: 303 --PDDMAKVLEARDRTKGGPTAPAAGLVLTGVSYSASGGKSGPT 255

[Close]

BLAST of CmoCh04G019610 vs. ExPASy Swiss-Prot
Match: A7IKI9 (tRNA pseudouridine synthase A OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) OX=78245 GN=truA PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-39
Identity = 116/334 (34.73%), Postives = 159/334 (47.60%), Query Frame = 0


Query: 49  RYLVAVEYIGTRFSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVC 108
           RY + +EY GT ++G Q Q + +TV G L +AF++F G+ V V  + RTDAGVHA   V 
Sbjct: 3   RYKLTIEYDGTPYAGWQIQADQQTVQGALAQAFKRFCGEDVHVAGAGRTDAGVHATGQVA 62

Query: 109 HVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQER 168
           HVD+ R                 VR A+   L+ +   + V+    VP+ + AR+ A +R
Sbjct: 63  HVDLSR-----------HWRSDTVRDAMTAQLRPH--PIAVLSAEEVPDSFDARFSATKR 122

Query: 169 TYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHF 228
            Y YR+++    L + D+DR W +P+ L+  AM EA + L+G HDFS+FRAA CQ     
Sbjct: 123 HYLYRIINRRPDL-ALDRDRAWRIPQKLDAQAMHEAAQRLLGKHDFSTFRAAECQ----- 182

Query: 229 VCNKARAWSGDETVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHS 288
                           A SP++TLD+LDV                 R G E         
Sbjct: 183 ----------------AASPLKTLDQLDV----------------SRSGDE--------- 242

Query: 289 ESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIYNR 348
                   IR       V   ARSFL+HQVR MVG L       + VG+GRW        
Sbjct: 243 --------IR-------VITSARSFLHHQVRSMVGSL-------MRVGEGRWS------- 245

Query: 349 TWPFEVERILEAKNVSSASPMAPACGLYLGHVKY 383
               ++E  L+A + +   PMAPA GLYL  V Y
Sbjct: 303 --ADDLEAALKAADRTRCGPMAPAAGLYLAAVSY 245

[Close]

BLAST of CmoCh04G019610 vs. ExPASy Swiss-Prot
Match: B6IPI0 (tRNA pseudouridine synthase A OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=truA PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.5e-39
Identity = 118/336 (35.12%), Postives = 156/336 (46.43%), Query Frame = 0


Query: 47  IQRYLVAVEYIGTRFSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSN 106
           +QR+ + +EY G  F G Q+Q N  +V   LEEA  +F  ++V+VFC+ RTDAGVHAL+ 
Sbjct: 1   MQRWKLTLEYDGRPFVGWQRQDNGPSVQQALEEAIYRFTQETVTVFCAGRTDAGVHALAM 60

Query: 107 VCHVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQ 166
           V  VD+ R +               V+ A+N  L+ +   V V+ V  V  D+HAR+   
Sbjct: 61  VASVDLAREA-----------TADKVQAALNFHLKPH--PVAVLRVEPVAPDFHARFSCL 120

Query: 167 ERTYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLII 226
            R Y YR+++     ++ +  RVWHV   L+  AM EA + LVG HDFSSFRA+ CQ   
Sbjct: 121 GRAYLYRILN-RRAPAALEAGRVWHVQGGLDAEAMHEAAQRLVGQHDFSSFRASLCQ--- 180

Query: 227 HFVCNKARAWSGDETVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVL 286
                             A SP++TL +L V                             
Sbjct: 181 ------------------AKSPVKTLSDLSVA---------------------------- 240

Query: 287 HSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIY 346
                 VG  +R       + ARARSFL+HQVR MVG LK VG G  T  D         
Sbjct: 241 -----RVGEEVR-------IVARARSFLHHQVRNMVGTLKLVGEGRWTADD--------- 245

Query: 347 NRTWPFEVERILEAKNVSSASPMAPACGLYLGHVKY 383
                  V R L A+N S+A P APA GLY     Y
Sbjct: 301 -------VSRALAARNRSAAGPTAPAAGLYFTEAWY 245

[Close]

BLAST of CmoCh04G019610 vs. ExPASy Swiss-Prot
Match: A7HPQ3 (tRNA pseudouridine synthase A OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=truA PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.6e-38
Identity = 110/335 (32.84%), Postives = 158/335 (47.16%), Query Frame = 0


Query: 49  RYLVAVEYIGTRFSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVC 108
           RY + +EY G+ F G Q Q N R+V  VLEE  + F GQ + +F + RTDAGVHAL  V 
Sbjct: 3   RYKLTIEYDGSPFVGWQAQTNGRSVQQVLEEGIKGFCGQELKIFGAGRTDAGVHALGQVA 62

Query: 109 HVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQER 168
           HVD E            P  P  +R AVN  ++ +   V +V+   VP+ + AR+ A +R
Sbjct: 63  HVDFE-----------TPVAPDTLRDAVNAHMRPH--PVAIVEAEEVPDSFEARFSAVKR 122

Query: 169 TYFYRLVSGPETLSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHF 228
            Y YR+V+    L + D+ + W V + L+  AM +A + LVG+HDF++FR+  CQ     
Sbjct: 123 HYMYRIVNRRAPL-TLDRGQAWLVHKTLDADAMHDAAQALVGNHDFTTFRSVQCQ----- 182

Query: 229 VCNKARAWSGDETVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHS 288
                           A SP++T+DE+ V                             ++
Sbjct: 183 ----------------AKSPVKTVDEISVSR---------------------------YA 242

Query: 289 ESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIYNR 348
           +  E             +  RARSFL++QVR  VG LK        VGDG W        
Sbjct: 243 DEIE-------------IVCRARSFLHNQVRSFVGTLK-------MVGDGSWT------- 246

Query: 349 TWPFEVERILEAKNVSSASPMAPACGLYLGHVKYD 384
               +VE+ L AK+ ++  P+AP  GLYL  V Y+
Sbjct: 303 --RRKVEKALAAKDRAACGPVAPPDGLYLLQVDYE 246

[Close]

BLAST of CmoCh04G019610 vs. ExPASy Swiss-Prot
Match: A9ILJ7 (tRNA pseudouridine synthase A OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=truA PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.6e-38
Identity = 106/338 (31.36%), Postives = 162/338 (47.93%), Query Frame = 0


Query: 47  IQRYLVAVEYIGTRFSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSN 106
           + R+ + +EY G+ ++G Q+Q    T+ G LE+A  +F GQ +++  + RTDAGVHA   
Sbjct: 1   MSRFKLTLEYDGSNYAGWQRQAKLHTIQGALEQAIFRFSGQQLTITTAGRTDAGVHATGQ 60

Query: 107 VCHVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQ 166
           V HVD  +          PPH    VR A+N  L++    +++++V +VP+D+ AR+ A 
Sbjct: 61  VAHVDFIK--------NWPPH---TVRDALNALLRQQSEAISILNVENVPDDFDARFSAI 120

Query: 167 ERTYFYRLVS--GPETLSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQL 226
           +R Y +++++   P  L++    RVW +P+ LN  AM EA + LVG HDF++FR+A CQ 
Sbjct: 121 KRHYLFKILNRRSPPALNA---KRVWWIPKPLNAQAMHEAAQKLVGQHDFTTFRSAHCQ- 180

Query: 227 IIHFVCNKARAWSGDETVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENG 286
                               A SP+RTL+ LD+                Q++G+E     
Sbjct: 181 --------------------AKSPIRTLERLDI----------------QKEGEE----- 240

Query: 287 VLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCN 346
                                + A+ARSFL+HQ+R   G L  VG G  T  D       
Sbjct: 241 -------------------IFIYAKARSFLHHQIRSFAGSLMEVGIGRWTAQD------- 247

Query: 347 IYNRTWPFEVERILEAKNVSSASPMAPACGLYLGHVKY 383
                    +E  L AK+      +AP  GLYL  V+Y
Sbjct: 301 ---------LEAALHAKDRKRCGVVAPPSGLYLTKVEY 247

[Close]

BLAST of CmoCh04G019610 vs. ExPASy TrEMBL
Match: A0A6J1GY72 (tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111458281 PE=3 SV=1)

HSP 1 Score: 703.4 bits (1814), Expect = 5.5e-199
Identity = 356/393 (90.59%), Postives = 356/393 (90.59%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120
           FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120

Query: 121 GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180
           GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET
Sbjct: 121 GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180

Query: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHFVCNKARAWSGDE 240
           LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQ                 
Sbjct: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQ----------------- 240

Query: 241 TVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRR 300
               ANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRR
Sbjct: 241 ----ANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRR 300

Query: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIYNRTWPFEVERILEA 360
           HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD                VERILEA
Sbjct: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD----------------VERILEA 356

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 394
           KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE
Sbjct: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 356

[Close]

BLAST of CmoCh04G019610 vs. ExPASy TrEMBL
Match: A0A6J1KFZ8 (tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111492882 PE=3 SV=1)

HSP 1 Score: 688.7 bits (1776), Expect = 1.4e-194
Identity = 349/393 (88.80%), Postives = 351/393 (89.31%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKHRLEFSSDSSPQRPLKIGKTTNEDL GDKEEAESMNRNPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120
           FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120

Query: 121 GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180
           GEVLPPHEP VVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET
Sbjct: 121 GEVLPPHEPGVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180

Query: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHFVCNKARAWSGDE 240
           LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQ                 
Sbjct: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQ----------------- 240

Query: 241 TVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRR 300
               ANSPMRTLDELDVCEV+STPYFPSSMERKQRQGKEEGEN VLHSESYEVGFGIRRR
Sbjct: 241 ----ANSPMRTLDELDVCEVISTPYFPSSMERKQRQGKEEGENEVLHSESYEVGFGIRRR 300

Query: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIYNRTWPFEVERILEA 360
           HRCFVVTARARSFLYHQVRLMVGVLK VGTGDLTVGD                VERILEA
Sbjct: 301 HRCFVVTARARSFLYHQVRLMVGVLKVVGTGDLTVGD----------------VERILEA 356

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 394
           KNVSSASPMAPACGLYLGHVKYDLPPP PAP+E
Sbjct: 361 KNVSSASPMAPACGLYLGHVKYDLPPPLPAPSE 356

[Close]

BLAST of CmoCh04G019610 vs. ExPASy TrEMBL
Match: A0A5D3CZZ6 (tRNA pseudouridine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002730 PE=3 SV=1)

HSP 1 Score: 616.7 bits (1589), Expect = 6.7e-173
Identity = 313/388 (80.67%), Postives = 327/388 (84.28%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKH LE S DSS QRPLKIGKTT++   GD+EEAE+MN  PGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHGLELSIDSSSQRPLKIGKTTDQVFHGDEEEAETMNPKPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120
           FSGSQQQPNCRTVVG LEEAF+KFIGQ VSVFCSSRTDAGVHALSNVCHVDVERISKRKP
Sbjct: 61  FSGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120

Query: 121 GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180
           GEVLPPHEP VV +AVNHFLQK++GDVTVVDVRSVPND+HARYKAQERTYFYRLVSGPE 
Sbjct: 121 GEVLPPHEPGVVHKAVNHFLQKHEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEA 180

Query: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHFVCNKARAWSGDE 240
           LSSF+KDR WHVPE LNIGAMQEACKVLVGHHDFSSFRAAGCQ                 
Sbjct: 181 LSSFEKDRAWHVPETLNIGAMQEACKVLVGHHDFSSFRAAGCQ----------------- 240

Query: 241 TVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRR 300
               ANSP+RTLDEL+VCEV STPYFP+SMERKQRQGKEE EN   HSE+ EVGFGIRRR
Sbjct: 241 ----ANSPIRTLDELNVCEVASTPYFPTSMERKQRQGKEESENEEPHSETCEVGFGIRRR 300

Query: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIYNRTWPFEVERILEA 360
           HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD                VERILEA
Sbjct: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD----------------VERILEA 351

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPP 389
           KNVSSA PMAPACGLYLGHVKYDLPP P
Sbjct: 361 KNVSSARPMAPACGLYLGHVKYDLPPAP 351

[Close]

BLAST of CmoCh04G019610 vs. ExPASy TrEMBL
Match: A0A1S3BDG9 (tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488841 PE=3 SV=1)

HSP 1 Score: 616.7 bits (1589), Expect = 6.7e-173
Identity = 313/388 (80.67%), Postives = 327/388 (84.28%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKH LE S DSS QRPLKIGKTT++   GD+EEAE+MN  PGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHGLELSIDSSSQRPLKIGKTTDQVFHGDEEEAETMNPKPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120
           FSGSQQQPNCRTVVG LEEAF+KFIGQ VSVFCSSRTDAGVHALSNVCHVDVERISKRKP
Sbjct: 61  FSGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120

Query: 121 GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180
           GEVLPPHEP VV +AVNHFLQK++GDVTVVDVRSVPND+HARYKAQERTYFYRLVSGPE 
Sbjct: 121 GEVLPPHEPGVVHKAVNHFLQKHEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEA 180

Query: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHFVCNKARAWSGDE 240
           LSSF+KDR WHVPE LNIGAMQEACKVLVGHHDFSSFRAAGCQ                 
Sbjct: 181 LSSFEKDRAWHVPETLNIGAMQEACKVLVGHHDFSSFRAAGCQ----------------- 240

Query: 241 TVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRR 300
               ANSP+RTLDEL+VCEV STPYFP+SMERKQRQGKEE EN   HSE+ EVGFGIRRR
Sbjct: 241 ----ANSPIRTLDELNVCEVASTPYFPTSMERKQRQGKEESENEEPHSETCEVGFGIRRR 300

Query: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIYNRTWPFEVERILEA 360
           HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD                VERILEA
Sbjct: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD----------------VERILEA 351

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPP 389
           KNVSSA PMAPACGLYLGHVKYDLPP P
Sbjct: 361 KNVSSARPMAPACGLYLGHVKYDLPPAP 351

[Close]

BLAST of CmoCh04G019610 vs. ExPASy TrEMBL
Match: A0A1S3BDY4 (tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488841 PE=3 SV=1)

HSP 1 Score: 614.8 bits (1584), Expect = 2.6e-172
Identity = 312/388 (80.41%), Postives = 326/388 (84.02%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKH LE S DSS QRPLKIGKTT++   GD+EEAE+MN  PGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHGLELSIDSSSQRPLKIGKTTDQVFHGDEEEAETMNPKPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120
           FSGSQQQPNCRTVVG LEEAF+KFIGQ VSVFCSSRTDAGVHALSNVCHVDVERISKRKP
Sbjct: 61  FSGSQQQPNCRTVVGALEEAFQKFIGQPVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120

Query: 121 GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180
           GEVLPPHEP VV +AVNHFLQK++GDVTVVDVRSVPND+HARYKAQERTYFYRLVSGPE 
Sbjct: 121 GEVLPPHEPGVVHKAVNHFLQKHEGDVTVVDVRSVPNDFHARYKAQERTYFYRLVSGPEA 180

Query: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHFVCNKARAWSGDE 240
           LSSF+KDR WHVPE LNIGAMQEACKVLVGHHDFSSFRAAGCQ                 
Sbjct: 181 LSSFEKDRAWHVPETLNIGAMQEACKVLVGHHDFSSFRAAGCQ----------------- 240

Query: 241 TVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRR 300
               ANSP+RTLDEL+VCEV STPYFP+SMERKQRQGKEE EN   HSE+ EVGFGIRRR
Sbjct: 241 ----ANSPIRTLDELNVCEVASTPYFPTSMERKQRQGKEESENEEPHSETCEVGFGIRRR 300

Query: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIYNRTWPFEVERILEA 360
           HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD                 ERILEA
Sbjct: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD-----------------ERILEA 350

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPP 389
           KNVSSA PMAPACGLYLGHVKYDLPP P
Sbjct: 361 KNVSSARPMAPACGLYLGHVKYDLPPAP 350

[Close]

BLAST of CmoCh04G019610 vs. NCBI nr
Match: XP_022956590.1 (uncharacterized protein LOC111458281 [Cucurbita moschata])

HSP 1 Score: 703.4 bits (1814), Expect = 1.1e-198
Identity = 356/393 (90.59%), Postives = 356/393 (90.59%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120
           FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120

Query: 121 GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180
           GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET
Sbjct: 121 GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180

Query: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHFVCNKARAWSGDE 240
           LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQ                 
Sbjct: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQ----------------- 240

Query: 241 TVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRR 300
               ANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRR
Sbjct: 241 ----ANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRR 300

Query: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIYNRTWPFEVERILEA 360
           HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD                VERILEA
Sbjct: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD----------------VERILEA 356

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 394
           KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE
Sbjct: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 356

[Close]

BLAST of CmoCh04G019610 vs. NCBI nr
Match: KAG7032390.1 (truA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 698.7 bits (1802), Expect = 2.8e-197
Identity = 357/393 (90.84%), Postives = 357/393 (90.84%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR
Sbjct: 5   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 64

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120
           FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP
Sbjct: 65  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 124

Query: 121 GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180
           GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET
Sbjct: 125 GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 184

Query: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHFVCNKARAWSGDE 240
           LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQ    F C          
Sbjct: 185 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQ----FRC---------- 244

Query: 241 TVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRR 300
               ANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGK EGENGVLHSESYEVGFGIRRR
Sbjct: 245 -AVQANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGK-EGENGVLHSESYEVGFGIRRR 304

Query: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIYNRTWPFEVERILEA 360
           HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD                VERILEA
Sbjct: 305 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD----------------VERILEA 364

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 394
           KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE
Sbjct: 365 KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 365

[Close]

BLAST of CmoCh04G019610 vs. NCBI nr
Match: KAG6601629.1 (hypothetical protein SDJN03_06862, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 694.1 bits (1790), Expect = 6.9e-196
Identity = 354/393 (90.08%), Postives = 354/393 (90.08%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKHRLEFSSDSSPQRPLKIGKTTNEDL GDKEEAESMNRNPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120
           FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120

Query: 121 GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180
           GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET
Sbjct: 121 GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180

Query: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHFVCNKARAWSGDE 240
           LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQ                 
Sbjct: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQ----------------- 240

Query: 241 TVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRR 300
               ANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGK EGENGVLHSESYEVGFGIRRR
Sbjct: 241 ----ANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGK-EGENGVLHSESYEVGFGIRRR 300

Query: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIYNRTWPFEVERILEA 360
           HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD                VERILEA
Sbjct: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD----------------VERILEA 355

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 394
           KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE
Sbjct: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 355

[Close]

BLAST of CmoCh04G019610 vs. NCBI nr
Match: XP_023524389.1 (uncharacterized protein LOC111788293 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 689.5 bits (1778), Expect = 1.7e-194
Identity = 351/393 (89.31%), Postives = 351/393 (89.31%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKHRLEFSSDSSPQRPLKIGKTTNEDL GDKEEAESMNRNPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120
           FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120

Query: 121 GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180
           GEVLPPHEP VVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET
Sbjct: 121 GEVLPPHEPGVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180

Query: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHFVCNKARAWSGDE 240
           LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQ                 
Sbjct: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQ----------------- 240

Query: 241 TVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRR 300
               ANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEE EN VLHSESYEVGFGIRRR
Sbjct: 241 ----ANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEECENEVLHSESYEVGFGIRRR 300

Query: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIYNRTWPFEVERILEA 360
           HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD                VERILEA
Sbjct: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGD----------------VERILEA 356

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 394
           KNVSSASPMAPACGLYLGHVKYDLPPPP APTE
Sbjct: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPTAPTE 356

[Close]

BLAST of CmoCh04G019610 vs. NCBI nr
Match: XP_022998153.1 (uncharacterized protein LOC111492882 [Cucurbita maxima])

HSP 1 Score: 688.7 bits (1776), Expect = 2.9e-194
Identity = 349/393 (88.80%), Postives = 351/393 (89.31%), Query Frame = 0


Query: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQRYLVAVEYIGTR 60
           MTENQKHRLEFSSDSSPQRPLKIGKTTNEDL GDKEEAESMNRNPGIQRYLVAVEYIGTR
Sbjct: 1   MTENQKHRLEFSSDSSPQRPLKIGKTTNEDLPGDKEEAESMNRNPGIQRYLVAVEYIGTR 60

Query: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120
           FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP
Sbjct: 61  FSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHVDVERISKRKP 120

Query: 121 GEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180
           GEVLPPHEP VVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET
Sbjct: 121 GEVLPPHEPGVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFYRLVSGPET 180

Query: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHFVCNKARAWSGDE 240
           LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQ                 
Sbjct: 181 LSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQ----------------- 240

Query: 241 TVYGANSPMRTLDELDVCEVVSTPYFPSSMERKQRQGKEEGENGVLHSESYEVGFGIRRR 300
               ANSPMRTLDELDVCEV+STPYFPSSMERKQRQGKEEGEN VLHSESYEVGFGIRRR
Sbjct: 241 ----ANSPMRTLDELDVCEVISTPYFPSSMERKQRQGKEEGENEVLHSESYEVGFGIRRR 300

Query: 301 HRCFVVTARARSFLYHQVRLMVGVLKAVGTGDLTVGDGRWLDCNIYNRTWPFEVERILEA 360
           HRCFVVTARARSFLYHQVRLMVGVLK VGTGDLTVGD                VERILEA
Sbjct: 301 HRCFVVTARARSFLYHQVRLMVGVLKVVGTGDLTVGD----------------VERILEA 356

Query: 361 KNVSSASPMAPACGLYLGHVKYDLPPPPPAPTE 394
           KNVSSASPMAPACGLYLGHVKYDLPPP PAP+E
Sbjct: 361 KNVSSASPMAPACGLYLGHVKYDLPPPLPAPSE 356

[Close]

BLAST of CmoCh04G019610 vs. TAIR 10
Match: AT1G09800.1 (Pseudouridine synthase family protein )

HSP 1 Score: 438.3 bits (1126), Expect = 6.3e-123
Identity = 242/412 (58.74%), Postives = 278/412 (67.48%), Query Frame = 0


Query: 1   MTENQKHRLE-FSSDSSPQRPLKIGKTTNEDLLGDKE--------EAESMNR-NPGIQRY 60
           M++N KH L+  +S+ S +R  K+ +        D+E        + ESMN  NP +QRY
Sbjct: 1   MSDNLKHPLDCTASEESLERLSKVARIEG---FSDEESEEQQGLADLESMNPVNPRVQRY 60

Query: 61  LVAVEYIGTRFSGSQQQPNCRTVVGVLEEAFRKFIGQSVSVFCSSRTDAGVHALSNVCHV 120
           LVA+EYIGTRFSGSQQQ   RTVVGVL+EAF KFIGQ V +FCSSRTDAGVHALSNVCHV
Sbjct: 61  LVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVCHV 120

Query: 121 DVERISKRKPGEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTY 180
           DVERISKRKPGEVLPPHEP VV+RAVNHFLQ+ DGDV V+DVR VP++YHARYKAQERTY
Sbjct: 121 DVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERTY 180

Query: 181 FYRLVSGPETLSSFDKDRVWHVPEILNIGAMQEACKVLVGHHDFSSFRAAGCQLIIHFVC 240
           FYRL+SG + LS  +KDR WHVPE LN+  MQEAC+VLVG HDFSSFRAAGCQ       
Sbjct: 181 FYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQ------- 240

Query: 241 NKARAWSGDETVYGANSPMRTLDELDVCEVVSTPYFPSSMERK------------QRQGK 300
                         A SPMR+LDEL++ EV STPYFPS  ER               Q K
Sbjct: 241 --------------AKSPMRSLDELNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPK 300

Query: 301 EEGEN-----GVLHSESYEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLKAVGTGDL 360
            E        G +   +    FG RRRHRC+VVTAR+R FLYHQVRL+VG LK VGTG+L
Sbjct: 301 SETAGVTTNVGEVEGSTEGDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGEL 360

Query: 361 TVGDGRWLDCNIYNRTWPFEVERILEAKNVSSASPMAPACGLYLGHVKYDLP 386
           TV D                VERILEAK VS+A PMAPA GLYL  V+Y+ P
Sbjct: 361 TVSD----------------VERILEAKTVSAAKPMAPASGLYLARVRYEFP 372

[Close]

BLAST of CmoCh04G019610 vs. TAIR 10
Match: AT5G35400.1 (Pseudouridine synthase family protein )

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-07
Identity = 44/174 (25.29%), Postives = 72/174 (41.38%), Query Frame = 0


Query: 17  PQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQR-----YLVAVEYIGTRFSGSQQQPNCR 76
           P++ L       E++L + E   S  ++    R     + + + Y G  F G Q+QP+  
Sbjct: 57  PKKSLVHDDGITEEMLLESEPETSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLH 116

Query: 77  TVVGVLEEAFRKFIGQSVS-------------VFCSSRTDAGVHALSNVCHVDVERISKR 136
           TV GV+E++   F+ +  +             V  + RTD GV AL+ VC     R    
Sbjct: 117 TVQGVVEKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWR---- 176

Query: 137 KPGEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFY 173
                    EP  +  A+N   +   G + VV +  V   +H  + A+ R Y Y
Sbjct: 177 ------KDIEPIAIEDAIN---KDASGKLRVVSISKVSRSFHPNFSAKWRRYLY 217

[Close]

BLAST of CmoCh04G019610 vs. TAIR 10
Match: AT5G35400.2 (Pseudouridine synthase family protein )

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-07
Identity = 44/174 (25.29%), Postives = 72/174 (41.38%), Query Frame = 0


Query: 17  PQRPLKIGKTTNEDLLGDKEEAESMNRNPGIQR-----YLVAVEYIGTRFSGSQQQPNCR 76
           P++ L       E++L + E   S  ++    R     + + + Y G  F G Q+QP+  
Sbjct: 57  PKKSLVHDDGITEEMLLESEPETSTRKDGRSGRWERVNFKIVLSYNGASFDGWQKQPDLH 116

Query: 77  TVVGVLEEAFRKFIGQSVS-------------VFCSSRTDAGVHALSNVCHVDVERISKR 136
           TV GV+E++   F+ +  +             V  + RTD GV AL+ VC     R    
Sbjct: 117 TVQGVVEKSLGGFVDERKAQLLKKKCKPLEGRVLVAGRTDKGVSALNQVCSFYTWR---- 176

Query: 137 KPGEVLPPHEPSVVRRAVNHFLQKNDGDVTVVDVRSVPNDYHARYKAQERTYFY 173
                    EP  +  A+N   +   G + VV +  V   +H  + A+ R Y Y
Sbjct: 177 ------KDIEPIAIEDAIN---KDASGKLRVVSISKVSRSFHPNFSAKWRRYLY 217

The following BLAST results are available for this feature:

BLAST of CmoCh04G019610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2WAT0	8.5e-40	34.59	tRNA pseudouridine synthase A OS=Magnetospirillum magneticum (strain AMB-1 / ATC...	[more]
A7IKI9	1.1e-39	34.73	tRNA pseudouridine synthase A OS=Xanthobacter autotrophicus (strain ATCC BAA-115...	[more]
B6IPI0	5.5e-39	35.12	tRNA pseudouridine synthase A OS=Rhodospirillum centenum (strain ATCC 51521 / SW...	[more]
A7HPQ3	1.6e-38	32.84	tRNA pseudouridine synthase A OS=Parvibaculum lavamentivorans (strain DS-1 / DSM...	[more]
A9ILJ7	3.6e-38	31.36	tRNA pseudouridine synthase A OS=Bartonella tribocorum (strain CIP 105476 / IBS ...	[more]

BLAST of CmoCh04G019610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GY72	5.5e-199	90.59	tRNA pseudouridine synthase OS=Cucurbita moschata OX=3662 GN=LOC111458281 PE=3 S...	[more]
A0A6J1KFZ8	1.4e-194	88.80	tRNA pseudouridine synthase OS=Cucurbita maxima OX=3661 GN=LOC111492882 PE=3 SV=...	[more]
A0A5D3CZZ6	6.7e-173	80.67	tRNA pseudouridine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BDG9	6.7e-173	80.67	tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488841 PE=3 SV=1	[more]
A0A1S3BDY4	2.6e-172	80.41	tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103488841 PE=3 SV=1	[more]

BLAST of CmoCh04G019610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956590.1	1.1e-198	90.59	uncharacterized protein LOC111458281 [Cucurbita moschata]	[more]
KAG7032390.1	2.8e-197	90.84	truA, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6601629.1	6.9e-196	90.08	hypothetical protein SDJN03_06862, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023524389.1	1.7e-194	89.31	uncharacterized protein LOC111788293 [Cucurbita pepo subsp. pepo]	[more]
XP_022998153.1	2.9e-194	88.80	uncharacterized protein LOC111492882 [Cucurbita maxima]	[more]

BLAST of CmoCh04G019610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09800.1	6.3e-123	58.74	Pseudouridine synthase family protein	[more]
AT5G35400.1	2.0e-07	25.29	Pseudouridine synthase family protein	[more]
AT5G35400.2	2.0e-07	25.29	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020097	Pseudouridine synthase I, TruA, alpha/beta domain	PFAM	PF01416	PseudoU_synth_1	coord: 204..383 e-value: 1.4E-19 score: 70.5 coord: 53..163 e-value: 2.3E-8 score: 34.5
IPR020094	Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal	GENE3D	3.30.70.580		coord: 45..165 e-value: 6.8E-28 score: 99.1
IPR020095	Pseudouridine synthase I, TruA, C-terminal	GENE3D	3.30.70.660		coord: 167..384 e-value: 1.3E-32 score: 114.4
None	No IPR available	PIRSR	PIRSR001430-2	PIRSR001430-2	coord: 87..222 e-value: 4.4E-31 score: 106.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	PANTHER	PTHR11142:SF0	TRNA PSEUDOURIDINE SYNTHASE-LIKE 1	coord: 27..383
IPR001406	Pseudouridine synthase I, TruA	PANTHER	PTHR11142	PSEUDOURIDYLATE SYNTHASE	coord: 27..383
IPR001406	Pseudouridine synthase I, TruA	HAMAP	MF_00171	TruA	coord: 48..382 score: 27.71154
IPR001406	Pseudouridine synthase I, TruA	CDD	cd02570	PseudoU_synth_EcTruA	coord: 54..382 e-value: 4.41779E-96 score: 285.136
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 47..383

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G019610.1	CmoCh04G019610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031119	tRNA pseudouridine synthesis
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0106029	tRNA pseudouridine synthase activity
molecular_function	GO:0009982	pseudouridine synthase activity