CmoCh04G018030 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G018030
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionserine/arginine-rich splicing factor RSZ21-like
LocationCmo_Chr04: 9084004 .. 9088204 (+)
RNA-Seq ExpressionCmoCh04G018030
SyntenyCmoCh04G018030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCGAGCATCGGAGCTCCGCGACTACGGGCAGCACCGTTTTCCTATCTTATCGCCGGCTGATCTGTTCGTACTTTTTGACGATTCCGAGAGATCTTTTTCTTGGTAGGCTTCAGCTTCGCGATCAATACGTGCATAACCCTAATTCTTCCTCATTTTTTGTTTTTTAATCCTTAAACTAGCGGTTCGATTTTGTTTTTCTCCCTCCATTTTTGATGATCTACTGCAAATGCTTCGTTTGTGAACTTTCTGTGTGTGTATTTTTACCCCATGTAGACTTATATAGGTGTTGCAGCTTTCGCATCCTGGGGTTGTGAGGGTTGTTTTTCCATTCCAGTTTGTTGTTTAGATTACATTCTAACTCCTGTTCTGTACGTATTTTCTTGTTTATTTAGGAATGATTCGTTTTCTCAAACTAACATAGTTTCTCGGGATTGCTTACTCTTACTATTTTCAGGAGCTTCTGGGCTCCTTCGATACAATGACTCGAGTTTACATTGGTAATCTGGATCCACGTGTTACGGAGAGGGAGCTTGAAGATGAATTTCGAATGTTCGGTGTTCTGAGGAGGTGATTTGAGTTTGAAATTTTTGTATCGAGGCATTCTTTTCATGTATTTCTTAAATTAACATATTTTAGACGCATGATATGATATCTACCGAATGGTCCGAAATGTGGAATTTTAAGCTCCTGGGTTCTTTCAGTGGCAGTGTGTTGGGTTCTTTCATTATATGCCCTAGATTTTTTACAGCACATAAATATCTATCCATCCCGTTATACCTAGCCGAAGCTAGATATTTCAGCACTCTGCAGGGGAAGAAAAAAGAAACAGAACATAAAAAACCCTTACTTAGCAATGAGTGCTCGTTAGTTGGACTCTGCTTTATGCATAAGTCCATATCTTCCTTATCGTTAACTTTTTGTTTAAGAACTGAACCCAATGCACAGACTCTCTTAGATATGTCGTCTGACGTTTTCTGATGTCTATCCTTGAGATTAGTTGGCTCAATGTGCATGGCTCATATCTCAGACTCGTTTGTACCTCGACCAAAAGCCAGAGTAGTATTTCTGTGGTCTAGATTTTGCTTCAAGGACGTTTATGTCTCAATTGCATATCAGTTATTAAGATGAGATCGCTTACACCATGCATCCTCCATTTGCAATAATTTGAAACAATATATCTGTTTCTTTGTTCCTTTGTATTAAAATGCATTCTGAATATTTGTCTTTGAACAAAACAATACAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAAGCATTGGATGGTCAGTTTTAAATAAAAGATCTTTTTTTTTTGTCTTGTAGGTATCAAATTTTGCATTGCATTACATTCCTTCTATAAAATGTTATTTTCTTTTGTTTATGTGTGTGCACATGCTTTTCTCGACCACTAGTGAGTTTGACGTGTGCGGGAGCACTTTCCTTGGCTTTATCTGTAATCTAGTTTTCATTACTGCAGTAAATCAGAAATTTATTATTGATCTAGCTTGATATCATCTTTGGTCTGCTAAATTGAACTAAATCGTGGAAATTTACCTTATTCTTTAAGACCACCTTATTGAAAAAGAGGGTAATGAATGGCCCAATCCTCTTCAATATGCTTCAAATATGTGATTTTGGGAATTATCATGATTCTAAGATATAGAAACTTGAGGGCTATGGAAGCCATTTTTATCAACCATGTTCTTATGCCCTCTTTGATGTTGATTCTATCTTGAACCAGCATCTAATCTCTTTGGTTTGGAAGGCTAAAGTGACTAAGAAGACTTCCTTGATCCTAGCCTCTTTTATTAGACTTTCAGCTCCCTTTTTTCAATTATTTTTTTCATAAATTGTTCGCTGTTTTTGGCATCTCTTGGTGCTTCCCCAAGTGTCACGAGTTGGTAGTCTAGTCTTTCAACTCCGTTGTGATCATCCTTTCATAGTTAAAGTAAAGAGCTGTGGAATAATTCAAATATTGCCATGTAATGGATAATTGGTTTGAGAGAAGTCAAATGAATTTTCATGATGCTTTCTCTATGGTGGAGGTCTTGTTGGACCTTGTGAACTTCTTTCCTATATGGTGCACTAGATCAATATTTTTGCTTTTCAATTAAAGTCTATCCTTAATCCGGGATCCTTTTCTATGACTTCCTAGGGCTAATAGGTTGATTCCTTATCCCCCTATTCTTAGTTTTATTGCCTTGAGTTAAGTTTATCTTATCTTTTATGTGTGATTTTATTGGGTTCTTTTCGTAGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCGGTGGAGGAGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGTGAGTGTCGTTCACGTGGGGGCTCACGAGGTGCAGGAGGTGGTTTGCGCCGTAGTCCTTCTCCTCGGCGCCGTAGGAGTCCAAGCTATGAAAGATATGGTCGCAGGTGTGTCAAAGCTGCGTGTGTGTTTTTTTTTTTTCAAAGCACACCAAGTTATCAATTCAACAGGTGGTTTGGTTTCATATAAACTGAAGAATTTGATGTTCTATCACTCTTTTCCTTTTTCTTGTGTAGGAGTAACAGTCCTCGTGGTAAAAGATCCCCACCAAGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGGAGCTACAGCAGATCCCCTCCACCCCGCCATGCTCGTCGTGCTTCACCTTATGCTAATGGGTATGCCTTCTTAGTCATGAGAACTGTTCACTACATCTATTAGTTAGTGAAAGGCGAGGGAACTTAATTGCCTTACATAGGTTGTTTTGTGCACATGGGGTTTGGGGAATCATTGTAGTGCAGTAGAACAAGGTTATCTTGAACAGCAAGATTCCAGGCGTCGCTAGTATTCTCTCCCATAACTAACTAGGAATTTCTTAATTGTTTCACCCTCCTGGCGTATGTTTGCTTTAAATGATTTTCTACTACAAATTCTTGTCAATACATACTTGACTGAGATACATATTCCATAACTTATACTTTTAGATACAAGTACATCGATCTGATAGTTGCATGTTAATCATTATTGCAGAGATTGATGTTGGACTCAAGGCTGGATGCTGTGCTGGTAGAACTTAGATGATGGTGTTTCTGCTATGCTGTAGTTCTAATAGGAATTGTGGAGTGAACCAGAATCATGTAGTTAAGTTCGTCTCTGACAATTGGTTCTCTTTGAAACCTGGATTTGGATGGGTGTCTACGAAGTGTTTTGAGCCACGAAATGGGGTTCGGTCGGGCACCATTTTGTGTTGGCTCCCTTCTGCCCGCTGAAACTTGGAGGTCTCTTTCTTGCTTTTAAAATTATATCTACTACCTAGAGTTTTTTATATATATATATATCTATACCTTTCTATCTACTCATCAATATTTCTTTTCCATTGGATGCCCCTAAAGATCTATCTGTTGGCTGTTTTTTCCTCTTATGTTTTTGAGGTGTGATTTTCGGCTATATATGGCATCGTTACTCAGCTAACTGCATCTTAGTGCATCACGGTTCTCAATATCTGCTCTGCTCCTCAATCATCTTCTTGTTACTACAACTGGTTGCATGCTGTTTGTATTGCACTCAAGGCTGCCCATATAGTGTTAATCCTTTTTAGGTGGTTGAAGAAGATGAAGCTGTTTTTATGCGATTTTTCTGCTCATCATCTTCTCGTCTATCAACGCTTTTCGAGCTTCTTCTATTACATCTGCAAAACTATTGTGAGAGTTTTATAACATCGGCATCTTGTGAGCTTCAACTTGTTTATTGCTCTCCCCAACTACTGCCTCGCCTTGCTCCACCAACCTTCCCTCTTTCACCATTATGCTTCCTTCAATAGCACTTCCCCTTAAGTGAGGCAGCTACTTTCTTGGTCATGGCTCATTAGTTTGTGTGTATTAGCTAGCTAGCTAGGGTCAAGGATGTTGGAAATTTGAATGCTTATTTATATTCCCACTCTTTGATGTTTGTTGTTTGTTCTTTGCATAGGGAAATACATTTAAAGCCCTCCCAATTTCAATTAAGGAACCTTCATTAATCGATTTTATTGTGAGGATGTTTATCTTCGATTCTCACAAATAATATTC

mRNA sequence

TTCCGAGCATCGGAGCTCCGCGACTACGGGCAGCACCGTTTTCCTATCTTATCGCCGGCTGATCTGTTCGAGCTTCTGGGCTCCTTCGATACAATGACTCGAGTTTACATTGGTAATCTGGATCCACGTGTTACGGAGAGGGAGCTTGAAGATGAATTTCGAATGTTCGGTGTTCTGAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAAGCATTGGATGACCACCTTATTGAAAAAGAGGTTAAAGTAAAGAGCTGTGGAATAATTCAAATATTGCCATGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCGGTGGAGGAGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGTGAGTGTCGTTCACGTGGGGGCTCACGAGGTGCAGGAGGTGGTTTGCGCCGTAGTCCTTCTCCTCGGCGCCGTAGGAGTCCAAGCTATGAAAGATATGGTCGCAGGTGTGTCAAAGCTGCGTGAGTAACAGTCCTCGTGGTAAAAGATCCCCACCAAGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGGAGCTACAGCAGATCCCCTCCACCCCGCCATGCTCGTCGTGCTTCACCTTATGCTAATGGAGATTGATGTTGGACTCAAGGCTGGATGCTGTGCTGGTAGAACTTAGATGATGGTGTTTCTGCTATGCTGTAGTTCTAATAGGAATTGTGGAGTGAACCAGAATCATGTAGTTAAGTTCGTCTCTGACAATTGGTTCTCTTTGAAACCTGGATTTGGATGGGTGTCTACGAAGTGTTTTGAGCCACGAAATGGGGTTCGGTCGGGCACCATTTTGTGTTGGCTCCCTTCTGCCCGCTGAAACTTGGAGGTCTCTTTCTTGCTTTTAAAATTATATCTACTACCTAGAGTTTTTTATATATATATATATCTATACCTTTCTATCTACTCATCAATATTTCTTTTCCATTGGATGCCCCTAAAGATCTATCTGTTGGCTGTTTTTTCCTCTTATGTTTTTGAGGTGTGATTTTCGGCTATATATGGCATCGTTACTCAGCTAACTGCATCTTAGTGCATCACGGTTCTCAATATCTGCTCTGCTCCTCAATCATCTTCTTGTTACTACAACTGGTTGCATGCTGTTTGTATTGCACTCAAGGCTGCCCATATAGTGTTAATCCTTTTTAGGTGGTTGAAGAAGATGAAGCTGTTTTTATGCGATTTTTCTGCTCATCATCTTCTCGTCTATCAACGCTTTTCGAGCTTCTTCTATTACATCTGCAAAACTATTGTGAGAGTTTTATAACATCGGCATCTTGTGAGCTTCAACTTGTTTATTGCTCTCCCCAACTACTGCCTCGCCTTGCTCCACCAACCTTCCCTCTTTCACCATTATGCTTCCTTCAATAGCACTTCCCCTTAAGTGAGGCAGCTACTTTCTTGGTCATGGCTCATTAGTTTGTGTGTATTAGCTAGCTAGCTAGGGTCAAGGATGTTGGAAATTTGAATGCTTATTTATATTCCCACTCTTTGATGTTTGTTGTTTGTTCTTTGCATAGGGAAATACATTTAAAGCCCTCCCAATTTCAATTAAGGAACCTTCATTAATCGATTTTATTGTGAGGATGTTTATCTTCGATTCTCACAAATAATATTC

Coding sequence (CDS)

TTCCGAGCATCGGAGCTCCGCGACTACGGGCAGCACCGTTTTCCTATCTTATCGCCGGCTGATCTGTTCGAGCTTCTGGGCTCCTTCGATACAATGACTCGAGTTTACATTGGTAATCTGGATCCACGTGTTACGGAGAGGGAGCTTGAAGATGAATTTCGAATGTTCGGTGTTCTGAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAAGCATTGGATGACCACCTTATTGAAAAAGAGGTTAAAGTAAAGAGCTGTGGAATAATTCAAATATTGCCATGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCGGTGGAGGAGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGTGAGTGTCGTTCACGTGGGGGCTCACGAGGTGCAGGAGGTGGTTTGCGCCGTAGTCCTTCTCCTCGGCGCCGTAGGAGTCCAAGCTATGAAAGATATGGTCGCAGGTGTGTCAAAGCTGCGTGA

Protein sequence

FRASELRDYGQHRFPILSPADLFELLGSFDTMTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDDHLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGGGGGGGRRGRGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRRCVKAA
Homology
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BLAST of CmoCh04G018030 vs. ExPASy Swiss-Prot
Match: O81127 (Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana OX=3702 GN=RSZ21 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 6.2e-47
Identity = 109/165 (66.06%), Postives = 115/165 (69.70%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVY+GNLDPRVTERELEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGG-GGGGGRRGRGGGGGGGDDLKCYEC 151
                               KNGWRVELSH  KGG GGGGGRR      GG +D KCYEC
Sbjct: 61  --------------------KNGWRVELSHKDKGGRGGGGGRR------GGIEDSKCYEC 120

Query: 152 GEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRRCV 196
           GE GHFARECR     RG G   RRSPSPRRRRSP Y  Y RR +
Sbjct: 121 GELGHFARECR-----RGRGSVRRRSPSPRRRRSPDY-GYARRSI 133

[Close]
BLAST of CmoCh04G018030 vs. ExPASy Swiss-Prot
Match: O81126 (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.9e-44
Identity = 103/163 (63.19%), Postives = 113/163 (69.33%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           M+RVY+GNLDPRVTERELEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALD 
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHN--SKGGGGGGGRRGRGG---GGGGGDDLK 151
                               KNGWRVE SHN   +GGGG GG RG GG   GG GG DLK
Sbjct: 61  --------------------KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLK 120

Query: 152 CYECGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYER 190
           CYECGE GHFARECR+RGG+       R    PR RRSPSY R
Sbjct: 121 CYECGETGHFARECRNRGGTGRRRSKSRSRTPPRYRRSPSYGR 143

[Close]
BLAST of CmoCh04G018030 vs. ExPASy Swiss-Prot
Match: Q9SJA6 (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-43
Identity = 105/165 (63.64%), Postives = 115/165 (69.70%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           M+RVY+GNLDPRVTERELEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ +D 
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGGGGGGGRRGRGGG--GGGGDDLKCYE 151
                               KNGWRVE SHN  GGGG GG RG G G  G GG DLKCYE
Sbjct: 61  --------------------KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYE 120

Query: 152 CGEPGHFARECRSRGGSRGAGGGLRRSPS-PRRRRSPSYERYGRR 194
           CGE GHFARECRSRGGS G      RS S PR R+SP+Y   GRR
Sbjct: 121 CGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSPTYG--GRR 143

[Close]
BLAST of CmoCh04G018030 vs. ExPASy Swiss-Prot
Match: Q69KL9 (Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=39947 GN=RSZ21A PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.9e-41
Identity = 99/170 (58.24%), Postives = 108/170 (63.53%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           M RVY+GNLDPRVT RELEDEFR+FGVLRSVWVAR+PPG+AFI+FDDRRDA DAI+ +D 
Sbjct: 1   MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGGGGGGGRRGRGGGGGGGDDLKCYECG 151
                               KNGWRVELS N+  G GG  R        G  + KCYECG
Sbjct: 61  --------------------KNGWRVELSRNASSGRGGRDRY-------GSSESKCYECG 120

Query: 152 EPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYER---YGRRCVKAA 199
           E GHFARECR R GS G G G RRS S  R RSP Y R   YGRR    A
Sbjct: 121 ETGHFARECRLRIGSGGLGSGRRRSRSRSRSRSPRYRRSPSYGRRSYSPA 143

[Close]
BLAST of CmoCh04G018030 vs. ExPASy Swiss-Prot
Match: Q6K9C3 (Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp. japonica OX=39947 GN=RSZ23 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-39
Identity = 101/176 (57.39%), Postives = 110/176 (62.50%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           M RVY+GNLDPRVT RE+EDEFR+FGVLRSVWVAR+PPG+AFI+FDDRRDA DAI+ LD 
Sbjct: 1   MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGGGGGGGRRGRGGGGGGGDDLKCYECG 151
                               KNGWRVELS  +K G       GRG    GG D+KCYECG
Sbjct: 61  --------------------KNGWRVELS--TKAGS------GRGRDRSGGSDMKCYECG 120

Query: 152 EPGHFARECRSRGGSRGAGGGLR---------------RSPSPRRRRSPSYERYGR 193
           EPGHFARECR R GS G G G R               RS SPR RRSPSY R  R
Sbjct: 121 EPGHFARECRLRIGSGGLGSGRRRSRSRSRSPRYRGRSRSRSPRYRRSPSYGRSPR 148

[Close]
BLAST of CmoCh04G018030 vs. ExPASy TrEMBL
Match: A0A6J1GX57 (serine/arginine-rich splicing factor RSZ21-like OS=Cucurbita moschata OX=3662 GN=LOC111458322 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 7.8e-69
Identity = 141/162 (87.04%), Postives = 141/162 (87.04%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALD 
Sbjct: 1   MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGGGGGGGRRGRGGGGGGGDDLKCYECG 151
                               KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGDDLKCYECG
Sbjct: 61  --------------------KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGDDLKCYECG 120

Query: 152 EPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 194
           EPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR
Sbjct: 121 EPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 142

[Close]
BLAST of CmoCh04G018030 vs. ExPASy TrEMBL
Match: A0A6J1KZV2 (serine/arginine-rich splicing factor RSZ21-like OS=Cucurbita maxima OX=3661 GN=LOC111497790 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.5e-67
Identity = 141/164 (85.98%), Postives = 141/164 (85.98%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALD 
Sbjct: 1   MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGGGGGGGRRGR--GGGGGGGDDLKCYE 151
                               KNGWRVELSHNSKGGGGGGGRRGR  GGGGGGGDDLKCYE
Sbjct: 61  --------------------KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYE 120

Query: 152 CGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 194
           CGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR
Sbjct: 121 CGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 144

[Close]
BLAST of CmoCh04G018030 vs. ExPASy TrEMBL
Match: A0A1S3BEJ4 (serine/arginine-rich splicing factor RSZ21 OS=Cucumis melo OX=3656 GN=LOC103489020 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.6e-66
Identity = 139/164 (84.76%), Postives = 140/164 (85.37%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALD 
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGGGGGGGRRGR--GGGGGGGDDLKCYE 151
                               KNGWRVELSHNSKGGGGGGGRRGR  GGGGGGGDDLKCYE
Sbjct: 61  --------------------KNGWRVELSHNSKGGGGGGGRRGRGAGGGGGGGDDLKCYE 120

Query: 152 CGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 194
           CGEPGHFARECRSRGGSRG GGGLRRSPSPRRRRSPSYERYGRR
Sbjct: 121 CGEPGHFARECRSRGGSRGVGGGLRRSPSPRRRRSPSYERYGRR 144

[Close]
BLAST of CmoCh04G018030 vs. ExPASy TrEMBL
Match: A0A5D3CUM7 (Serine/arginine-rich splicing factor RSZ21 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00890 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.6e-66
Identity = 139/164 (84.76%), Postives = 140/164 (85.37%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALD 
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGGGGGGGRRGR--GGGGGGGDDLKCYE 151
                               KNGWRVELSHNSKGGGGGGGRRGR  GGGGGGGDDLKCYE
Sbjct: 61  --------------------KNGWRVELSHNSKGGGGGGGRRGRGAGGGGGGGDDLKCYE 120

Query: 152 CGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 194
           CGEPGHFARECRSRGGSRG GGGLRRSPSPRRRRSPSYERYGRR
Sbjct: 121 CGEPGHFARECRSRGGSRGVGGGLRRSPSPRRRRSPSYERYGRR 144

[Close]
BLAST of CmoCh04G018030 vs. ExPASy TrEMBL
Match: A0A6J1G1N9 (serine/arginine-rich splicing factor RSZ21-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449845 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 7.6e-64
Identity = 137/164 (83.54%), Postives = 139/164 (84.76%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVYIGNLDPRV+ER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALD 
Sbjct: 1   MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGGGGGGGRR-GR-GGGGGGGDDLKCYE 151
                               KNGWRVELSHNSKGGGGGGG R GR GGGGGGGDDLKCYE
Sbjct: 61  --------------------KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYE 120

Query: 152 CGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 194
           CGEPGHFARECRSRGGSRG GGGLRRSPSPRRRRSPSYERYGRR
Sbjct: 121 CGEPGHFARECRSRGGSRGIGGGLRRSPSPRRRRSPSYERYGRR 144

[Close]
BLAST of CmoCh04G018030 vs. NCBI nr
Match: XP_022956661.1 (serine/arginine-rich splicing factor RSZ21-like [Cucurbita moschata] >XP_023526643.1 serine/arginine-rich splicing factor RSZ21-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.0 bits (689), Expect = 1.6e-68
Identity = 141/162 (87.04%), Postives = 141/162 (87.04%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALD 
Sbjct: 1   MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGGGGGGGRRGRGGGGGGGDDLKCYECG 151
                               KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGDDLKCYECG
Sbjct: 61  --------------------KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGDDLKCYECG 120

Query: 152 EPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 194
           EPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR
Sbjct: 121 EPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 142

[Close]
BLAST of CmoCh04G018030 vs. NCBI nr
Match: XP_023004543.1 (serine/arginine-rich splicing factor RSZ21-like [Cucurbita maxima])

HSP 1 Score: 265.0 bits (676), Expect = 5.2e-67
Identity = 141/164 (85.98%), Postives = 141/164 (85.98%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALD 
Sbjct: 1   MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGGGGGGGRRGR--GGGGGGGDDLKCYE 151
                               KNGWRVELSHNSKGGGGGGGRRGR  GGGGGGGDDLKCYE
Sbjct: 61  --------------------KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYE 120

Query: 152 CGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 194
           CGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR
Sbjct: 121 CGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 144

[Close]
BLAST of CmoCh04G018030 vs. NCBI nr
Match: XP_008446226.1 (PREDICTED: serine/arginine-rich splicing factor RSZ21 [Cucumis melo] >XP_008446227.1 PREDICTED: serine/arginine-rich splicing factor RSZ21 [Cucumis melo])

HSP 1 Score: 262.3 bits (669), Expect = 3.4e-66
Identity = 139/164 (84.76%), Postives = 140/164 (85.37%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALD 
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGGGGGGGRRGR--GGGGGGGDDLKCYE 151
                               KNGWRVELSHNSKGGGGGGGRRGR  GGGGGGGDDLKCYE
Sbjct: 61  --------------------KNGWRVELSHNSKGGGGGGGRRGRGAGGGGGGGDDLKCYE 120

Query: 152 CGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 194
           CGEPGHFARECRSRGGSRG GGGLRRSPSPRRRRSPSYERYGRR
Sbjct: 121 CGEPGHFARECRSRGGSRGVGGGLRRSPSPRRRRSPSYERYGRR 144

[Close]
BLAST of CmoCh04G018030 vs. NCBI nr
Match: TYK15593.1 (serine/arginine-rich splicing factor RSZ21 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 262.3 bits (669), Expect = 3.4e-66
Identity = 139/164 (84.76%), Postives = 140/164 (85.37%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALD 
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGGGGGGGRRGR--GGGGGGGDDLKCYE 151
                               KNGWRVELSHNSKGGGGGGGRRGR  GGGGGGGDDLKCYE
Sbjct: 61  --------------------KNGWRVELSHNSKGGGGGGGRRGRGAGGGGGGGDDLKCYE 120

Query: 152 CGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 194
           CGEPGHFARECRSRGGSRG GGGLRRSPSPRRRRSPSYERYGRR
Sbjct: 121 CGEPGHFARECRSRGGSRGVGGGLRRSPSPRRRRSPSYERYGRR 144

[Close]
BLAST of CmoCh04G018030 vs. NCBI nr
Match: XP_011655636.1 (serine/arginine-rich splicing factor RSZ21 [Cucumis sativus] >KAE8648723.1 hypothetical protein Csa_008378 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 4.4e-66
Identity = 139/165 (84.24%), Postives = 140/165 (84.85%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALD 
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGGGGGGGRRGR---GGGGGGGDDLKCY 151
                               KNGWRVELSHNSKGGGGGGGRRGR   GGGGGGGDDLKCY
Sbjct: 61  --------------------KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGGDDLKCY 120

Query: 152 ECGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 194
           ECGEPGHFARECRSRGGSRG GGGLRRSPSPRRRRSPSYERYGRR
Sbjct: 121 ECGEPGHFARECRSRGGSRGVGGGLRRSPSPRRRRSPSYERYGRR 145

[Close]
BLAST of CmoCh04G018030 vs. TAIR 10
Match: AT1G23860.1 (RS-containing zinc finger protein 21 )

HSP 1 Score: 188.7 bits (478), Expect = 4.4e-48
Identity = 109/165 (66.06%), Postives = 115/165 (69.70%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVY+GNLDPRVTERELEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGG-GGGGGRRGRGGGGGGGDDLKCYEC 151
                               KNGWRVELSH  KGG GGGGGRR      GG +D KCYEC
Sbjct: 61  --------------------KNGWRVELSHKDKGGRGGGGGRR------GGIEDSKCYEC 120

Query: 152 GEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRRCV 196
           GE GHFARECR     RG G   RRSPSPRRRRSP Y  Y RR +
Sbjct: 121 GELGHFARECR-----RGRGSVRRRSPSPRRRRSPDY-GYARRSI 133

[Close]
BLAST of CmoCh04G018030 vs. TAIR 10
Match: AT1G23860.2 (RS-containing zinc finger protein 21 )

HSP 1 Score: 188.7 bits (478), Expect = 4.4e-48
Identity = 109/165 (66.06%), Postives = 115/165 (69.70%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVY+GNLDPRVTERELEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGG-GGGGGRRGRGGGGGGGDDLKCYEC 151
                               KNGWRVELSH  KGG GGGGGRR      GG +D KCYEC
Sbjct: 61  --------------------KNGWRVELSHKDKGGRGGGGGRR------GGIEDSKCYEC 120

Query: 152 GEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRRCV 196
           GE GHFARECR     RG G   RRSPSPRRRRSP Y  Y RR +
Sbjct: 121 GELGHFARECR-----RGRGSVRRRSPSPRRRRSPDY-GYARRSI 133

[Close]
BLAST of CmoCh04G018030 vs. TAIR 10
Match: AT1G23860.4 (RS-containing zinc finger protein 21 )

HSP 1 Score: 188.0 bits (476), Expect = 7.5e-48
Identity = 106/157 (67.52%), Postives = 111/157 (70.70%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVY+GNLDPRVTERELEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGG-GGGGGRRGRGGGGGGGDDLKCYEC 151
                               KNGWRVELSH  KGG GGGGGRR      GG +D KCYEC
Sbjct: 61  --------------------KNGWRVELSHKDKGGRGGGGGRR------GGIEDSKCYEC 120

Query: 152 GEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSY 188
           GE GHFARECR     RG G   RRSPSPRRRRSP Y
Sbjct: 121 GELGHFARECR-----RGRGSVRRRSPSPRRRRSPDY 126

[Close]
BLAST of CmoCh04G018030 vs. TAIR 10
Match: AT1G23860.3 (RS-containing zinc finger protein 21 )

HSP 1 Score: 187.6 bits (475), Expect = 9.8e-48
Identity = 109/163 (66.87%), Postives = 114/163 (69.94%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           MTRVY+GNLDPRVTERELEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHNSKGG-GGGGGRRGRGGGGGGGDDLKCYEC 151
                               KNGWRVELSH  KGG GGGGGRR      GG +D KCYEC
Sbjct: 61  --------------------KNGWRVELSHKDKGGRGGGGGRR------GGIEDSKCYEC 120

Query: 152 GEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRR 194
           GE GHFARECR     RG G   RRSPSPRRRRSP Y  Y RR
Sbjct: 121 GELGHFARECR-----RGRGSVRRRSPSPRRRRSPDY-GYARR 131

[Close]
BLAST of CmoCh04G018030 vs. TAIR 10
Match: AT4G31580.1 (serine/arginine-rich 22 )

HSP 1 Score: 179.1 bits (453), Expect = 3.5e-45
Identity = 103/163 (63.19%), Postives = 113/163 (69.33%), Query Frame = 0 

Query: 32  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDD 91
           M+RVY+GNLDPRVTERELEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALD 
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 92  HLIEKEVKVKSCGIIQILPWKNGWRVELSHN--SKGGGGGGGRRGRGG---GGGGGDDLK 151
                               KNGWRVE SHN   +GGGG GG RG GG   GG GG DLK
Sbjct: 61  --------------------KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLK 120

Query: 152 CYECGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYER 190
           CYECGE GHFARECR+RGG+       R    PR RRSPSY R
Sbjct: 121 CYECGETGHFARECRNRGGTGRRRSKSRSRTPPRYRRSPSYGR 143

The following BLAST results are available for this feature:
BLAST of CmoCh04G018030 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O811276.2e-4766.06Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana OX=3702 GN=RS... [more]
O811264.9e-4463.19Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RS... [more]
Q9SJA61.1e-4363.64Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=R... [more]
Q69KL93.9e-4158.24Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=3... [more]
Q6K9C31.2e-3957.39Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp. japonica OX=39... [more]
BLAST of CmoCh04G018030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GX577.8e-6987.04serine/arginine-rich splicing factor RSZ21-like OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1KZV22.5e-6785.98serine/arginine-rich splicing factor RSZ21-like OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A1S3BEJ41.6e-6684.76serine/arginine-rich splicing factor RSZ21 OS=Cucumis melo OX=3656 GN=LOC1034890... [more]
A0A5D3CUM71.6e-6684.76Serine/arginine-rich splicing factor RSZ21 isoform X1 OS=Cucumis melo var. makuw... [more]
A0A6J1G1N97.6e-6483.54serine/arginine-rich splicing factor RSZ21-like isoform X1 OS=Cucurbita moschata... [more]
BLAST of CmoCh04G018030 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022956661.11.6e-6887.04serine/arginine-rich splicing factor RSZ21-like [Cucurbita moschata] >XP_0235266... [more]
XP_023004543.15.2e-6785.98serine/arginine-rich splicing factor RSZ21-like [Cucurbita maxima][more]
XP_008446226.13.4e-6684.76PREDICTED: serine/arginine-rich splicing factor RSZ21 [Cucumis melo] >XP_0084462... [more]
TYK15593.13.4e-6684.76serine/arginine-rich splicing factor RSZ21 isoform X1 [Cucumis melo var. makuwa][more]
XP_011655636.14.4e-6684.24serine/arginine-rich splicing factor RSZ21 [Cucumis sativus] >KAE8648723.1 hypot... [more]
BLAST of CmoCh04G018030 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G23860.14.4e-4866.06RS-containing zinc finger protein 21 [more]
AT1G23860.24.4e-4866.06RS-containing zinc finger protein 21 [more]
AT1G23860.47.5e-4867.52RS-containing zinc finger protein 21 [more]
AT1G23860.39.8e-4866.87RS-containing zinc finger protein 21 [more]
AT4G31580.13.5e-4563.19serine/arginine-rich 22 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 34..101
e-value: 4.1E-18
score: 76.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 35..95
e-value: 1.7E-15
score: 56.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 33..101
score: 15.493864
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 146..162
e-value: 1.9E-5
score: 34.1
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 146..161
e-value: 8.6E-8
score: 31.9
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 146..162
score: 11.037273
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 33..101
e-value: 3.0E-19
score: 71.0
NoneNo IPR availableGENE3D4.10.60.10coord: 141..188
e-value: 1.1E-7
score: 33.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..198
NoneNo IPR availablePANTHERPTHR23147:SF164SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1coord: 105..186
coord: 24..90
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 24..90
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 105..186
NoneNo IPR availableCDDcd12373RRM_SRSF3_likecoord: 34..122
e-value: 4.93798E-34
score: 113.869
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 29..142
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 136..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G018030.1CmoCh04G018030.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding