CmoCh04G017420 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G017420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	E3 ubiquitin-protein ligase RING1-like
Location	Cmo_Chr04: 8810389 .. 8810994 (+)
RNA-Seq Expression	CmoCh04G017420
Synteny	CmoCh04G017420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGACCCAGTCGCTTCTGAGCTTTCTTCTGCCTTCGAAAGCCTGGTTTTCATCAACAGAGACATCTCTCCCATCGCACCCCTTTTCTTGGGTTTCGCCTCCGTCATCCGTTCAGCCGACCCTCAATCCCCAAATCCAGAAATTCAAACAATACCCACTTTGCCGAACCGATTCATCTTCTTTAATCCCTTTCCCCCTCAATTGATGGTGATCCAAGCCACTCCCAAGGAAGGCCAACCCCCTGCCTCTAAAGCCTCCATCAAAGCCATGCCCTCTCTCCCTGTCTCTGAACTTACTGAATGTGTGATTTGTTTAGAGGAGATTGAAGCGGGTGACCTCGCCAAACAAATGCCCTGTTCCCATAAATTCCATGGCGATTGCATTGAGAAGTGGCTGGAGTTACATGGGTCGTGCCCTATTTGTAGATATCAGATGCCAATTGACGATGAAGATGAAGGAAAGAAGGTTGATGAAGAAGGGTCAGAGAGGAGAGGAGAAAGGGAGATTTGGGTGAGTTTCTCTTTTGATAATGTTACCAGAAATGGGGAATCTGTTCAAACCCCCCCTTCAACATATTCTGATCATTCTTTTGTACAGTGA

mRNA sequence

ATGGCTTCCGACCCAGTCGCTTCTGAGCTTTCTTCTGCCTTCGAAAGCCTGGTTTTCATCAACAGAGACATCTCTCCCATCGCACCCCTTTTCTTGGGTTTCGCCTCCGTCATCCGTTCAGCCGACCCTCAATCCCCAAATCCAGAAATTCAAACAATACCCACTTTGCCGAACCGATTCATCTTCTTTAATCCCTTTCCCCCTCAATTGATGGTGATCCAAGCCACTCCCAAGGAAGGCCAACCCCCTGCCTCTAAAGCCTCCATCAAAGCCATGCCCTCTCTCCCTGTCTCTGAACTTACTGAATGTGTGATTTGTTTAGAGGAGATTGAAGCGGGTGACCTCGCCAAACAAATGCCCTGTTCCCATAAATTCCATGGCGATTGCATTGAGAAGTGGCTGGAGTTACATGGGTCGTGCCCTATTTGTAGATATCAGATGCCAATTGACGATGAAGATGAAGGAAAGAAGGTTGATGAAGAAGGGTCAGAGAGGAGAGGAGAAAGGGAGATTTGGGTGAGTTTCTCTTTTGATAATGTTACCAGAAATGGGGAATCTGTTCAAACCCCCCCTTCAACATATTCTGATCATTCTTTTGTACAGTGA

Coding sequence (CDS)

ATGGCTTCCGACCCAGTCGCTTCTGAGCTTTCTTCTGCCTTCGAAAGCCTGGTTTTCATCAACAGAGACATCTCTCCCATCGCACCCCTTTTCTTGGGTTTCGCCTCCGTCATCCGTTCAGCCGACCCTCAATCCCCAAATCCAGAAATTCAAACAATACCCACTTTGCCGAACCGATTCATCTTCTTTAATCCCTTTCCCCCTCAATTGATGGTGATCCAAGCCACTCCCAAGGAAGGCCAACCCCCTGCCTCTAAAGCCTCCATCAAAGCCATGCCCTCTCTCCCTGTCTCTGAACTTACTGAATGTGTGATTTGTTTAGAGGAGATTGAAGCGGGTGACCTCGCCAAACAAATGCCCTGTTCCCATAAATTCCATGGCGATTGCATTGAGAAGTGGCTGGAGTTACATGGGTCGTGCCCTATTTGTAGATATCAGATGCCAATTGACGATGAAGATGAAGGAAAGAAGGTTGATGAAGAAGGGTCAGAGAGGAGAGGAGAAAGGGAGATTTGGGTGAGTTTCTCTTTTGATAATGTTACCAGAAATGGGGAATCTGTTCAAACCCCCCCTTCAACATATTCTGATCATTCTTTTGTACAGTGA

Protein sequence

MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRFIFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMPCSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNVTRNGESVQTPPSTYSDHSFVQ

Homology

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BLAST of CmoCh04G017420 vs. ExPASy Swiss-Prot
Match: Q9LQX2 (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.7e-32
Identity = 74/176 (42.05%), Postives = 101/176 (57.39%), Query Frame = 0


Query: 21  NRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRFIFFNPFPPQLMVIQATP--- 80
           NRD+    P  LGF      +D +S N +   + +   R I  NPF   ++V++ +    
Sbjct: 23  NRDLYLFLPFLLGF------SDQESSNGDDDDVASSRERIILVNPFTQGMIVLEGSSGMN 82

Query: 81  ----------KEGQPPASKASIKAMPSLPVSELT-ECVICLEEIEAGDLAKQMPCSHKFH 140
                     +EG+PPASKASI AMP + +     ECVICLEE ++ +  K+MPC H+FH
Sbjct: 83  PLLRSLLESREEGRPPASKASIDAMPIVEIDGCEGECVICLEEWKSEETVKEMPCKHRFH 142

Query: 141 GDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNVTR 183
           G CIEKWL  HGSCP+CRY+MP+D ++ GKK       R    EIWV FSF++  R
Sbjct: 143 GGCIEKWLGFHGSCPVCRYEMPVDGDEIGKK-------RNDGNEIWVRFSFNDGRR 185

[Close]

BLAST of CmoCh04G017420 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-21
Identity = 61/165 (36.97%), Postives = 88/165 (53.33%), Query Frame = 0


Query: 11  SSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF--IFFNPFPP 70
           S AF+   F+   +  +      F  VI +  P  P         +P  F   FF P   
Sbjct: 120 SDAFDPFTFLQNHLQTLRSSGTHFEFVIEN-HPSDPGNR------MPGNFGDYFFGPGLE 179

Query: 71  QLM--VIQATP-KEGQPPASKASIKAMPSLPV------SELTECVICLEEIEAGDLAKQM 130
           QL+  + +  P + G PPASK++I A+P++ V      SE+ +C +C++E E G   KQM
Sbjct: 180 QLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQM 239

Query: 131 PCSHKFHGDCIEKWLELHGSCPICRYQMPIDDED-EGKKVDEEGS 164
           PC H FH DC+  WLELH SCP+CR+++P DD D E +    +GS
Sbjct: 240 PCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPDYENRSQGSQGS 277

[Close]

BLAST of CmoCh04G017420 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.3e-20
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 78  KEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMPCSHKFHGDCIEKWLELH 137
           + G PPA K +++A+P++ + E+  C +CL+++E G  AKQMPC HKFH  CI  WLELH
Sbjct: 174 RNGTPPAKKEAVEALPTVKIEEVVSCSVCLDDLEVGSQAKQMPCEHKFHSSCILPWLELH 233

Query: 138 GSCPICRYQMPIDDEDEGKKVDEEGSERRGE 169
            SCP+CR+++P    +E K ++E  +  R E
Sbjct: 234 SSCPVCRFELP---SEETKDLNEPSNIGRVE 261

[Close]

BLAST of CmoCh04G017420 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.5e-20
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 80  GQPPASKASIKAMPSLPV------SELTECVICLEEIEAGDLAKQMPCSHKFHGDCIEKW 139
           G PPASK++I+A+P + +      SE  +C +C+++ E G  AKQMPC H +H DC+  W
Sbjct: 195 GTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPW 254

Query: 140 LELHGSCPICRYQMPIDDEDEGKKV 159
           LELH SCP+CR+++P DD D  ++V
Sbjct: 255 LELHNSCPVCRHELPTDDPDYERRV 279

[Close]

BLAST of CmoCh04G017420 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-16
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 78  KEGQPPASKASIKAMPSLPVSEL-----TECVICLEEIEAGDLAKQMPCSHKFHGDCIEK 137
           + G PPASK++I+++P + +S+        C +C E  EAG   ++MPC H FHGDCI  
Sbjct: 185 RSGNPPASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVP 244

Query: 138 WLELHGSCPICRYQMPID 151
           WL +  SCP+CR+++P D
Sbjct: 245 WLSIRNSCPVCRFELPSD 262

[Close]

BLAST of CmoCh04G017420 vs. ExPASy TrEMBL
Match: A0A6J1GWR8 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC111458226 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 2.9e-111
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF 60
           MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF
Sbjct: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF 60

Query: 61  IFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP 120
           IFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP
Sbjct: 61  IFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP 120

Query: 121 CSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNV 180
           CSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNV
Sbjct: 121 CSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNV 180

Query: 181 TRNGESVQTPPSTYSDHSFVQ 202
           TRNGESVQTPPSTYSDHSFVQ
Sbjct: 181 TRNGESVQTPPSTYSDHSFVQ 201

[Close]

BLAST of CmoCh04G017420 vs. ExPASy TrEMBL
Match: A0A5D3D3N1 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00370 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 6.0e-77
Identity = 150/201 (74.63%), Postives = 171/201 (85.07%), Query Frame = 0


Query: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF 60
           MAS P  S++SSA E L+ +NRD+S IAPLFLGFAS+IRS+      P   T  TLP+RF
Sbjct: 1   MASPPDPSDISSALERLL-LNRDVSLIAPLFLGFASMIRSSQNHENEP---TPTTLPDRF 60

Query: 61  IFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP 120
           IFFNPF  QLMV+QATPK+GQPPASKASIKAMPSLPVSE+TECVICL+EIE G LAKQMP
Sbjct: 61  IFFNPFSHQLMVVQATPKDGQPPASKASIKAMPSLPVSEVTECVICLDEIEVGGLAKQMP 120

Query: 121 CSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNV 180
           C+HKFHG+CI+KWLELHGSCP+CRYQMPID +DEGKKV +EG+E RGE EIWVSFSFD+ 
Sbjct: 121 CNHKFHGECIQKWLELHGSCPVCRYQMPIDGDDEGKKVGDEGTESRGETEIWVSFSFDHS 180

Query: 181 TRNGESVQTPPSTYSDHSFVQ 202
            RNGESVQT PST SDHS+VQ
Sbjct: 181 IRNGESVQT-PSTDSDHSYVQ 196

[Close]

BLAST of CmoCh04G017420 vs. ExPASy TrEMBL
Match: A0A0A0KU18 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G605210 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 6.0e-77
Identity = 150/201 (74.63%), Postives = 171/201 (85.07%), Query Frame = 0


Query: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF 60
           MAS P  S+L+SA E L+ +NRD+S IAPLFLGFAS++RS+  Q  +P   T  TLP+RF
Sbjct: 1   MASPPDPSDLASALERLL-LNRDVSLIAPLFLGFASMVRSSQNQESDP---TPTTLPDRF 60

Query: 61  IFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP 120
           IFFNPF  QLMV+QATPK GQPPASKASIKAMPSLPVSE+TECVICL+EIE G LAKQMP
Sbjct: 61  IFFNPFSHQLMVVQATPKHGQPPASKASIKAMPSLPVSEVTECVICLDEIEVGRLAKQMP 120

Query: 121 CSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNV 180
           C+HKFHGDCI+KWLELHGSCP+CRYQMPID +DEGKKV +EG+E RGE EIWVSFSFD+ 
Sbjct: 121 CNHKFHGDCIQKWLELHGSCPVCRYQMPIDGDDEGKKVGDEGAESRGETEIWVSFSFDHS 180

Query: 181 TRNGESVQTPPSTYSDHSFVQ 202
             NGESVQT PST SDHS+VQ
Sbjct: 181 IGNGESVQT-PSTESDHSYVQ 196

[Close]

BLAST of CmoCh04G017420 vs. ExPASy TrEMBL
Match: A0A1S3BFQ2 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103489128 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 6.0e-77
Identity = 150/201 (74.63%), Postives = 171/201 (85.07%), Query Frame = 0


Query: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF 60
           MAS P  S++SSA E L+ +NRD+S IAPLFLGFAS+IRS+      P   T  TLP+RF
Sbjct: 1   MASPPDPSDISSALERLL-LNRDVSLIAPLFLGFASMIRSSQNHENEP---TPTTLPDRF 60

Query: 61  IFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP 120
           IFFNPF  QLMV+QATPK+GQPPASKASIKAMPSLPVSE+TECVICL+EIE G LAKQMP
Sbjct: 61  IFFNPFSHQLMVVQATPKDGQPPASKASIKAMPSLPVSEVTECVICLDEIEVGGLAKQMP 120

Query: 121 CSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNV 180
           C+HKFHG+CI+KWLELHGSCP+CRYQMPID +DEGKKV +EG+E RGE EIWVSFSFD+ 
Sbjct: 121 CNHKFHGECIQKWLELHGSCPVCRYQMPIDGDDEGKKVGDEGTESRGETEIWVSFSFDHS 180

Query: 181 TRNGESVQTPPSTYSDHSFVQ 202
            RNGESVQT PST SDHS+VQ
Sbjct: 181 IRNGESVQT-PSTDSDHSYVQ 196

[Close]

BLAST of CmoCh04G017420 vs. ExPASy TrEMBL
Match: A0A6J1HTX2 (E3 ubiquitin-protein ligase RING1-like OS=Cucurbita maxima OX=3661 GN=LOC111467433 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.1e-73
Identity = 141/202 (69.80%), Postives = 169/202 (83.66%), Query Frame = 0


Query: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF 60
           M S+P  SELSSA E+L+ +N D+S +AP FLGFA++I +  PQSPN  I+T PTLP+RF
Sbjct: 1   MPSEPDPSELSSALETLI-LNTDVSLLAPHFLGFATMIHTIAPQSPNQGIETNPTLPDRF 60

Query: 61  IFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP 120
           IFFNPF  QL++IQ+TPK  QPPASKASI AMPS+ VS  TECVICL+EIE G +AK+MP
Sbjct: 61  IFFNPFLHQLIMIQSTPKNSQPPASKASIIAMPSVHVSAQTECVICLDEIEVGGVAKEMP 120

Query: 121 CSHKFHGDCIEKWLELHGSCPICRYQMPI-DDEDEGKKVDEEGSERRGEREIWVSFSFDN 180
           C+HKFHGDCIEKWLELHGSCP+CRY+MP+ DDEDEGKKV++EG+ER GEREIWVSFSFDN
Sbjct: 121 CNHKFHGDCIEKWLELHGSCPVCRYEMPVDDDEDEGKKVEDEGTERMGEREIWVSFSFDN 180

Query: 181 VTRNGESVQTPPSTYSDHSFVQ 202
              N +S+QTPP   SDHS+VQ
Sbjct: 181 PMGNQDSLQTPPID-SDHSYVQ 200

[Close]

BLAST of CmoCh04G017420 vs. NCBI nr
Match: XP_022956506.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata] >KAG7032220.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 411.0 bits (1055), Expect = 5.9e-111
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF 60
           MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF
Sbjct: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF 60

Query: 61  IFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP 120
           IFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP
Sbjct: 61  IFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP 120

Query: 121 CSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNV 180
           CSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNV
Sbjct: 121 CSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNV 180

Query: 181 TRNGESVQTPPSTYSDHSFVQ 202
           TRNGESVQTPPSTYSDHSFVQ
Sbjct: 181 TRNGESVQTPPSTYSDHSFVQ 201

[Close]

BLAST of CmoCh04G017420 vs. NCBI nr
Match: KAG6601438.1 (E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 404.4 bits (1038), Expect = 5.6e-109
Identity = 199/201 (99.00%), Postives = 199/201 (99.00%), Query Frame = 0


Query: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF 60
           MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF
Sbjct: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF 60

Query: 61  IFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP 120
           IFFNPFPPQLMVIQATPKEG PPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP
Sbjct: 61  IFFNPFPPQLMVIQATPKEGLPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP 120

Query: 121 CSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNV 180
           CSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNV
Sbjct: 121 CSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNV 180

Query: 181 TRNGESVQTPPSTYSDHSFVQ 202
           TRNGESVQTPPST SDHSFVQ
Sbjct: 181 TRNGESVQTPPSTDSDHSFVQ 201

[Close]

BLAST of CmoCh04G017420 vs. NCBI nr
Match: XP_023547759.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 403.7 bits (1036), Expect = 9.5e-109
Identity = 197/201 (98.01%), Postives = 199/201 (99.00%), Query Frame = 0


Query: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF 60
           MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF
Sbjct: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF 60

Query: 61  IFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP 120
           IFFNPFPPQLMVI ATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP
Sbjct: 61  IFFNPFPPQLMVIHATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP 120

Query: 121 CSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNV 180
           C+HKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKK+DEEGSERRGEREIWVSFSFDNV
Sbjct: 121 CTHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKIDEEGSERRGEREIWVSFSFDNV 180

Query: 181 TRNGESVQTPPSTYSDHSFVQ 202
           TRNGESVQTPPST SDHSFVQ
Sbjct: 181 TRNGESVQTPPSTDSDHSFVQ 201

[Close]

BLAST of CmoCh04G017420 vs. NCBI nr
Match: XP_023523013.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.2 bits (962), Expect = 3.6e-100
Identity = 186/201 (92.54%), Postives = 191/201 (95.02%), Query Frame = 0


Query: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF 60
           MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF
Sbjct: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF 60

Query: 61  IFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP 120
           IFFNPFPPQLMVI ATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP
Sbjct: 61  IFFNPFPPQLMVIHATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMP 120

Query: 121 CSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNV 180
           C+HKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKK+DEEGSERRGEREIWVSFSFDN 
Sbjct: 121 CTHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKIDEEGSERRGEREIWVSFSFDNP 180

Query: 181 TRNGESVQTPPSTYSDHSFVQ 202
             N +S+QT PS  S HS+ Q
Sbjct: 181 MGNQDSLQT-PSIDSHHSYEQ 200

[Close]

BLAST of CmoCh04G017420 vs. NCBI nr
Match: XP_038891708.1 (E3 ubiquitin-protein ligase MPSR1-like [Benincasa hispida])

HSP 1 Score: 304.3 bits (778), Expect = 7.8e-79
Identity = 156/202 (77.23%), Postives = 172/202 (85.15%), Query Frame = 0


Query: 1   MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIP-TLPNR 60
           MAS P  SEL SA E L F+NRD+S IAPLFLGFAS+IR++  Q    EI+  P TLP+R
Sbjct: 1   MASQPDPSELGSALERL-FLNRDVSLIAPLFLGFASMIRTSQDQ----EIEATPTTLPDR 60

Query: 61  FIFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQM 120
           FIFFNPF  QL+VIQATPK+GQPPASKASIKAMPS+PVSELTECVICLEEIE G L+KQM
Sbjct: 61  FIFFNPFAHQLIVIQATPKDGQPPASKASIKAMPSVPVSELTECVICLEEIEVGGLSKQM 120

Query: 121 PCSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDN 180
           PC+HKFHGDCI+KWLELHGSCP+CRYQMPID EDEGKKVD EG+E RGE EIWVSFSFDN
Sbjct: 121 PCNHKFHGDCIQKWLELHGSCPVCRYQMPIDGEDEGKKVDNEGTESRGETEIWVSFSFDN 180

Query: 181 VTRNGESVQTPPSTYSDHSFVQ 202
             RNGES+QT PST SDHS VQ
Sbjct: 181 TIRNGESIQT-PSTDSDHSDVQ 196

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BLAST of CmoCh04G017420 vs. TAIR 10
Match: AT1G26800.1 (RING/U-box superfamily protein )

HSP 1 Score: 139.0 bits (349), Expect = 4.1e-33
Identity = 74/176 (42.05%), Postives = 101/176 (57.39%), Query Frame = 0


Query: 21  NRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRFIFFNPFPPQLMVIQATP--- 80
           NRD+    P  LGF      +D +S N +   + +   R I  NPF   ++V++ +    
Sbjct: 23  NRDLYLFLPFLLGF------SDQESSNGDDDDVASSRERIILVNPFTQGMIVLEGSSGMN 82

Query: 81  ----------KEGQPPASKASIKAMPSLPVSELT-ECVICLEEIEAGDLAKQMPCSHKFH 140
                     +EG+PPASKASI AMP + +     ECVICLEE ++ +  K+MPC H+FH
Sbjct: 83  PLLRSLLESREEGRPPASKASIDAMPIVEIDGCEGECVICLEEWKSEETVKEMPCKHRFH 142

Query: 141 GDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNVTR 183
           G CIEKWL  HGSCP+CRY+MP+D ++ GKK       R    EIWV FSF++  R
Sbjct: 143 GGCIEKWLGFHGSCPVCRYEMPVDGDEIGKK-------RNDGNEIWVRFSFNDGRR 185

[Close]

BLAST of CmoCh04G017420 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-22
Identity = 61/165 (36.97%), Postives = 88/165 (53.33%), Query Frame = 0


Query: 11  SSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRF--IFFNPFPP 70
           S AF+   F+   +  +      F  VI +  P  P         +P  F   FF P   
Sbjct: 120 SDAFDPFTFLQNHLQTLRSSGTHFEFVIEN-HPSDPGNR------MPGNFGDYFFGPGLE 179

Query: 71  QLM--VIQATP-KEGQPPASKASIKAMPSLPV------SELTECVICLEEIEAGDLAKQM 130
           QL+  + +  P + G PPASK++I A+P++ V      SE+ +C +C++E E G   KQM
Sbjct: 180 QLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQM 239

Query: 131 PCSHKFHGDCIEKWLELHGSCPICRYQMPIDDED-EGKKVDEEGS 164
           PC H FH DC+  WLELH SCP+CR+++P DD D E +    +GS
Sbjct: 240 PCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPDYENRSQGSQGS 277

[Close]

BLAST of CmoCh04G017420 vs. TAIR 10
Match: AT1G14200.1 (RING/U-box superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 5.5e-22
Identity = 59/184 (32.07%), Postives = 92/184 (50.00%), Query Frame = 0


Query: 1   MASDPVASELSSAFESLVFINRD-ISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNR 60
           M+S+    E SS FE ++    D +S   P+ +  A+     D  S +   +    L  R
Sbjct: 1   MSSENDFVEFSSMFERIIQGRGDGLSRFLPVIVALAAREDDDDQGSTDQTTRRGDPLSPR 60

Query: 61  FIFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTE-----CVICLEEIEAGD 120
           F+                K+G+ PA K+ ++ MP + + E  E     C ICL+E   GD
Sbjct: 61  FVMIGSRSGLDDFFSDGGKQGRSPALKSEVENMPRVVIGEDKEKYGGSCAICLDEWSKGD 120

Query: 121 LAKQMPCSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVS 179
           +A +MPC HKFH  C+E+WL  H +CP+CRY+MP+++ +E KK+            IW+ 
Sbjct: 121 VAAEMPCKHKFHSKCVEEWLGRHATCPMCRYEMPVEEVEEEKKIG-----------IWIG 173

[Close]

BLAST of CmoCh04G017420 vs. TAIR 10
Match: AT5G56340.1 (RING/U-box superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 7.2e-22
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 78  KEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMPCSHKFHGDCIEKWLELH 137
           ++G PPA K +++A+P++ + E  +C +CL++ E G  AK+MPC HKFH  CI  WLELH
Sbjct: 234 RQGTPPARKEAVEALPTVKIMEPLQCSVCLDDFEKGTEAKEMPCKHKFHVRCIVPWLELH 293

Query: 138 GSCPICRYQMP--IDDEDEGKKVDEEGSERRGERE 171
            SCP+CR+++P   DD+DE K   E     R  RE
Sbjct: 294 SSCPVCRFELPSSADDDDETKTDSERVLRTRNVRE 328

[Close]

BLAST of CmoCh04G017420 vs. TAIR 10
Match: AT1G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 99.8 bits (247), Expect = 2.7e-21
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 80  GQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMPCSHKFHGDCIEKWLELHGS 139
           G PPA K +++A+ ++ + E  +C +CL++ E G  AK MPC+HKFH DC+  WLELH S
Sbjct: 200 GTPPAKKEAVEALATVKIEETLQCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSS 259

Query: 140 CPICRYQMPIDD 152
           CP+CRYQ+P D+
Sbjct: 260 CPVCRYQLPADE 271

The following BLAST results are available for this feature:

BLAST of CmoCh04G017420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQX2	5.7e-32	42.05	E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 ...	[more]
Q8LPN7	2.0e-21	36.97	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q6AVN2	1.3e-20	45.05	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]
P0CH30	6.5e-20	47.06	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q9SNB6	1.5e-16	43.59	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]

BLAST of CmoCh04G017420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GWR8	2.9e-111	100.00	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A5D3D3N1	6.0e-77	74.63	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0KU18	6.0e-77	74.63	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G605210 P...	[more]
A0A1S3BFQ2	6.0e-77	74.63	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103489128 P...	[more]
A0A6J1HTX2	4.1e-73	69.80	E3 ubiquitin-protein ligase RING1-like OS=Cucurbita maxima OX=3661 GN=LOC1114674...	[more]

BLAST of CmoCh04G017420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956506.1	5.9e-111	100.00	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata] >KAG7032220.1 E3 ubi...	[more]
KAG6601438.1	5.6e-109	99.00	E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023547759.1	9.5e-109	98.01	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023523013.1	3.6e-100	92.54	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038891708.1	7.8e-79	77.23	E3 ubiquitin-protein ligase MPSR1-like [Benincasa hispida]	[more]

BLAST of CmoCh04G017420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26800.1	4.1e-33	42.05	RING/U-box superfamily protein	[more]
AT3G19950.1	1.4e-22	36.97	RING/U-box superfamily protein	[more]
AT1G14200.1	5.5e-22	32.07	RING/U-box superfamily protein	[more]
AT5G56340.1	7.2e-22	46.32	RING/U-box superfamily protein	[more]
AT1G55530.1	2.7e-21	51.39	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 103..143 e-value: 6.4E-8 score: 42.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 102..144 e-value: 2.1E-14 score: 53.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 103..144 score: 12.769585
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 72..150 e-value: 1.1E-21 score: 78.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..201
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 74..160
None	No IPR available	PANTHER	PTHR15710:SF132	E3 UBIQUITIN-PROTEIN LIGASE MPSR1	coord: 74..160
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 102..144 e-value: 1.3081E-20 score: 78.8829
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 102..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G017420.1	CmoCh04G017420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity