CmoCh04G016920 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G016920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr04: 8591788 .. 8592757 (+)
RNA-Seq Expression	CmoCh04G016920
Synteny	CmoCh04G016920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAATTGGAAATTCAAGAACAGAGGAACACAGAAGAACAAACAAGTTTTGCAGCTTTAGTCCAATTCTGTACATACTATATTATAACTTATAAGTGGGTTAATTTAATCAGGAAGGTTCTTTTACCTGATGAATTCATTCATTTTTTCCCCTTTTTATTTCCTGTTTATGTTTATCCCATTCATTCTACAATTGGGTTTATCAGGTAAGATTATCTCAAGTTCTGGCATTCAAATATTGAGAAATTCTGGAGATGAGGGATTTAACATGACTGTGTTACAACAGAATTTGATCACAATTTGTTACATCCCCTTTCAAATTGTTTTCCCTCCCTTTCTACGATCGGACCCGAAGTGATCGTGTTTCTAGGGATTGAAACGAAAGAAATCGAGCTCGATCAATGTTATTATAAGAACACAGATCGAAAGAGCTTTAGAAAGAGGCGCCGGAAACTGATCGGAAAGTGGTGGTTTGAACATTTGATGACGAAACCCTCAAGAGATCCGGCCGGACGTAGCAGAACGAACGCCGCAGCCATTCATCCAGTGGATTCGATAGAGGGGAAGAGGTAGATGAAGAGGGAGGGAAGACCGGGAGGAGTCAGGAGAGAGTATATTTTATTTTTTAAAAAATTAACTCAACAACTAAAATGGTAATTTAAGGACCAAATATACGGATTAAAAGGATTAATTCTCCAAATGATTGACCTAATATTGAAAAAGAATTTATACTTGGTTAGAACAGTTTCAGGTGGGAGATGCGTGGAGGAGGCGATGATCGGCATCAGAACGCAGATGCTGAATGTAAGCAATTAGCAAATTCTATATTAATGGAAAACGACAGCCATTGTTGTCCTCGCACGCCCCGTTGCTTCCTTAATCATCGTAATAAATTTATGCGATTTGGACCGACATGGGGTTCGACTTTGGTTGGGCACTCTCAGACACCAACACCACGTCGTAAGTGA

mRNA sequence

ATGGATCGAAAGAGCTTTAGAAAGAGGCGCCGGAAACTGATCGGAAAGTGGTGGTTTGAACATTTGATGACGAAACCCTCAAGAGATCCGGCCGGACGTAGCAGAACGAACGCCGCAGCCATTCATCCAGTGGATTCGATAGAGGGGAAGAGGTGGGAGATGCGTGGAGGAGGCGATGATCGGCATCAGAACGCAGATGCTGAATGTAAGCAATTAGCAAATTCTATATTAATGGAAAACGACAGCCATTGTTGTCCTCGCACGCCCCGTTGCTTCCTTAATCATCGTAATAAATTTATGCGATTTGGACCGACATGGGGTTCGACTTTGGTTGGGCACTCTCAGACACCAACACCACGTCGTAAGTGA

Coding sequence (CDS)

ATGGATCGAAAGAGCTTTAGAAAGAGGCGCCGGAAACTGATCGGAAAGTGGTGGTTTGAACATTTGATGACGAAACCCTCAAGAGATCCGGCCGGACGTAGCAGAACGAACGCCGCAGCCATTCATCCAGTGGATTCGATAGAGGGGAAGAGGTGGGAGATGCGTGGAGGAGGCGATGATCGGCATCAGAACGCAGATGCTGAATGTAAGCAATTAGCAAATTCTATATTAATGGAAAACGACAGCCATTGTTGTCCTCGCACGCCCCGTTGCTTCCTTAATCATCGTAATAAATTTATGCGATTTGGACCGACATGGGGTTCGACTTTGGTTGGGCACTCTCAGACACCAACACCACGTCGTAAGTGA

Protein sequence

MDRKSFRKRRRKLIGKWWFEHLMTKPSRDPAGRSRTNAAAIHPVDSIEGKRWEMRGGGDDRHQNADAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGSTLVGHSQTPTPRRK

Homology

[Close]

BLAST of CmoCh04G016920 vs. ExPASy TrEMBL
Match: A0A6J1JK60 (uncharacterized protein LOC111487647 OS=Cucurbita maxima OX=3661 GN=LOC111487647 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.5e-57
Identity = 112/136 (82.35%), Postives = 115/136 (84.56%), Query Frame = 0


Query: 2   DRKSFRKRRRKLIGKWWFEHLMTKPSRDPAGRSRTNAAAIHPVDSI-------------E 61
           D+K FRKRRRKL+GKWWFEHLMTK SRDPAGRSRTNAAA+HP DSI             E
Sbjct: 84  DQKRFRKRRRKLMGKWWFEHLMTKASRDPAGRSRTNAAALHPGDSIAKRKYPTADSEIVE 143

Query: 62  GK--RWEMRGGGDDRHQNADAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTW 121
           GK  RWEMRGGGDDRHQNA A CKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTW
Sbjct: 144 GKSFRWEMRGGGDDRHQNAAAGCKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTW 203

Query: 122 GSTLVGHSQTPTPRRK 123
           G TLVGHSQTPTPRRK
Sbjct: 204 GWTLVGHSQTPTPRRK 219

[Close]

BLAST of CmoCh04G016920 vs. NCBI nr
Match: XP_022990897.1 (uncharacterized protein LOC111487647 [Cucurbita maxima])

HSP 1 Score: 231.1 bits (588), Expect = 5.1e-57
Identity = 112/136 (82.35%), Postives = 115/136 (84.56%), Query Frame = 0


Query: 2   DRKSFRKRRRKLIGKWWFEHLMTKPSRDPAGRSRTNAAAIHPVDSI-------------E 61
           D+K FRKRRRKL+GKWWFEHLMTK SRDPAGRSRTNAAA+HP DSI             E
Sbjct: 84  DQKRFRKRRRKLMGKWWFEHLMTKASRDPAGRSRTNAAALHPGDSIAKRKYPTADSEIVE 143

Query: 62  GK--RWEMRGGGDDRHQNADAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTW 121
           GK  RWEMRGGGDDRHQNA A CKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTW
Sbjct: 144 GKSFRWEMRGGGDDRHQNAAAGCKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTW 203

Query: 122 GSTLVGHSQTPTPRRK 123
           G TLVGHSQTPTPRRK
Sbjct: 204 GWTLVGHSQTPTPRRK 219

[Close]

BLAST of CmoCh04G016920 vs. NCBI nr
Match: KAG6601396.1 (Tetratricopeptide repeat protein 38, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.0 bits (380), Expect = 6.7e-33
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 54  MRGGGDDRHQNADAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGSTLVGH 113
           MRGGGDDRHQNA+AECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGS LVGH
Sbjct: 1   MRGGGDDRHQNAEAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGSALVGH 60

Query: 114 SQTPTPRR 122
           SQTPTPRR
Sbjct: 61  SQTPTPRR 68

[Close]

BLAST of CmoCh04G016920 vs. NCBI nr
Match: KAG7032174.1 (Tetratricopeptide repeat protein 38, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 2.6e-32
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 54  MRGGGDDRHQNADAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGSTLVGH 113
           MRGGGDDRHQNA+AECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGS LVGH
Sbjct: 1   MRGGGDDRHQNAEAECKQLANSILMENDSHCCPRTPRCFLNHRNKFMRFGPTWGSALVGH 60

Query: 114 SQTPTPR 121
           SQTPTPR
Sbjct: 61  SQTPTPR 67

The following BLAST results are available for this feature:

BLAST of CmoCh04G016920 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G016920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JK60	2.5e-57	82.35	uncharacterized protein LOC111487647 OS=Cucurbita maxima OX=3661 GN=LOC111487647...	[more]

BLAST of CmoCh04G016920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990897.1	5.1e-57	82.35	uncharacterized protein LOC111487647 [Cucurbita maxima]	[more]
KAG6601396.1	6.7e-33	97.06	Tetratricopeptide repeat protein 38, partial [Cucurbita argyrosperma subsp. soro...	[more]
KAG7032174.1	2.6e-32	97.01	Tetratricopeptide repeat protein 38, partial [Cucurbita argyrosperma subsp. argy...	[more]

BLAST of CmoCh04G016920 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G016920.1	CmoCh04G016920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane