CmoCh04G016640 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G016640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like
Location	Cmo_Chr04: 8463855 .. 8464890 (-)
RNA-Seq Expression	CmoCh04G016640
Synteny	CmoCh04G016640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGATAACCCCATCCAATGGCGTCCTACAGTTGCGTTCTGGTTTCAGCCATTGCAGTTTCTCCCGCCAAGACTACATGCTTCAACGGACTTAATTATCCAACATTTTTCCCTTCTTCTTCTTCCCTTGTAAACCCCTTTGTTAATTGTACCTTAACTTCTTCCATCATATACAGAGCAACTCCGGCCCCGGCCACGGCCACCTGCGTTTACCCTGATCCGATACCGGAGTTTGCAGAAGTTGTAAGTTTTTTGCGACGTAGCTTCTTTGTCTGCTTAAATTGATTCCGGTTTGTGTTATGCGACCGCGTTGATTAATTCATTTGGTTGTTTTTCGCAGGAAACCAAGAAATTTAAGGAGCAGTTATCGAAGAAGCTAGCGAAGGATCGCGAGACGTTTGGGAACGACCTCGATTCGGTTGTGGAGGTTTGCTCAAAGGTAATCATTGTTATAGAATGAAGAGGTTGTGATTTTCTAGTTTGAATCCCTGATTTCGGTTGAAAAATGTGTCTGAATCAGATGATGCGATTGTTTGCTTAGAGAGTTAGTTTAGTTTAATCGTGCTTTTGCCTTCAAGTGTTTCCATGGCTTGAGATGAATAATTGAGACCTGAGAAAACATCAGACCTGCCTATAGAGCTACAGAACGATCACTATTTCCAAGACAGCTTCATTAATTGCGCAAAATTGTTCCGAATGTTTGACCTATGCTGCCATTATTGATATACTTCTTGCATTTTGATTTTTTCAAACCAGAACTGAACGAATATTCCAATTTGAATTCAGATGTCCGAATTTATGTGAGCTTAACATGAATGTACTTTGCAAGTTTTGAGCAGATATTTAGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTAAACGAGAGGAAATTACCTGGAGCGCCTTTGGCTGCAAGAACTTCGCTTCTATGGGCTCAAAACTATCTAGATCACGATTGGAACATTTGGATCTCAAAACGAGGGCTCAAATGA

mRNA sequence

TGGGATAACCCCATCCAATGGCGTCCTACAGTTGCGTTCTGGTTTCAGCCATTGCAGTTTCTCCCGCCAAGACTACATGCTTCAACGGACTTAATTATCCAACATTTTTCCCTTCTTCTTCTTCCCTTGTAAACCCCTTTGTTAATTGTACCTTAACTTCTTCCATCATATACAGAGCAACTCCGGCCCCGGCCACGGCCACCTGCGTTTACCCTGATCCGATACCGGAGTTTGCAGAAGTTGAAACCAAGAAATTTAAGGAGCAGTTATCGAAGAAGCTAGCGAAGGATCGCGAGACGTTTGGGAACGACCTCGATTCGGTTGTGGAGGTTTGCTCAAAGATATTTAGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTAAACGAGAGGAAATTACCTGGAGCGCCTTTGGCTGCAAGAACTTCGCTTCTATGGGCTCAAAACTATCTAGATCACGATTGGAACATTTGGATCTCAAAACGAGGGCTCAAATGA

Coding sequence (CDS)

ATGGCGTCCTACAGTTGCGTTCTGGTTTCAGCCATTGCAGTTTCTCCCGCCAAGACTACATGCTTCAACGGACTTAATTATCCAACATTTTTCCCTTCTTCTTCTTCCCTTGTAAACCCCTTTGTTAATTGTACCTTAACTTCTTCCATCATATACAGAGCAACTCCGGCCCCGGCCACGGCCACCTGCGTTTACCCTGATCCGATACCGGAGTTTGCAGAAGTTGAAACCAAGAAATTTAAGGAGCAGTTATCGAAGAAGCTAGCGAAGGATCGCGAGACGTTTGGGAACGACCTCGATTCGGTTGTGGAGGTTTGCTCAAAGATATTTAGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTAAACGAGAGGAAATTACCTGGAGCGCCTTTGGCTGCAAGAACTTCGCTTCTATGGGCTCAAAACTATCTAGATCACGATTGGAACATTTGGATCTCAAAACGAGGGCTCAAATGA

Protein sequence

MASYSCVLVSAIAVSPAKTTCFNGLNYPTFFPSSSSLVNPFVNCTLTSSIIYRATPAPATATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK

Homology

[Close]

BLAST of CmoCh04G016640 vs. ExPASy Swiss-Prot
Match: Q9XIK0 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PRIN2 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.3e-28
Identity = 56/102 (54.90%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 65  YPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGGPGTL 124
           +PDPIPEFAE ET+KF++ +  KL+K R+ F + +D +V VC++IF  +L  EYGGPGTL
Sbjct: 75  FPDPIPEFAEAETEKFRDHMLNKLSK-RDLFEDSVDEIVGVCTEIFETFLRSEYGGPGTL 134

Query: 125 LVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIW 167
           LV PF +M   LNER+LPG P AAR ++ WAQ+++D DW  W
Sbjct: 135 LVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEW 175

[Close]

BLAST of CmoCh04G016640 vs. ExPASy Swiss-Prot
Match: B6UFC7 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Zea mays OX=4577 GN=PRIN2 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.9e-24
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 65  YPDPIPEFAEVETKKFKEQLSKKLAKDRET-FGNDLDSVVEVCSKIFSEYLHVEYGGPGT 124
           +PDPIPEFAE ET KF+E ++ +L + +E  FG+ ++ +V+VC++I   +L  +Y GPGT
Sbjct: 67  FPDPIPEFAEQETSKFREHMAWRLEQKKEDYFGDHVEEIVDVCTEIMGTFLENDYRGPGT 126

Query: 125 LLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIW 167
           LLV PF +M   + ER LPGAP AAR ++ WA+  +D DW  W
Sbjct: 127 LLVHPFLDMKGEIKERGLPGAPQAARAAIAWAEKNVDKDWKAW 169

[Close]

BLAST of CmoCh04G016640 vs. ExPASy Swiss-Prot
Match: Q6H612 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PRIN2 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.1e-23
Identity = 67/171 (39.18%), Postives = 93/171 (54.39%), Query Frame = 0


Query: 11  AIAVSPAKTTCFNGLNYPTFFPSSSSLVNPFVNCTLTSSIIYR---ATPAPATATC---- 70
           A AV+PA       LN P    S+SS  +   +  L  S++ R     P PA   C    
Sbjct: 7   AAAVAPAT------LNPPLLTLSASSSPS---SSRLRRSVLGRLRSRAPRPADFVCRRAK 66

Query: 71  -------VYPDPIPEFAEVETKKFKEQLSKKLAKDRET-FGNDLDSVVEVCSKIFSEYLH 130
                   +PDPIPEFA  ET KFKE +  +L + ++  FG  ++ +V+VC++I   +L 
Sbjct: 67  NAAYDDYKFPDPIPEFAAQETSKFKEHMMWRLEQKKDDYFGEHVEEIVDVCTEILGTFLE 126

Query: 131 VEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIW 167
            +Y GPGTLLV PF +M   + ER LPGAP AAR ++ WA+  +D DW  W
Sbjct: 127 HDYCGPGTLLVHPFLDMKGEIKERGLPGAPQAARAAIAWAEKNIDKDWKAW 168

[Close]

BLAST of CmoCh04G016640 vs. ExPASy TrEMBL
Match: A0A6J1GYK9 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458359 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 3.6e-94
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFFPSSSSLVNPFVNCTLTSSIIYRATPAPAT 60
           MASYSCVLVSAIAVSPAKTTCFNGLNYPTFFPSSSSLVNPFVNCTLTSSIIYRATPAPAT
Sbjct: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFFPSSSSLVNPFVNCTLTSSIIYRATPAPAT 60

Query: 61  ATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG 120
           ATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG
Sbjct: 61  ATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG 120

Query: 121 PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 174
           PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK
Sbjct: 121 PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 173

[Close]

BLAST of CmoCh04G016640 vs. ExPASy TrEMBL
Match: A0A6J1JDH3 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485796 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 6.8e-85
Identity = 163/173 (94.22%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFFPSSSSLVNPFVNCTLTSSIIYRATPAPAT 60
           MASYSCVLVSAIAVSPAKTTCFNGLNYPTF P SSSL  PFVNCTLTSSIIYRAT  PAT
Sbjct: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSP-SSSLGKPFVNCTLTSSIIYRAT--PAT 60

Query: 61  ATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG 120
           A+CVY DPIPEFAEVET+KFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG
Sbjct: 61  ASCVYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG 120

Query: 121 PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 174
           PGTLLVEPFTNMFIALNERKLPGAPLA RTSLLWAQNYLDHDWNIWISKRGLK
Sbjct: 121 PGTLLVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIWISKRGLK 170

[Close]

BLAST of CmoCh04G016640 vs. ExPASy TrEMBL
Match: A0A5A7SZ04 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00740 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.0e-73
Identity = 144/175 (82.29%), Postives = 152/175 (86.86%), Query Frame = 0


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTF--FPSSSSLVNPFVNCTLTSSIIYRATPAP 60
           MA Y C LVSAI VSPAK T FNGL+YPTF  FP   S V P VNCTLTSS+IYRAT  P
Sbjct: 1   MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFP---SFVKPLVNCTLTSSVIYRAT--P 60

Query: 61  ATATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEY 120
            TA+ VYP+PIPEFAEVET+KFKEQLSKKLAKDRETFGND DSVV+VCSKIF EYLHVEY
Sbjct: 61  ITASYVYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKIFGEYLHVEY 120

Query: 121 GGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 174
           GGPGTL+VEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLD+DWNIW SK G K
Sbjct: 121 GGPGTLIVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDNDWNIWNSKGGFK 170

[Close]

BLAST of CmoCh04G016640 vs. ExPASy TrEMBL
Match: A0A1S3BEK8 (uncharacterized protein LOC103489034 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489034 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.0e-73
Identity = 144/175 (82.29%), Postives = 152/175 (86.86%), Query Frame = 0


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTF--FPSSSSLVNPFVNCTLTSSIIYRATPAP 60
           MA Y C LVSAI VSPAK T FNGL+YPTF  FP   S V P VNCTLTSS+IYRAT  P
Sbjct: 1   MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFP---SFVKPLVNCTLTSSVIYRAT--P 60

Query: 61  ATATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEY 120
            TA+ VYP+PIPEFAEVET+KFKEQLSKKLAKDRETFGND DSVV+VCSKIF EYLHVEY
Sbjct: 61  ITASYVYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKIFGEYLHVEY 120

Query: 121 GGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 174
           GGPGTL+VEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLD+DWNIW SK G K
Sbjct: 121 GGPGTLIVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDNDWNIWNSKGGFK 170

[Close]

BLAST of CmoCh04G016640 vs. ExPASy TrEMBL
Match: A0A6J1DB25 (protein PLASTID REDOX INSENSITIVE 2-like OS=Momordica charantia OX=3673 GN=LOC111019054 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.1e-63
Identity = 130/169 (76.92%), Postives = 137/169 (81.07%), Query Frame = 0


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFFPSSSSLVNPFVNCTLTSSIIYRATPAPAT 60
           MA + C L+ A AV PAK TCFNGL +PTF P   SLV PFVNCT TSS  YRATP P  
Sbjct: 61  MALHGCALLLASAVPPAKITCFNGLLHPTFSP-FPSLVKPFVNCTSTSSFSYRATPLP-- 120

Query: 61  ATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG 120
              VYPDPIPEFAE ET+KF+E LSKKLA+DR TFGNDLD VVEVCSKIF EYLHVEYGG
Sbjct: 121 PKFVYPDPIPEFAEAETRKFREYLSKKLAEDRATFGNDLDFVVEVCSKIFGEYLHVEYGG 180

Query: 121 PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISK 170
           P TLLVEPFTNMFIALNERKLPGA LAARTSLLWAQN+LD DW IW SK
Sbjct: 181 PETLLVEPFTNMFIALNERKLPGASLAARTSLLWAQNHLDQDWTIWNSK 226

[Close]

BLAST of CmoCh04G016640 vs. NCBI nr
Match: XP_022956735.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022956736.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 354.0 bits (907), Expect = 7.4e-94
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFFPSSSSLVNPFVNCTLTSSIIYRATPAPAT 60
           MASYSCVLVSAIAVSPAKTTCFNGLNYPTFFPSSSSLVNPFVNCTLTSSIIYRATPAPAT
Sbjct: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFFPSSSSLVNPFVNCTLTSSIIYRATPAPAT 60

Query: 61  ATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG 120
           ATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG
Sbjct: 61  ATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG 120

Query: 121 PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 174
           PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK
Sbjct: 121 PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 173

[Close]

BLAST of CmoCh04G016640 vs. NCBI nr
Match: KAG6601371.1 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032155.1 Protein PLASTID REDOX INSENSITIVE 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 338.2 bits (866), Expect = 4.2e-89
Identity = 170/174 (97.70%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFFP-SSSSLVNPFVNCTLTSSIIYRATPAPA 60
           MASYSCVLVSAIAVSPAKTTCFNGLNYPTF P SSSSLVNPFVNCTLTSSIIYRATPAP 
Sbjct: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSSSLVNPFVNCTLTSSIIYRATPAP- 60

Query: 61  TATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYG 120
            ATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYG
Sbjct: 61  -ATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYG 120

Query: 121 GPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 174
           GPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK
Sbjct: 121 GPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 172

[Close]

BLAST of CmoCh04G016640 vs. NCBI nr
Match: XP_023513727.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 329.7 bits (844), Expect = 1.5e-86
Identity = 167/175 (95.43%), Postives = 168/175 (96.00%), Query Frame = 0


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFFP--SSSSLVNPFVNCTLTSSIIYRATPAP 60
           MASYSCVLVSAIAVSPAKTTCFNGLNYPTF P  SSSSLV PFVNCTLTSSIIYRAT  P
Sbjct: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSSSSLVKPFVNCTLTSSIIYRAT--P 60

Query: 61  ATATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEY 120
           ATA+CVY DPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEY
Sbjct: 61  ATASCVYHDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEY 120

Query: 121 GGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 174
           GGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK
Sbjct: 121 GGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 173

[Close]

BLAST of CmoCh04G016640 vs. NCBI nr
Match: XP_023513712.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023513720.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.3 bits (830), Expect = 6.3e-85
Identity = 167/178 (93.82%), Postives = 168/178 (94.38%), Query Frame = 0


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFFP--SSSSLVNPFVNCTLTSSIIYRATPAP 60
           MASYSCVLVSAIAVSPAKTTCFNGLNYPTF P  SSSSLV PFVNCTLTSSIIYRAT  P
Sbjct: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSSSSLVKPFVNCTLTSSIIYRAT--P 60

Query: 61  ATATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSK---IFSEYLH 120
           ATA+CVY DPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSK   IFSEYLH
Sbjct: 61  ATASCVYHDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKFEQIFSEYLH 120

Query: 121 VEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 174
           VEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK
Sbjct: 121 VEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 176

[Close]

BLAST of CmoCh04G016640 vs. NCBI nr
Match: XP_022988602.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 323.2 bits (827), Expect = 1.4e-84
Identity = 163/173 (94.22%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFFPSSSSLVNPFVNCTLTSSIIYRATPAPAT 60
           MASYSCVLVSAIAVSPAKTTCFNGLNYPTF P SSSL  PFVNCTLTSSIIYRAT  PAT
Sbjct: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSP-SSSLGKPFVNCTLTSSIIYRAT--PAT 60

Query: 61  ATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG 120
           A+CVY DPIPEFAEVET+KFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG
Sbjct: 61  ASCVYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG 120

Query: 121 PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 174
           PGTLLVEPFTNMFIALNERKLPGAPLA RTSLLWAQNYLDHDWNIWISKRGLK
Sbjct: 121 PGTLLVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIWISKRGLK 170

[Close]

BLAST of CmoCh04G016640 vs. TAIR 10
Match: AT1G10522.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-29
Identity = 56/102 (54.90%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 65  YPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGGPGTL 124
           +PDPIPEFAE ET+KF++ +  KL+K R+ F + +D +V VC++IF  +L  EYGGPGTL
Sbjct: 75  FPDPIPEFAEAETEKFRDHMLNKLSK-RDLFEDSVDEIVGVCTEIFETFLRSEYGGPGTL 134

Query: 125 LVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIW 167
           LV PF +M   LNER+LPG P AAR ++ WAQ+++D DW  W
Sbjct: 135 LVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEW 175

[Close]

BLAST of CmoCh04G016640 vs. TAIR 10
Match: AT1G10522.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 125.9 bits (315), Expect = 3.1e-29
Identity = 56/102 (54.90%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 65  YPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGGPGTL 124
           +PDPIPEFAE ET+KF++ +  KL+K R+ F + +D +V VC++IF  +L  EYGGPGTL
Sbjct: 75  FPDPIPEFAEAETEKFRDHMLNKLSK-RDLFEDSVDEIVGVCTEIFETFLRSEYGGPGTL 134

Query: 125 LVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIW 167
           LV PF +M   LNER+LPG P AAR ++ WAQ+++D DW  W
Sbjct: 135 LVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEW 175

The following BLAST results are available for this feature:

BLAST of CmoCh04G016640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIK0	4.3e-28	54.90	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
B6UFC7	2.9e-24	48.54	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Zea mays OX=4577 GN=PRIN2 ...	[more]
Q6H612	7.1e-23	39.18	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Oryza sativa subsp. japoni...	[more]

BLAST of CmoCh04G016640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYK9	3.6e-94	100.00	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 OS=Cucurbita ...	[more]
A0A6J1JDH3	6.8e-85	94.22	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 OS=Cucurbita ...	[more]
A0A5A7SZ04	6.0e-73	82.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BEK8	6.0e-73	82.29	uncharacterized protein LOC103489034 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1DB25	1.1e-63	76.92	protein PLASTID REDOX INSENSITIVE 2-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of CmoCh04G016640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956735.1	7.4e-94	100.00	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 [Cucurbita mo...	[more]
KAG6601371.1	4.2e-89	97.70	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrospe...	[more]
XP_023513727.1	1.5e-86	95.43	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X2 [Cucurbita pe...	[more]
XP_023513712.1	6.3e-85	93.82	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 [Cucurbita pe...	[more]
XP_022988602.1	1.4e-84	94.22	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 [Cucurbita ma...	[more]

BLAST of CmoCh04G016640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10522.1	3.1e-29	54.90	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G10522.2	3.1e-29	54.90	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039349	Protein PLASTID REDOX INSENSITIVE 2	PANTHER	PTHR35987	PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-RELATED	coord: 1..169
None	No IPR available	PANTHER	PTHR35987:SF3	PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-LIKE	coord: 1..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G016640.1	CmoCh04G016640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression