CmoCh04G016510 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G016510
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr04: 8417360 .. 8418726 (-)
RNA-Seq Expression	CmoCh04G016510
Synteny	CmoCh04G016510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGATACTCATGGCCATGCTTTGCTGTGTTTCTCTATTGATTCTCTCGGTACCTTTTGCTTCCTCGCATGCTCTTGACCAGTCTTCTCCCTTGCAAGGTGTGTATATTCAGTCATGTCTCTCTCCTTCTTCTACATTTTGTTCTTGTTCTTAATGGAGTTATTTGTGATCTTGCAGCAACTGAAGCAGTGCATTCTCCTCGTCTCGTTTTGTCAAGGAAGTTCAAAATGTTGGAAGAAGCGAAGGTTGGTTTGAGAATGCTTTTGAAATAAGTTATAAAAGAACATTACGAACATAATCGTAGAGCCGGTTTGGAATGATTTTTCGAATTCGTAAAAACATTTTTGAACTAAGTTTTTCATTGTTAATATCCAACTCTTCTAAACCATCTGGGCATTGTTCTATCTGTGTTCATTCTCTGCTGTTGAAGTTGTGATATACATCACTGATGATTTTCCTGGAAACAGGTTGTTGAAGCTCACGGATTCCAAGCTTCCAAACAAGAAGATGAGCAGAAGGAAACTGTTTCAGGTATGCAATTTCAAAGAAAGCCCAAAAGTATGCAAGTTCTTAAATAACTCATTCCTGTCATATCTGTAATCTTGCCAGTTCTTTGACTAAAAACTGCTGCAACATTGCTTCCTTGAAGATGGAAAATTTGTGGGCTTGCCATTTTTGAGTAACAATGCATTAAATAAATGTACTTTCTTTTTCACATTTTTGATACATATCTTCACTTTCAGATAATTTTCCTGCCATTTTTGTTCTCAAATCACTTCATGAATATCTTTTGTTTTGATTAGTTGGCCTTTTACTTTTACTTTAGCCATTCGTTCGTTGGTTCATCGTGTTGTCACATCAATAAGCGGTGTAATGAGTACATTTCAATTACCGTTCATCATGTTGTCATATCAATAAGCGGTCAGAGTTTGTAGATTGAATTTCTGCCTAAAATGAGTATATATCAATTATCGTTCATCGTGTTGTCACATCCTGGTTATGGATATTGATGATGTGAATATTTGGTAATATTTTTTAATGAATGCATTTGAGATATGGTATTAATTTAATCGTCATATTTACAGGTCAGGCTTATAAAAGGGAGGAAAACAAAGGGAAGGGGAGAAAGTGGGGGAATGTGGCCGACATGTCGTCGCGGTTTTTCACAATGGACTACGCTCACATAAAACGGCGCCGTCCCGTACATAACATGTCTCGCCAACGTCCTTGAAGTTATCTCAATTTCTAATCTAACCCCTTCATTTCTTTTCCTTTTCCAATTTTAACCCATGAAAATGAAGGATTTGCATTCTTAGCCCATATGTTATGGCCGACAAAATGGCAGACTAGTTTAGAGGCTTA

mRNA sequence

ATGGGTTTGATACTCATGGCCATGCTTTGCTGTGTTTCTCTATTGATTCTCTCGGTACCTTTTGCTTCCTCGCATGCTCTTGACCAGTCTTCTCCCTTGCAAGCAACTGAAGCAGTGCATTCTCCTCGTCTCGTTTTGTCAAGGAAGTTCAAAATGTTGGAAGAAGCGAAGGTTGTTGAAGCTCACGGATTCCAAGCTTCCAAACAAGAAGATGAGCAGAAGGAAACTGTTTCAGGTATGCAATTTCAAAGAAAGCCCAAAACCATTCGTTCGTTGGTTCATCGTGTTGTCACATCAATAAGCGGTGTAATGAGTCAGGCTTATAAAAGGGAGGAAAACAAAGGGAAGGGGAGAAAGTGGGGGAATGTGGCCGACATGTCGTCGCGGTTTTTCACAATGGACTACGCTCACATAAAACGGCGCCGTCCCGTACATAACATGTCTCGCCAACGTCCTTGAAGTTATCTCAATTTCTAATCTAACCCCTTCATTTCTTTTCCTTTTCCAATTTTAACCCATGAAAATGAAGGATTTGCATTCTTAGCCCATATGTTATGGCCGACAAAATGGCAGACTAGTTTAGAGGCTTA

Coding sequence (CDS)

ATGGGTTTGATACTCATGGCCATGCTTTGCTGTGTTTCTCTATTGATTCTCTCGGTACCTTTTGCTTCCTCGCATGCTCTTGACCAGTCTTCTCCCTTGCAAGCAACTGAAGCAGTGCATTCTCCTCGTCTCGTTTTGTCAAGGAAGTTCAAAATGTTGGAAGAAGCGAAGGTTGTTGAAGCTCACGGATTCCAAGCTTCCAAACAAGAAGATGAGCAGAAGGAAACTGTTTCAGGTATGCAATTTCAAAGAAAGCCCAAAACCATTCGTTCGTTGGTTCATCGTGTTGTCACATCAATAAGCGGTGTAATGAGTCAGGCTTATAAAAGGGAGGAAAACAAAGGGAAGGGGAGAAAGTGGGGGAATGTGGCCGACATGTCGTCGCGGTTTTTCACAATGGACTACGCTCACATAAAACGGCGCCGTCCCGTACATAACATGTCTCGCCAACGTCCTTGA

Protein sequence

MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVEAHGFQASKQEDEQKETVSGMQFQRKPKTIRSLVHRVVTSISGVMSQAYKREENKGKGRKWGNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP

Homology

[Close]

BLAST of CmoCh04G016510 vs. ExPASy TrEMBL
Match: A0A6J1GWC1 (uncharacterized protein LOC111458171 OS=Cucurbita moschata OX=3662 GN=LOC111458171 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.8e-56
Identity = 126/152 (82.89%), Postives = 126/152 (82.89%), Query Frame = 0


Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVE 60
           MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVE
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVE 60

Query: 61  AHGFQASKQEDEQKETVSGMQFQRKPKTIRSLVHRVVTSISGVMSQAYKREENKGKGRKW 120
           AHGFQASKQEDEQKETVSG                          QAYKREENKGKGRKW
Sbjct: 61  AHGFQASKQEDEQKETVSG--------------------------QAYKREENKGKGRKW 120

Query: 121 GNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP 153
           GNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP
Sbjct: 121 GNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP 126

[Close]

BLAST of CmoCh04G016510 vs. ExPASy TrEMBL
Match: A0A6J1IR14 (uncharacterized protein LOC111477668 OS=Cucurbita maxima OX=3661 GN=LOC111477668 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.6e-53
Identity = 121/152 (79.61%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVE 60
           MGLI MAMLCCVSLLILSVPFASSHALDQSSPLQ TEAVHSPRLVLSRKFKMLEEAKVVE
Sbjct: 1   MGLIFMAMLCCVSLLILSVPFASSHALDQSSPLQETEAVHSPRLVLSRKFKMLEEAKVVE 60

Query: 61  AHGFQASKQEDEQKETVSGMQFQRKPKTIRSLVHRVVTSISGVMSQAYKREENKGKGRKW 120
           AHGFQASKQEDEQKE VSG                          Q YKREENKGKGRKW
Sbjct: 61  AHGFQASKQEDEQKENVSG--------------------------QPYKREENKGKGRKW 120

Query: 121 GNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP 153
           GNVADMSSRF TMDYAHIKRRRPVHNMSRQRP
Sbjct: 121 GNVADMSSRFLTMDYAHIKRRRPVHNMSRQRP 126

[Close]

BLAST of CmoCh04G016510 vs. ExPASy TrEMBL
Match: A0A0A0KWA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606860 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.3e-35
Identity = 95/156 (60.90%), Postives = 107/156 (68.59%), Query Frame = 0


Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEA---- 60
           MGLI+MA+LCCVS+L+L +P ASSHALDQSSPLQATE VHSP LVL RKFKMLEEA    
Sbjct: 1   MGLIVMAILCCVSILVLLIPSASSHALDQSSPLQATEGVHSP-LVLGRKFKMLEEAARVD 60

Query: 61  KVVEAHGFQASKQEDEQKETVSGMQFQRKPKTIRSLVHRVVTSISGVMSQAYKREENKGK 120
           K VEA GFQ +KQ+D  KE VSG + Q                           + NKGK
Sbjct: 61  KKVEAQGFQVAKQKDNHKENVSGQEEQ-------------------------GTKLNKGK 120

Query: 121 GRKWGNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP 153
           GRKW  VADMSS+ FTMDYAH+KRRRPVHNMS +RP
Sbjct: 121 GRKWVKVADMSSQIFTMDYAHLKRRRPVHNMSLKRP 130

[Close]

BLAST of CmoCh04G016510 vs. ExPASy TrEMBL
Match: A0A5D3CCI7 (Putative root meristem growth factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00260 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.7e-34
Identity = 94/156 (60.26%), Postives = 104/156 (66.67%), Query Frame = 0


Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEA---- 60
           MGLI+MA+LCCVS+LIL +P ASSHALDQSSPLQATEAVHSPRLVL RKFKML+EA    
Sbjct: 1   MGLIVMAILCCVSILILLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLKEAARLD 60

Query: 61  KVVEAHGFQASKQEDEQKETVSGMQFQRKPKTIRSLVHRVVTSISGVMSQAYKREENKGK 120
           K VE  GFQ +KQ D  KE VSG                          +    + NK K
Sbjct: 61  KRVETQGFQVAKQNDNHKENVSG-------------------------EEEKGMKLNKRK 120

Query: 121 GRKWGNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP 153
           GRK  NVADMSS+ FTMDYAH+KRRRPVHNMS  RP
Sbjct: 121 GRKGVNVADMSSQIFTMDYAHLKRRRPVHNMSLNRP 131

[Close]

BLAST of CmoCh04G016510 vs. ExPASy TrEMBL
Match: A0A6J1D6T9 (uncharacterized protein LOC111017571 OS=Momordica charantia OX=3673 GN=LOC111017571 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.5e-27
Identity = 80/152 (52.63%), Postives = 99/152 (65.13%), Query Frame = 0


Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVE 60
           MGLI+MA LCCVSLLIL +P+ASSHAL+QS  LQATEAV   R   +RKF+++EEA  V+
Sbjct: 1   MGLIVMASLCCVSLLILLIPYASSHALEQSFHLQATEAV---RFRPTRKFRLMEEAGAVK 60

Query: 61  AHGFQASKQEDEQKETVSGMQFQRKPKTIRSLVHRVVTSISGVMSQAYKREENKGKGRKW 120
           AHG     Q D  ++ VSG  ++R+ K +                       ++ KGRKW
Sbjct: 61  AHGSPVPIQNDNHEDNVSGQPYKREQKGMNL---------------------SRRKGRKW 120

Query: 121 GNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP 153
            +V DMSSRFFTMDY H +RRRPVHNMSRQRP
Sbjct: 121 LDVDDMSSRFFTMDYVHTRRRRPVHNMSRQRP 128

[Close]

BLAST of CmoCh04G016510 vs. NCBI nr
Match: XP_022956442.1 (uncharacterized protein LOC111458171 [Cucurbita moschata] >KAG7032145.1 hypothetical protein SDJN02_06188 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-55
Identity = 126/152 (82.89%), Postives = 126/152 (82.89%), Query Frame = 0


Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVE 60
           MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVE
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVE 60

Query: 61  AHGFQASKQEDEQKETVSGMQFQRKPKTIRSLVHRVVTSISGVMSQAYKREENKGKGRKW 120
           AHGFQASKQEDEQKETVSG                          QAYKREENKGKGRKW
Sbjct: 61  AHGFQASKQEDEQKETVSG--------------------------QAYKREENKGKGRKW 120

Query: 121 GNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP 153
           GNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP
Sbjct: 121 GNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP 126

[Close]

BLAST of CmoCh04G016510 vs. NCBI nr
Match: XP_022977309.1 (uncharacterized protein LOC111477668 [Cucurbita maxima])

HSP 1 Score: 217.2 bits (552), Expect = 9.5e-53
Identity = 121/152 (79.61%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVE 60
           MGLI MAMLCCVSLLILSVPFASSHALDQSSPLQ TEAVHSPRLVLSRKFKMLEEAKVVE
Sbjct: 1   MGLIFMAMLCCVSLLILSVPFASSHALDQSSPLQETEAVHSPRLVLSRKFKMLEEAKVVE 60

Query: 61  AHGFQASKQEDEQKETVSGMQFQRKPKTIRSLVHRVVTSISGVMSQAYKREENKGKGRKW 120
           AHGFQASKQEDEQKE VSG                          Q YKREENKGKGRKW
Sbjct: 61  AHGFQASKQEDEQKENVSG--------------------------QPYKREENKGKGRKW 120

Query: 121 GNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP 153
           GNVADMSSRF TMDYAHIKRRRPVHNMSRQRP
Sbjct: 121 GNVADMSSRFLTMDYAHIKRRRPVHNMSRQRP 126

[Close]

BLAST of CmoCh04G016510 vs. NCBI nr
Match: XP_023525366.1 (uncharacterized protein LOC111788986 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-51
Identity = 122/153 (79.74%), Postives = 122/153 (79.74%), Query Frame = 0


Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATE-AVHSPRLVLSRKFKMLEEAKVV 60
           MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQ TE AVHSPRLVLSRKFKMLEEAKVV
Sbjct: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQVTEAAVHSPRLVLSRKFKMLEEAKVV 60

Query: 61  EAHGFQASKQEDEQKETVSGMQFQRKPKTIRSLVHRVVTSISGVMSQAYKREENKGKGRK 120
           EAHGFQASKQEDE KE VSG                          QAYKREENKGKGRK
Sbjct: 61  EAHGFQASKQEDELKENVSG--------------------------QAYKREENKGKGRK 120

Query: 121 WGNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP 153
           WGNV DMSSRFFTMDYAHIKRRRPVHNMSRQRP
Sbjct: 121 WGNVDDMSSRFFTMDYAHIKRRRPVHNMSRQRP 127

[Close]

BLAST of CmoCh04G016510 vs. NCBI nr
Match: KAG6601362.1 (hypothetical protein SDJN03_06595, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212.6 bits (540), Expect = 2.3e-51
Identity = 117/145 (80.69%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 8   MLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVEAHGFQAS 67
           MLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVEAH FQAS
Sbjct: 1   MLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKVVEAHRFQAS 60

Query: 68  KQEDEQKETVSGMQFQRKPKTIRSLVHRVVTSISGVMSQAYKREENKGKGRKWGNVADMS 127
           KQEDEQKETVSG                          QAYKREENKGKGRKWGN+ADMS
Sbjct: 61  KQEDEQKETVSG--------------------------QAYKREENKGKGRKWGNMADMS 119

Query: 128 SRFFTMDYAHIKRRRPVHNMSRQRP 153
           SRFFTMDYAHIKRRRPVHNMSRQRP
Sbjct: 121 SRFFTMDYAHIKRRRPVHNMSRQRP 119

[Close]

BLAST of CmoCh04G016510 vs. NCBI nr
Match: KAA0034486.1 (putative root meristem growth factor 8 [Cucumis melo var. makuwa] >TYK09040.1 putative root meristem growth factor 8 [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 7.6e-34
Identity = 94/156 (60.26%), Postives = 104/156 (66.67%), Query Frame = 0


Query: 1   MGLILMAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEA---- 60
           MGLI+MA+LCCVS+LIL +P ASSHALDQSSPLQATEAVHSPRLVL RKFKML+EA    
Sbjct: 1   MGLIVMAILCCVSILILLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLKEAARLD 60

Query: 61  KVVEAHGFQASKQEDEQKETVSGMQFQRKPKTIRSLVHRVVTSISGVMSQAYKREENKGK 120
           K VE  GFQ +KQ D  KE VSG                          +    + NK K
Sbjct: 61  KRVETQGFQVAKQNDNHKENVSG-------------------------EEEKGMKLNKRK 120

Query: 121 GRKWGNVADMSSRFFTMDYAHIKRRRPVHNMSRQRP 153
           GRK  NVADMSS+ FTMDYAH+KRRRPVHNMS  RP
Sbjct: 121 GRKGVNVADMSSQIFTMDYAHLKRRRPVHNMSLNRP 131

The following BLAST results are available for this feature:

BLAST of CmoCh04G016510 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G016510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GWC1	5.8e-56	82.89	uncharacterized protein LOC111458171 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]
A0A6J1IR14	4.6e-53	79.61	uncharacterized protein LOC111477668 OS=Cucurbita maxima OX=3661 GN=LOC111477668...	[more]
A0A0A0KWA1	4.3e-35	60.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606860 PE=4 SV=1	[more]
A0A5D3CCI7	3.7e-34	60.26	Putative root meristem growth factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1D6T9	1.5e-27	52.63	uncharacterized protein LOC111017571 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of CmoCh04G016510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956442.1	1.2e-55	82.89	uncharacterized protein LOC111458171 [Cucurbita moschata] >KAG7032145.1 hypothet...	[more]
XP_022977309.1	9.5e-53	79.61	uncharacterized protein LOC111477668 [Cucurbita maxima]	[more]
XP_023525366.1	1.1e-51	79.74	uncharacterized protein LOC111788986 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6601362.1	2.3e-51	80.69	hypothetical protein SDJN03_06595, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0034486.1	7.6e-34	60.26	putative root meristem growth factor 8 [Cucumis melo var. makuwa] >TYK09040.1 pu...	[more]

BLAST of CmoCh04G016510 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G016510.1	CmoCh04G016510.1	mRNA