CmoCh04G015840 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G015840
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionethylene-responsive transcription factor ERF118-like
LocationCmo_Chr04: 8084319 .. 8086638 (-)
RNA-Seq ExpressionCmoCh04G015840
SyntenyCmoCh04G015840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGGCGTAACAGCTGGAGGAGTGGGGTTCATGGTGCGACACGTGTCGAGAATTCTGTGGAAGACAAACGGTATAGGCGGAGATTTTGGTGGGAAGAATAAGGCGGAAGATTCCACGTCGGCGCTATGGGCGGGAAAAACGTAAGCCTGTTTGCGGTGGGCCCACTTTGTCGTTACGCGGAATTGATAATTCATGCATGGCATGCACATGATGAGGGGATGATGATGGTTGCTGGATGTGAAACATGGTCATTACTGGAATCTCACATGATGAGAGAGAACAATGGATTGCATTAATTATTCGTGTCGTGACTTTTCGGTGGATGTTAGTTGGGGCATTTTAGGTTCGGGTCGGGCATGGGTCGGATCTTTATTTTGCCAATATCAATACAGACATTATCACGTGCATCGTGTGGTCCTTTCTTTTTTTTTTTTGTTCATTTTTTCCCTATTTCTCACTTTTCATTCCGTACCCCTGTTCCCCTCTCTACTTTTTAAATGTAATACAAATTTATAAATATTTAAATTTTTTCATTTGGTACTTAACTTGAGCTTCTAAATCTTTAATAAGTTTTAATGTTAGTCTTCAATGGTAATTTTAAATTACTTTTTATGTTAAAAAAATAATATAAATGCTATATACTGTATTAACATTTCAAAAAAAGAAAAAAAAAGTTAATAATAAACTAACGGTAAGAACTCATTTTCAGCTTGATTAAAGTATATGTATAAATACTAAGTTGTAATTAATTAGTGTTTTATGTAATTCATTTAGAGAATCTAGTTGTGAGCGTTGAATACGATATCAATAATATTTAAGTTATATATTCTTTTTTATTGTTGGTACCAGAGTTGATGATTAAAATCTATCATTACAAAACCTATTGTTTTATTTAATAGGTTCATTGATTCTGATGATAGCGATAATAAATAAATATTTAAAAGGAGGCGGCTTGTGTTGGCATAATTAAAGGTGGAAGGAGGCATGCATGAATATCTTAATCTTCTTATTTTGTGGGGTTGTCATGTTAGGTGGATGATTTGGGCGTGCACAATTTACGTCTTTATGAGGGAGATCATCACGTGCTTCACTGCCTGAGTCTCCCATTAACTAAATATTGGTCATGTGCTAGTATCAAATCAATTTTTGTCCATGTTATGTTTACCATAATTCCATTTTCCAGAGTCGAATTCTTTTTTTAATTTAGACTATTTAAGCATTTACTTCCCAATTAAACTAAAATCTAATAATGTTTGAAGCTAAATCCGTTGGATTTAAAACACTCCCACCAATTATATATTTGAATAGATAATTTGACTAATGAGATAGACCAAGAAAGTTTCAATTGGATGGATGGATGGATGGATGGAATGGATGGATGGATGTGCATGAATCCGATGGGTATGCCATCCATCCATACCCATCATCAAAACATCTCTTTTTAAGCAAATTCCAACCTCATCATTCACTTCTGTAAAATTTGAACGCTCCTCGGAAGAATTGCAGGCGCCACCGACTGTGGAAATTCTTGGAACAACACGAAGAGACAGAAGTGGATCAGAGTAAGAAATTTCTTTATGATTTTCTTTCTTTTTATGTGTATTTTAATGTCGGGTTTTTCACGGAATGGGGGGTGGGTCGATTCGTTCTTCCATTGTTGTCACTGCTCACTGCTCACTCTTCATCTTTTTTAATCATATTTTTCGATTTCTGATATTTCCATAGAGATTTGCAGCACAATCGAGATCTCTCTTTATCTGTCTCTCTTCTGTTTCTCTAAAATCGAACAATGTTGGCCATGGATTGGCGATCTCTCTCGCTTTAATCTGCTGGTTTGTTTACTGTTTTTTCTCTTTCAACCTTTCAACAGCAGGGCTCAGACTTCTCTTCATCTGGGCTTGTGCTTTTTTTGAACTGGGAAAGAACTTGACGACGGTGGTTGAGCAGTAGATTTATGTCGGCTTTGTTCATATTGGCAGTGATTGGGGCTCTGTTGCAGCTCTGGTTTTCTTCTTCTTCTTCTTCTTCTGCTTCCTTCCTTCTCTGCTGGTTCCGGCAGAGGTTGATTCTGCTGCAACGATCATTTTCAATGCGTTTGAGATTAAAAAGGCAAGACAGATTTTCTAGTTTCATTCGCTTGTATATGTGTTTCCTAGAGGGTTTTCGGCCTAATTCCGATTTGGTTTTTTTCCATTGCAGGAGTTGTTCTGGAGTAAAGTTCTCTTGGGCTTATCGTATAAAACATTTTTTACTTCGTTTCTCCACCTTGCACTTTAGTTATTGGAATTCTCAGAGATCTTCCGCTGTTTCCCTTTGA

mRNA sequence

ATGCTAGGCGTAACAGCTGGAGGAGTGGGGTTCATGGTGCGACACGTGTCGAGAATTCTGTGGAAGACAAACGGTATAGGCGGAGATTTTGGTGGGAAGAATAAGGCGGAAGATTCCACGTCGGCGCTATGGGCGGGAAAAACGCGCCACCGACTGTGGAAATTCTTGGAACAACACGAAGAGACAGAAGTGGATCAGACAGGGCTCAGACTTCTCTTCATCTGGGCTTGTGCTTTTTTTGAACTGGGAAAGAACTTGACGACGCTCTGGTTTTCTTCTTCTTCTTCTTCTTCTGCTTCCTTCCTTCTCTGCTGGTTCCGGCAGAGGTTGATTCTGCTGCAACGATCATTTTCAATGCGTTTGAGATTAAAAAGGAGTTGTTCTGGAGTAAAGTTCTCTTGGGCTTATCGTATAAAACATTTTTTACTTCGTTTCTCCACCTTGCACTTTAGTTATTGGAATTCTCAGAGATCTTCCGCTGTTTCCCTTTGA

Coding sequence (CDS)

ATGCTAGGCGTAACAGCTGGAGGAGTGGGGTTCATGGTGCGACACGTGTCGAGAATTCTGTGGAAGACAAACGGTATAGGCGGAGATTTTGGTGGGAAGAATAAGGCGGAAGATTCCACGTCGGCGCTATGGGCGGGAAAAACGCGCCACCGACTGTGGAAATTCTTGGAACAACACGAAGAGACAGAAGTGGATCAGACAGGGCTCAGACTTCTCTTCATCTGGGCTTGTGCTTTTTTTGAACTGGGAAAGAACTTGACGACGCTCTGGTTTTCTTCTTCTTCTTCTTCTTCTGCTTCCTTCCTTCTCTGCTGGTTCCGGCAGAGGTTGATTCTGCTGCAACGATCATTTTCAATGCGTTTGAGATTAAAAAGGAGTTGTTCTGGAGTAAAGTTCTCTTGGGCTTATCGTATAAAACATTTTTTACTTCGTTTCTCCACCTTGCACTTTAGTTATTGGAATTCTCAGAGATCTTCCGCTGTTTCCCTTTGA

Protein sequence

MLGVTAGGVGFMVRHVSRILWKTNGIGGDFGGKNKAEDSTSALWAGKTRHRLWKFLEQHEETEVDQTGLRLLFIWACAFFELGKNLTTLWFSSSSSSSASFLLCWFRQRLILLQRSFSMRLRLKRSCSGVKFSWAYRIKHFLLRFSTLHFSYWNSQRSSAVSL
Homology
[Close]
BLAST of CmoCh04G015840 vs. ExPASy TrEMBL
Match: A0A6J1HT39 (ethylene-responsive transcription factor ERF118-like OS=Cucurbita maxima OX=3661 GN=LOC111467540 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-14
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 0 

Query: 86  LTTLWFSSSSSSSASFLLCWFRQRLILLQRSFSMRLRLKRSCSGVKFSWAYRIKHFLLRF 145
           L  LWF    SSSA F LC F QRLIL+Q+SFSM  R K +CSGVKFSW +RIK FLLRF
Sbjct: 13  LLQLWF----SSSAFFSLCCFWQRLILVQQSFSMLFRFKWTCSGVKFSWTFRIKQFLLRF 72

Query: 146 STLHFSYWNSQRSSAVSL 164
           STLHF  ++SQ+SS VS+
Sbjct: 73  STLHFRCFDSQKSSIVSV 86

[Close]
BLAST of CmoCh04G015840 vs. NCBI nr
Match: KAG6601296.1 (hypothetical protein SDJN03_06529, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 3.1e-17
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0 

Query: 1  MLGVTAGGVGFMVRHVSRILWKTNGIGGDFGGKNKAEDSTSALWAGKT 49
          MLGVTAG VGFMVRHVSRILWKTNGIGGDFGGKNKAEDSTSALWAGKT
Sbjct: 1  MLGVTAGRVGFMVRHVSRILWKTNGIGGDFGGKNKAEDSTSALWAGKT 48

[Close]
BLAST of CmoCh04G015840 vs. NCBI nr
Match: KAG6573970.1 (hypothetical protein SDJN03_27857, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 6.5e-15
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = 0 

Query: 86  LTTLWFSSSSSSSASFLLCWFRQRLILLQRSFSMRLRLKRSCSGVKFSWAYRIKHFLLRF 145
           L  LWF    SSS SF LCWF QRLIL+Q+SFSM  R KR+CSGVK SW  RIK FLLRF
Sbjct: 13  LLQLWF----SSSVSFSLCWFWQRLILVQQSFSMLFRFKRTCSGVKLSWTSRIKQFLLRF 72

Query: 146 STLHFSYWNSQRSSAVSL 164
           STLHF  ++S +SS VS+
Sbjct: 73  STLHFRCFDSLKSSIVSV 86

[Close]
BLAST of CmoCh04G015840 vs. NCBI nr
Match: XP_022968247.1 (ethylene-responsive transcription factor ERF118-like [Cucurbita maxima])

HSP 1 Score: 89.7 bits (221), Expect = 2.5e-14
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = 0 

Query: 86  LTTLWFSSSSSSSASFLLCWFRQRLILLQRSFSMRLRLKRSCSGVKFSWAYRIKHFLLRF 145
           L  LWF    SSSA F LC F QRLIL+Q+SFSM  R K +CSGVKFSW +RIK FLLRF
Sbjct: 13  LLQLWF----SSSAFFSLCCFWQRLILVQQSFSMLFRFKWTCSGVKFSWTFRIKQFLLRF 72

Query: 146 STLHFSYWNSQRSSAVSL 164
           STLHF  ++SQ+SS VS+
Sbjct: 73  STLHFRCFDSQKSSIVSV 86

The following BLAST results are available for this feature:
BLAST of CmoCh04G015840 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HT391.2e-1465.38ethylene-responsive transcription factor ERF118-like OS=Cucurbita maxima OX=3661... [more]
BLAST of CmoCh04G015840 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6601296.13.1e-1797.92hypothetical protein SDJN03_06529, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6573970.16.5e-1565.38hypothetical protein SDJN03_27857, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022968247.12.5e-1465.38ethylene-responsive transcription factor ERF118-like [Cucurbita maxima][more]
BLAST of CmoCh04G015840 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G015840.1CmoCh04G015840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050794 regulation of cellular process