CmoCh04G014700 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G014700
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	glycine-rich cell wall structural protein 2-like
Location	Cmo_Chr04: 7520812 .. 7521345 (+)
RNA-Seq Expression	CmoCh04G014700
Synteny	CmoCh04G014700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCACCGGGACTATCGGTTTGGTGCTCTTGGTTTTGTTAATGGCGGACTTAACTCTTGCTGCTAGATTCCTAAGGGGGTACGGAGGTGGTGGTGGGGGTGGTAGTGGTGGGGGTGGAGGTGGCGGAGAAGGTTCAAGACCTTGGTCAGGTTCGGGATATGGTTCGGGGTATGGCTCTGGGTATGGTTCGGGATATGGCGATGGTGGCTATCCTAGATATGGAGATGAAGGGTATGGGCCATATGGGCCATATGGGAGTGGTGGAGGTGGAGGGGGAGGAGGTGGTGGTGGGGGAGGAGGCGGCGGTGCAAATGGAGCCGGGTATGGTCACGGGTTTGGATCGGGAAGTGGGTCAGGGTATGGGTCTGGTGGCGGAGTAGGACGTGGCGGAGGAGGTGGTGGAGGAGGTGGCAGAGGTGGAGGAGGAGGAGGTGGCGGCGGAGGAGGCGGCGGGGGCGGAGAAGGAATGGGAGGAGGGTCCGGATATGGTTCGGGATATGGGTCGGGATATGGAGGAGGCGGGGATTAA

mRNA sequence

ATGGCTACCACCGGGACTATCGGTTTGGTGCTCTTGGTTTTGTTAATGGCGGACTTAACTCTTGCTGCTAGATTCCTAAGGGGGTACGGAGGTGGTGGTGGGGGTGGTAGTGGTGGGGGTGGAGGTGGCGGAGAAGGTTCAAGACCTTGGTCAGGTTCGGGATATGGTTCGGGGTATGGCTCTGGGTATGGTTCGGGATATGGCGATGGTGGCTATCCTAGATATGGAGATGAAGGGTATGGGCCATATGGGCCATATGGGAGTGGTGGAGGTGGAGGGGGAGGAGGTGGTGGTGGGGGAGGAGGCGGCGGTGCAAATGGAGCCGGGTATGGTCACGGGTTTGGATCGGGAAGTGGGTCAGGGTATGGGTCTGGTGGCGGAGTAGGACGTGGCGGAGGAGGTGGTGGAGGAGGTGGCAGAGGTGGAGGAGGAGGAGGTGGCGGCGGAGGAGGCGGCGGGGGCGGAGAAGGAATGGGAGGAGGGTCCGGATATGGTTCGGGATATGGGTCGGGATATGGAGGAGGCGGGGATTAA

Coding sequence (CDS)

ATGGCTACCACCGGGACTATCGGTTTGGTGCTCTTGGTTTTGTTAATGGCGGACTTAACTCTTGCTGCTAGATTCCTAAGGGGGTACGGAGGTGGTGGTGGGGGTGGTAGTGGTGGGGGTGGAGGTGGCGGAGAAGGTTCAAGACCTTGGTCAGGTTCGGGATATGGTTCGGGGTATGGCTCTGGGTATGGTTCGGGATATGGCGATGGTGGCTATCCTAGATATGGAGATGAAGGGTATGGGCCATATGGGCCATATGGGAGTGGTGGAGGTGGAGGGGGAGGAGGTGGTGGTGGGGGAGGAGGCGGCGGTGCAAATGGAGCCGGGTATGGTCACGGGTTTGGATCGGGAAGTGGGTCAGGGTATGGGTCTGGTGGCGGAGTAGGACGTGGCGGAGGAGGTGGTGGAGGAGGTGGCAGAGGTGGAGGAGGAGGAGGTGGCGGCGGAGGAGGCGGCGGGGGCGGAGAAGGAATGGGAGGAGGGTCCGGATATGGTTCGGGATATGGGTCGGGATATGGAGGAGGCGGGGATTAA

Protein sequence

MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYGSGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGSGYGSGGGVGRGGGGGGGGGRGGGGGGGGGGGGGGGEGMGGGSGYGSGYGSGYGGGGD

Homology

[Close]

BLAST of CmoCh04G014700 vs. ExPASy TrEMBL
Match: A0A6J1H1H1 (glycine-rich cell wall structural protein 1.0-like OS=Cucurbita moschata OX=3662 GN=LOC111458712 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.8e-45
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
           MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG
Sbjct: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60

Query: 61  SGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGS 120
           SGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGS
Sbjct: 61  SGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGS 120

Query: 121 GYGSGGGVGRGGGGGGGGGRG 142
           GYGSGGGVGRGGGGGGGGGRG
Sbjct: 121 GYGSGGGVGRGGGGGGGGGRG 141

[Close]

BLAST of CmoCh04G014700 vs. ExPASy TrEMBL
Match: A0A6J1JQB8 (putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111487374 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 7.3e-42
Identity = 170/211 (80.57%), Postives = 170/211 (80.57%), Query Frame = 0


Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
           MAT G IGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG
Sbjct: 1   MATNGAIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60

Query: 61  SGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGS 120
           SGYGSGYGDGGYPRYGDEG   YGPYGSGGGGGGGGGGGGGGG ANGAGYG GFGSGSGS
Sbjct: 61  SGYGSGYGDGGYPRYGDEG---YGPYGSGGGGGGGGGGGGGGGSANGAGYGQGFGSGSGS 120

Query: 121 GYGSGGGVGRGGGGGGGGGR----------------------------------GGGGGG 178
           GYGSGGGVGRGGGGGGGGGR                                  GGGGGG
Sbjct: 121 GYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGGG 180

[Close]

BLAST of CmoCh04G014700 vs. ExPASy TrEMBL
Match: A0A1S3BGF1 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489565 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.6e-28
Identity = 155/211 (73.46%), Postives = 158/211 (74.88%), Query Frame = 0


Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGS-RPWSGSGYGSGY 60
           MATT  +G V+LVLLM DL LAARF RGYGGGGGGGSGGGGGGGEGS  PW GSGYGSGY
Sbjct: 1   MATTKAVGFVVLVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGGPWPGSGYGSGY 60

Query: 61  GSGYGSGY-GDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGS 120
           GSGYGSGY G+ GY RYGDEGYGPYG Y SGGGGGGGGGGGGGGG A GA YG GFG G 
Sbjct: 61  GSGYGSGYGGEEGYSRYGDEGYGPYGRY-SGGGGGGGGGGGGGGGSAIGAEYGRGFGMGG 120

Query: 121 GSGYGSGGGVGRGGGGGG------------------------------GGGRGGGG--GG 178
           GSGYGSGGGVGRGGGGGG                              GGGRGGGG  GG
Sbjct: 121 GSGYGSGGGVGRGGGGGGGSGGGGGGGSGVGSGSGYGSGYGSGGGYGSGGGRGGGGGVGG 180

[Close]

BLAST of CmoCh04G014700 vs. ExPASy TrEMBL
Match: A0A0A0KUV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622440 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 8.6e-27
Identity = 151/202 (74.75%), Postives = 154/202 (76.24%), Query Frame = 0


Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
           MATT   GLV+LVLLM DL LAARF RGY    GGGSGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1   MATTKAAGLVILVLLMLDLALAARFFRGY----GGGSGGGGGGGEGSGPWSGSGYGSGYG 60

Query: 61  SGYGSGY-GDGGYPRYGDEG-YGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGS 120
           SGYGSGY G+ GY RYGDEG YGPYGPY SGGGGGGGGGGGGGGG A GA YG GFG+GS
Sbjct: 61  SGYGSGYGGEEGYSRYGDEGRYGPYGPY-SGGGGGGGGGGGGGGGSAIGAEYGRGFGAGS 120

Query: 121 GSGYGSGGGVGRGGGGGGGGGRGGGGGGG-----------------------GGGGGGGG 178
           GSGYGSGGGVGRGGGGGGG G GGGGG G                       GGGGGGGG
Sbjct: 121 GSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGGG 180

[Close]

BLAST of CmoCh04G014700 vs. ExPASy TrEMBL
Match: A0A6J1CF67 (putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111010186 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.2e-17
Identity = 132/175 (75.43%), Postives = 138/175 (78.86%), Query Frame = 0


Query: 2   ATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYGS 61
           ++T  IGLV+LVLLM DLTLAAR LRGY    GGG+GGGGGGGEG  P SGSGYGSGYGS
Sbjct: 4   SSTRAIGLVVLVLLMVDLTLAARSLRGY----GGGTGGGGGGGEGFGP-SGSGYGSGYGS 63

Query: 62  GYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGSG 121
           GYGSG+GD  Y  Y  E YGPYGPYGS GGGGGGGGGGGGGGGA GAGYG GF    GSG
Sbjct: 64  GYGSGFGDEAYEPY--EPYGPYGPYGS-GGGGGGGGGGGGGGGATGAGYGRGF----GSG 123

Query: 122 YGSGGGVGRGGGGGGGGGRGGGGGGGGGGGGGGGEGMGGGSGYGSGYGSGYGGGG 177
           YGSGGG+GRGGGGGGGGGRGGGGGGG G G G G G G GSG G G G G GGGG
Sbjct: 124 YGSGGGIGRGGGGGGGGGRGGGGGGGSGTGSGSGYGSGYGSGGGYGNGRGRGGGG 166

[Close]

BLAST of CmoCh04G014700 vs. NCBI nr
Match: KAG6601193.1 (hypothetical protein SDJN03_06426, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.0 bits (502), Expect = 7.0e-47
Identity = 176/211 (83.41%), Postives = 176/211 (83.41%), Query Frame = 0


Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
           MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG
Sbjct: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60

Query: 61  SGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGS 120
           SGYGSGYGDGGYPRYGDE YGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGS
Sbjct: 61  SGYGSGYGDGGYPRYGDEEYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGS 120

Query: 121 GYGSGGGVGRGGGGGGGGGR----------------------------------GGGGGG 178
           GYGSGGGVGRGGGGGGGGGR                                  GGGGGG
Sbjct: 121 GYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGNGGGRGGGGGGGG 180

[Close]

BLAST of CmoCh04G014700 vs. NCBI nr
Match: XP_022957274.1 (glycine-rich cell wall structural protein 1.0-like [Cucurbita moschata])

HSP 1 Score: 192.2 bits (487), Expect = 3.8e-45
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
           MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG
Sbjct: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60

Query: 61  SGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGS 120
           SGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGS
Sbjct: 61  SGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGS 120

Query: 121 GYGSGGGVGRGGGGGGGGGRG 142
           GYGSGGGVGRGGGGGGGGGRG
Sbjct: 121 GYGSGGGVGRGGGGGGGGGRG 141

[Close]

BLAST of CmoCh04G014700 vs. NCBI nr
Match: XP_023550088.1 (glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-41
Identity = 171/215 (79.53%), Postives = 171/215 (79.53%), Query Frame = 0


Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
           MATTG IGLVLLVLLMADLTLAARFLRGY    GGGSGGGGGGGEGSRPWSGSGYGSGYG
Sbjct: 1   MATTGAIGLVLLVLLMADLTLAARFLRGY----GGGSGGGGGGGEGSRPWSGSGYGSGYG 60

Query: 61  SGYGSGYGDGGYPRYGDEGYGPYGPYG----SGGGGGGGGGGGGGGGGANGAGYGHGFGS 120
           SGYGSGYGDGGYPRYGDEGYGPYGPYG     GGGGGGGGGGGGGGGGANGAGYGHGFGS
Sbjct: 61  SGYGSGYGDGGYPRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGGGANGAGYGHGFGS 120

Query: 121 GSGSGYGSGGGVGRGGGGGGGGGR----------------------------------GG 178
           GSGSGYGSGGGVGRGGGGGGGGGR                                  GG
Sbjct: 121 GSGSGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGNGGGRGGGG 180

[Close]

BLAST of CmoCh04G014700 vs. NCBI nr
Match: XP_022990525.1 (putative glycine-rich cell wall structural protein 1 [Cucurbita maxima])

HSP 1 Score: 180.3 bits (456), Expect = 1.5e-41
Identity = 170/211 (80.57%), Postives = 170/211 (80.57%), Query Frame = 0


Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
           MAT G IGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG
Sbjct: 1   MATNGAIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60

Query: 61  SGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGS 120
           SGYGSGYGDGGYPRYGDEG   YGPYGSGGGGGGGGGGGGGGG ANGAGYG GFGSGSGS
Sbjct: 61  SGYGSGYGDGGYPRYGDEG---YGPYGSGGGGGGGGGGGGGGGSANGAGYGQGFGSGSGS 120

Query: 121 GYGSGGGVGRGGGGGGGGGR----------------------------------GGGGGG 178
           GYGSGGGVGRGGGGGGGGGR                                  GGGGGG
Sbjct: 121 GYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGGG 180

[Close]

BLAST of CmoCh04G014700 vs. NCBI nr
Match: XP_038891650.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])

HSP 1 Score: 147.1 bits (370), Expect = 1.4e-31
Identity = 109/123 (88.62%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
           MATT  +GLVL VLLM D TLAARF RGYGGGGGGGSGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1   MATTRAVGLVLFVLLMVDFTLAARFFRGYGGGGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60

Query: 61  SGYGSGYGDGGYPRYGDEGYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSGS 120
           SGYGSGYGD GY RYGDEGYGPYG  G GGGGGGGGGGGGGGGGANGAGYG GFGSGSGS
Sbjct: 61  SGYGSGYGDDGYSRYGDEGYGPYG--GGGGGGGGGGGGGGGGGGANGAGYGRGFGSGSGS 120

Query: 121 GYG 124
           GYG
Sbjct: 121 GYG 121

The following BLAST results are available for this feature:

BLAST of CmoCh04G014700 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G014700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H1H1	1.8e-45	100.00	glycine-rich cell wall structural protein 1.0-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1JQB8	7.3e-42	80.57	putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661...	[more]
A0A1S3BGF1	1.6e-28	73.46	glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0KUV7	8.6e-27	74.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622440 PE=4 SV=1	[more]
A0A6J1CF67	6.2e-17	75.43	putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3...	[more]

BLAST of CmoCh04G014700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601193.1	7.0e-47	83.41	hypothetical protein SDJN03_06426, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022957274.1	3.8e-45	100.00	glycine-rich cell wall structural protein 1.0-like [Cucurbita moschata]	[more]
XP_023550088.1	1.1e-41	79.53	glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022990525.1	1.5e-41	80.57	putative glycine-rich cell wall structural protein 1 [Cucurbita maxima]	[more]
XP_038891650.1	1.4e-31	88.62	glycine-rich cell wall structural protein 2-like [Benincasa hispida]	[more]

BLAST of CmoCh04G014700 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 144..162 score: 45.39 coord: 91..106 score: 60.16 coord: 117..127 score: 32.95 coord: 31..42 score: 54.17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..156
None	No IPR available	PANTHER	PTHR37612:SF6	FIBROIN HEAVY CHAIN FIB-H LIKE PROTEIN	coord: 1..175
None	No IPR available	PANTHER	PTHR37612	FIBROIN HEAVY CHAIN FIB-H LIKE PROTEIN	coord: 1..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G014700.1	CmoCh04G014700.1	mRNA