CmoCh04G013960 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G013960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	auxin-regulated gene involved in organ size
Location	Cmo_Chr04: 7114467 .. 7114664 (+)
RNA-Seq Expression	CmoCh04G013960
Synteny	CmoCh04G013960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACGTTGCTTCAATTTAGTGTCCATTTTCGTCCTCGCCGCCGTTGCGGTCTCGATGGTAGTTCTGCCCTTGGTTCTTCCGCCGCTGCCTCCCCCTCCGATTGTGCTTCTCTTCTTTCCGGTTGGACTCATGGCGGCGCTCCTCATCCTCGCCTTTTCTCCCTCCGATGTCGGCGTCGATAATTTCGATTTATGA

mRNA sequence

ATGGTACGTTGCTTCAATTTAGTGTCCATTTTCGTCCTCGCCGCCGTTGCGGTCTCGATGGTAGTTCTGCCCTTGGTTCTTCCGCCGCTGCCTCCCCCTCCGATTGTGCTTCTCTTCTTTCCGGTTGGACTCATGGCGGCGCTCCTCATCCTCGCCTTTTCTCCCTCCGATGTCGGCGTCGATAATTTCGATTTATGA

Coding sequence (CDS)

ATGGTACGTTGCTTCAATTTAGTGTCCATTTTCGTCCTCGCCGCCGTTGCGGTCTCGATGGTAGTTCTGCCCTTGGTTCTTCCGCCGCTGCCTCCCCCTCCGATTGTGCTTCTCTTCTTTCCGGTTGGACTCATGGCGGCGCTCCTCATCCTCGCCTTTTCTCCCTCCGATGTCGGCGTCGATAATTTCGATTTATGA

Protein sequence

MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSDVGVDNFDL

Homology

[Close]

BLAST of CmoCh04G013960 vs. ExPASy Swiss-Prot
Match: Q6NMD6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3702 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-08
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 5   FNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSDVGVDNFD 64
           F+L S+F+L  +  S+++LPLVLPPLPPPP +LL  P+G+M  L++LAF PS     N D
Sbjct: 65  FSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPSSHSNANTD 124

Query: 65  L 66
           +
Sbjct: 125 V 125

[Close]

BLAST of CmoCh04G013960 vs. ExPASy Swiss-Prot
Match: C7SFP6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis OX=51351 GN=ARGOS PE=2 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-07
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 5   FNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPS 57
           F+L S+ +L  +  S+++LPLVLPPLPPPP +LL  P+G+M  L+ILAF PS
Sbjct: 72  FSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPS 123

[Close]

BLAST of CmoCh04G013960 vs. ExPASy Swiss-Prot
Match: Q8RXL7 (ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-07
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 5   FNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPS 57
           F+L S+ VL  +  S+++LPL+LPPLPPPP +LL  P+G+M  L++LAF PS
Sbjct: 71  FSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of CmoCh04G013960 vs. ExPASy Swiss-Prot
Match: Q7X6L2 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica OX=39947 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-05
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 5   FNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPS 57
           F++ S+ +L  V  S+V+LPLVLPPLPPPP +L+  PV ++  LL LAF P+
Sbjct: 100 FSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPT 151

[Close]

BLAST of CmoCh04G013960 vs. ExPASy TrEMBL
Match: A0A0L9UI81 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g004200 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1   MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
           MVRCF+L S+ +LAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 157

[Close]

BLAST of CmoCh04G013960 vs. ExPASy TrEMBL
Match: A0A0S3SKI1 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G232000 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1   MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
           MVRCF+L S+ +LAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 157

[Close]

BLAST of CmoCh04G013960 vs. ExPASy TrEMBL
Match: V7BSD6 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G025500g PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
          MVRCF+L S+ +LAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 1  MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 57

[Close]

BLAST of CmoCh04G013960 vs. ExPASy TrEMBL
Match: K7K5P8 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_11G156100 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.4e-13
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
          M RCF L S+ VLAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 1  MARCFGLGSVLVLAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 57

[Close]

BLAST of CmoCh04G013960 vs. ExPASy TrEMBL
Match: A0A445I3P0 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_030376 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.4e-13
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
           M RCF L S+ VLAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 86  MARCFGLGSVLVLAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 142

[Close]

BLAST of CmoCh04G013960 vs. NCBI nr
Match: KAG6601123.1 (Transcription factor IIIA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1   MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSDVGV 60
           MVRCFNLVSIFVLAAVAVSMVVL LVLPPLPPPPIVLLFFPVGLMAALLILAFSPSDVGV
Sbjct: 321 MVRCFNLVSIFVLAAVAVSMVVLRLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSDVGV 380

Query: 61  DNFDL 66
           DNFDL
Sbjct: 381 DNFDL 385

[Close]

BLAST of CmoCh04G013960 vs. NCBI nr
Match: XP_007148923.1 (hypothetical protein PHAVU_005G025500g [Phaseolus vulgaris] >ESW20917.1 hypothetical protein PHAVU_005G025500g [Phaseolus vulgaris])

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
          MVRCF+L S+ +LAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 1  MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 57

[Close]

BLAST of CmoCh04G013960 vs. NCBI nr
Match: KAG2372512.1 (uncharacterized protein HKW66_Vig0206190 [Vigna angularis] >KOM42438.1 hypothetical protein LR48_Vigan05g004200 [Vigna angularis] >BAT93370.1 hypothetical protein VIGAN_07232000 [Vigna angularis var. angularis])

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1   MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
           MVRCF+L S+ +LAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 157

[Close]

BLAST of CmoCh04G013960 vs. NCBI nr
Match: RZB80655.1 (hypothetical protein D0Y65_030376 [Glycine soja])

HSP 1 Score: 83.6 bits (205), Expect = 7.0e-13
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
           M RCF L S+ VLAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 86  MARCFGLGSVLVLAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 142

[Close]

BLAST of CmoCh04G013960 vs. NCBI nr
Match: KAG4989130.1 (hypothetical protein JHK85_032113 [Glycine max] >KAG4994720.1 hypothetical protein JHK86_031547 [Glycine max] >KAG5124717.1 hypothetical protein JHK82_031454 [Glycine max] >KAG5146138.1 hypothetical protein JHK84_031681 [Glycine max] >KRH30067.1 hypothetical protein GLYMA_11G156100v4 [Glycine max])

HSP 1 Score: 83.6 bits (205), Expect = 7.0e-13
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MVRCFNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
          M RCF L S+ VLAA+A SMVVLPL+LPPLPPPP+VLLFFPVG+MAAL++LAFSPSD
Sbjct: 1  MARCFGLGSVLVLAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 57

[Close]

BLAST of CmoCh04G013960 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-09
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 5   FNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSDVGVDNFD 64
           F+L S+F+L  +  S+++LPLVLPPLPPPP +LL  P+G+M  L++LAF PS     N D
Sbjct: 65  FSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPSSHSNANTD 124

Query: 65  L 66
           +
Sbjct: 125 V 125

[Close]

BLAST of CmoCh04G013960 vs. TAIR 10
Match: AT2G44080.1 (ARGOS-like )

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-08
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 5   FNLVSIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPS 57
           F+L S+ VL  +  S+++LPL+LPPLPPPP +LL  P+G+M  L++LAF PS
Sbjct: 71  FSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of CmoCh04G013960 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 2.2e-04
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 9  SIFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSD 58
          S+ +L  +++ +++LP  LPPLPPPP  LL  P+ LM  L+ LAFSPS+
Sbjct: 29 SVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSN 77

[Close]

BLAST of CmoCh04G013960 vs. TAIR 10
Match: AT2G41225.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.0 bits (92), Expect = 8.3e-04
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 10 IFVLAAVAVSMVVLPLVLPPLPPPPIVLLFFPVGLMAALLILA 53
          +FV+  V V + VLP VLPPLPPPP++L+  PV LM  L+ LA
Sbjct: 1  MFVIGVVMVLLAVLPAVLPPLPPPPMILMGIPVVLMLMLIYLA 43

The following BLAST results are available for this feature:

BLAST of CmoCh04G013960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NMD6	2.4e-08	50.82	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3...	[more]
C7SFP6	1.6e-07	55.77	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
Q8RXL7	2.1e-07	53.85	ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1	[more]
Q7X6L2	1.1e-05	51.92	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]

BLAST of CmoCh04G013960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0L9UI81	1.2e-13	78.95	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g004200 PE...	[more]
A0A0S3SKI1	1.2e-13	78.95	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G...	[more]
V7BSD6	1.2e-13	78.95	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G025500g PE=4 ...	[more]
K7K5P8	3.4e-13	78.95	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_11G156100 PE=4 SV=1	[more]
A0A445I3P0	3.4e-13	78.95	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_030376 PE=4 SV=1	[more]

BLAST of CmoCh04G013960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601123.1	1.4e-21	98.46	Transcription factor IIIA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_007148923.1	2.4e-13	78.95	hypothetical protein PHAVU_005G025500g [Phaseolus vulgaris] >ESW20917.1 hypothet...	[more]
KAG2372512.1	2.4e-13	78.95	uncharacterized protein HKW66_Vig0206190 [Vigna angularis] >KOM42438.1 hypotheti...	[more]
RZB80655.1	7.0e-13	78.95	hypothetical protein D0Y65_030376 [Glycine soja]	[more]
KAG4989130.1	7.0e-13	78.95	hypothetical protein JHK85_032113 [Glycine max] >KAG4994720.1 hypothetical prote...	[more]

BLAST of CmoCh04G013960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59900.1	1.7e-09	50.82	auxin-regulated gene involved in organ size	[more]
AT2G44080.1	1.5e-08	53.85	ARGOS-like	[more]
AT2G41230.1	2.2e-04	48.98	unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact...	[more]
AT2G41225.1	8.3e-04	55.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38928:SF5	PROTEIN, PUTATIVE-RELATED	coord: 1..58
None	No IPR available	PANTHER	PTHR38928	ARGOS7	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G013960.1	CmoCh04G013960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane