CmoCh04G012150 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G012150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SHSP domain-containing protein
Location	Cmo_Chr04: 6171138 .. 6171668 (+)
RNA-Seq Expression	CmoCh04G012150
Synteny	CmoCh04G012150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATGCTCCTGACTTCTGGCTTCTTCACTTCCATTTTGGGCACCGTCACCGTCAGCACCCCATTCTCCATGTTGGCCTTCACCTCTTCTACTTTCGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTCCCACTGCTTCTTTCAATTCTATGCCACTTGTCGTTCTTCTCCTCCTGCTCTTTGCTTCTCTCTCCGCTGATCTGCAGAACTCCCCCTTCTTCANNNTGCAGAACTCCCCCTTCTTCAATTTCAACCTTCACTTCCTCCTTTTTGATCCCCGGAAGATCCGCCTTCAACACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATGCGGGTGTTGGCAAAAGCAGAGGAGGAGGGGACGTTGGCCAGAGAGCTTGAAAATGGTAAGCCTTCGAAAGGATCCCAAACGTCTAAGGAGAAGGGATCGAAGACGTTGCTCCGGCGCCCACCAAAAATGCTTGGAATCAACGCCATCGTCGTTGTTGGTGAATTAGATAGTAGAATCGCTGAAAGTGATACTTGA

mRNA sequence

ATGTCAATGCTCCTGACTTCTGGCTTCTTCACTTCCATTTTGGGCACCGTCACCGTCAGCACCCCATTCTCCATGTTGGCCTTCACCTCTTCTACTTTCGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTCCCACTGCTTCTTTCAATTCTATGCCACTTGTCATCCGCCTTCAACACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATGCGGGTGTTGGCAAAAGCAGAGGAGGAGGGGACGTTGGCCAGAGAGCTTGAAAATGGTAAGCCTTCGAAAGGATCCCAAACGTCTAAGGAGAAGGGATCGAAGACGTTGCTCCGGCGCCCACCAAAAATGCTTGGAATCAACGCCATCGTCGTTGTTGGTGAATTAGATAGTAGAATCGCTGAAAGTGATACTTGA

Coding sequence (CDS)

ATGTCAATGCTCCTGACTTCTGGCTTCTTCACTTCCATTTTGGGCACCGTCACCGTCAGCACCCCATTCTCCATGTTGGCCTTCACCTCTTCTACTTTCGCATTCTCCGGCAGCCTGAATCTCCTCATGAACTTCCCACTGCTTCTTTCAATTCTATGCCACTTGTCATCCGCCTTCAACACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATGCGGGTGTTGGCAAAAGCAGAGGAGGAGGGGACGTTGGCCAGAGAGCTTGAAAATGGTAAGCCTTCGAAAGGATCCCAAACGTCTAAGGAGAAGGGATCGAAGACGTTGCTCCGGCGCCCACCAAAAATGCTTGGAATCAACGCCATCGTCGTTGTTGGTGAATTAGATAGTAGAATCGCTGAAAGTGATACTTGA

Protein sequence

MSMLLTSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHLSSAFNTWASGVSFQSMRVLAKAEEEGTLARELENGKPSKGSQTSKEKGSKTLLRRPPKMLGINAIVVVGELDSRIAESDT

Homology

[Close]

BLAST of CmoCh04G012150 vs. ExPASy TrEMBL
Match: A0A0A0KSC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.7e-36
Identity = 102/163 (62.58%), Postives = 107/163 (65.64%), Query Frame = 0


Query: 1   MSMLLTSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHLS---- 60
           MSM L SGFF+SILGT+TV TPFSMLAFTSST AFSGSLNLLMNFP L SILCHLS    
Sbjct: 1   MSMDLISGFFSSILGTITVRTPFSMLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSS 60

Query: 61  -----------------------------SAFNTWASGVSFQSMRVLAKAE----EEGTL 120
                                        SA   WA GVSFQSMRVLAKAE    EEG L
Sbjct: 61  CSLLLSPLICKTLPSSTSTLTSSFLIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGAL 120

Query: 121 ARELENGKPSKGSQTSKEKGSKTLLRRPPKMLGINAIVVVGEL 127
           A+E E GKPSKGSQ S EKGSKTLLRRPPKMLG  A+VV  E+
Sbjct: 121 AKEFEKGKPSKGSQMSNEKGSKTLLRRPPKMLGTRAMVVEFEV 163

[Close]

BLAST of CmoCh04G012150 vs. ExPASy TrEMBL
Match: A0A484M1B1 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 7.0e-21
Identity = 79/153 (51.63%), Postives = 84/153 (54.90%), Query Frame = 0


Query: 3   MLLTSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHLS------ 62
           M LTSGFFTS LGTVTVSTPFSM AFT S FAFSGS N   N PLL S  CHLS      
Sbjct: 1   MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60

Query: 63  ---------------------------SAFNTWASGVSFQSMRVLAKAEEEGTLARELEN 122
                                      SA NTW SGVSFQS+R  A A+    +    EN
Sbjct: 61  LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVSLGVLTAFEN 120

[Close]

BLAST of CmoCh04G012150 vs. ExPASy TrEMBL
Match: A0A103YMN4 (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_009654 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.3e-18
Identity = 72/147 (48.98%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 6   TSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHLS--------- 65
           T+GFFTS  GTV VSTPFS+ AFT S FAFSG+LNLL+NFPLL S LCH+S         
Sbjct: 152 TTGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFL 211

Query: 66  ------------------------SAFNTWASGVSFQSMRVLAKAEE--EGTLARELENG 118
                                   SA  T ASGVSFQS RV  KAE   + +   E+  G
Sbjct: 212 SPLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQESDPDEVGKG 271

[Close]

BLAST of CmoCh04G012150 vs. ExPASy TrEMBL
Match: A0A7C9D9Y3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.3e-18
Identity = 73/157 (46.50%), Postives = 83/157 (52.87%), Query Frame = 0


Query: 3   MLLTSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHLS------ 62
           M+ TSGFF+S LGTVTVSTPFS+ AFTSS  AFSG  N   N PL  S  CHLS      
Sbjct: 1   MVFTSGFFSSTLGTVTVSTPFSIAAFTSSILAFSGRRNRRRNLPLARSTRCHLSFFSSCS 60

Query: 63  ---------------------------SAFNTWASGVSFQSMRVL-----AKAEEEGTLA 122
                                      S  NTWASGVSFQS  VL     ++A E G   
Sbjct: 61  LVLSPLIWRILPSSTSTFTSSFLTPGRSTLNTWASGVSFQSTLVLTNCDVSRAAELGCTL 120

[Close]

BLAST of CmoCh04G012150 vs. ExPASy TrEMBL
Match: A0A0D9Z548 (SHSP domain-containing protein OS=Oryza glumipatula OX=40148 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-17
Identity = 74/139 (53.24%), Postives = 81/139 (58.27%), Query Frame = 0


Query: 3   MLLTSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHL--SSAFN 62
           M LTSGF  S LGTVTVSTPFSM A   S   FSGS NL  N PLL S  CH   +SA N
Sbjct: 1   MDLTSGFLGSSLGTVTVSTPFSMDALICSGLVFSGSRNLRRNLPLLRSTRCHFPGTSALN 60

Query: 63  TWASGVSFQSMRVLAKAEEEGTLARELE------------NGKPSKGSQTSKEKGSKTLL 122
           T ASGVSFQSMR  AKA     + R  +             GKPSKGSQ S+EKGS  LL
Sbjct: 61  TCASGVSFQSMRAPAKAAVSEEVPRGKDGKMLPLLLLPEPKGKPSKGSQRSREKGSNMLL 120

Query: 123 RRPPKMLGINAIVVVGELD 128
           RR   ++GI A + V   D
Sbjct: 121 RRIIDIVGIAANLEVERSD 139

[Close]

BLAST of CmoCh04G012150 vs. NCBI nr
Match: VFQ82571.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-20
Identity = 79/153 (51.63%), Postives = 84/153 (54.90%), Query Frame = 0


Query: 3   MLLTSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHLS------ 62
           M LTSGFFTS LGTVTVSTPFSM AFT S FAFSGS N   N PLL S  CHLS      
Sbjct: 1   MDLTSGFFTSSLGTVTVSTPFSMDAFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFS 60

Query: 63  ---------------------------SAFNTWASGVSFQSMRVLAKAEEEGTLARELEN 122
                                      SA NTW SGVSFQS+R  A A+    +    EN
Sbjct: 61  LLLSPLICKILPSSTSTFTSSFFSPGRSALNTWLSGVSFQSIRAFANADVSLGVLTAFEN 120

[Close]

BLAST of CmoCh04G012150 vs. NCBI nr
Match: KVI11914.1 (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 101.3 bits (251), Expect = 6.8e-18
Identity = 72/147 (48.98%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 6   TSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHLS--------- 65
           T+GFFTS  GTV VSTPFS+ AFT S FAFSG+LNLL+NFPLL S LCH+S         
Sbjct: 152 TTGFFTSSFGTVIVSTPFSIEAFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFL 211

Query: 66  ------------------------SAFNTWASGVSFQSMRVLAKAEE--EGTLARELENG 118
                                   SA  T ASGVSFQS RV  KAE   + +   E+  G
Sbjct: 212 SPLICKILSSSTSTFTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQESDPDEVGKG 271

[Close]

BLAST of CmoCh04G012150 vs. NCBI nr
Match: KAG6600961.1 (18.5 kDa class I heat shock protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 7.5e-17
Identity = 54/68 (79.41%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 57  SAFNTWASGVSFQSMRVLAKAE----EEGTLARELENGKPSKGSQTSKEKGSKTLLRRPP 116
           SA   WASGVSFQSMRVLAKAE    EEG LA E+ENGKPSKGSQTS EKGSK LLRRPP
Sbjct: 178 SALKMWASGVSFQSMRVLAKAEVSRAEEGALADEVENGKPSKGSQTSNEKGSKMLLRRPP 237

Query: 117 KMLGINAI 121
           KMLGI A+
Sbjct: 238 KMLGIRAM 245

[Close]

BLAST of CmoCh04G012150 vs. NCBI nr
Match: BAS70261.1 (Os01g0136050, partial [Oryza sativa Japonica Group])

HSP 1 Score: 95.5 bits (236), Expect = 3.7e-16
Identity = 76/154 (49.35%), Postives = 82/154 (53.25%), Query Frame = 0


Query: 1   MSMLLTSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHLS---- 60
           +SM  TSGF TS LGTVTVSTPFSMLAFT ST AFSGSLN  MN PLL S  CHLS    
Sbjct: 20  ISMAFTSGFLTSALGTVTVSTPFSMLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSS 79

Query: 61  -----------------------------SAFNTWASGVSFQSMRVLAKAE-EEGTLARE 120
                                        SA  T  SGVSFQS R LAKA      +A  
Sbjct: 80  FSLLRCPLITSTLPSSTSTFTSSFLTPGRSALKTCDSGVSFQSTRALAKAAVSRSEVAGT 139

[Close]

BLAST of CmoCh04G012150 vs. NCBI nr
Match: CAG1834096.1 (unnamed protein product [Musa acuminata subsp. malaccensis])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 74/157 (47.13%), Postives = 82/157 (52.23%), Query Frame = 0


Query: 3   MLLTSGFFTSILGTVTVSTPFSMLAFTSSTFAFSGSLNLLMNFPLLLSILCHLS------ 62
           M LTSGF T  LGTVTVSTPFSM AFT ST AFSG  NL  N PLL S  C +S      
Sbjct: 1   MDLTSGFLTPSLGTVTVSTPFSMAAFTCSTLAFSGRRNLRRNLPLLRSTRCQVSVFSSCS 60

Query: 63  ---------------------------SAFNTWASGVSFQSMRVLAKAE-EEGTLA---- 122
                                      SA NT ASGVSFQS R  A A+   GT+A    
Sbjct: 61  RLRSPLIRRTRPSSTSTMTSSFLSPGKSALNTCASGVSFQSTRAAAMADASPGTVAGEKE 120

The following BLAST results are available for this feature:

BLAST of CmoCh04G012150 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G012150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSC0	7.7e-36	62.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1	[more]
A0A484M1B1	7.0e-21	51.63	Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 ...	[more]
A0A103YMN4	3.3e-18	48.98	Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 ...	[more]
A0A7C9D9Y3	3.3e-18	46.50	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]
A0A0D9Z548	1.6e-17	53.24	SHSP domain-containing protein OS=Oryza glumipatula OX=40148 PE=3 SV=1	[more]

BLAST of CmoCh04G012150 vs. NCBI nr


Match Name	E-value	Identity	Description
VFQ82571.1	1.5e-20	51.63	unnamed protein product [Cuscuta campestris]	[more]
KVI11914.1	6.8e-18	48.98	hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus]	[more]
KAG6600961.1	7.5e-17	79.41	18.5 kDa class I heat shock protein, partial [Cucurbita argyrosperma subsp. soro...	[more]
BAS70261.1	3.7e-16	49.35	Os01g0136050, partial [Oryza sativa Japonica Group]	[more]
CAG1834096.1	1.1e-15	47.13	unnamed protein product [Musa acuminata subsp. malaccensis]	[more]

BLAST of CmoCh04G012150 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G012150.1	CmoCh04G012150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane