CmoCh04G010050 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G010050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	YL1_C domain-containing protein
Location	Cmo_Chr04: 5067527 .. 5067733 (+)
RNA-Seq Expression	CmoCh04G010050
Synteny	CmoCh04G010050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGCAAAACGCAAAAATCTAGGGCTGCGTTGATGAATCTATCGCCCTGCGATGTTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGGGATCGCATTAAGTGCGAGTCTCAAATACAAGCCTTCAAGTTGTCTTGCTCCCTGAAGAAACCAAATCCATCCTTGCAATCGGTAAGAGACGGCCTCGAGACTGGTGTTTGA

mRNA sequence

ATGGACGGCAAAACGCAAAAATCTAGGGCTGCGTTGATGAATCTATCGCCCTGCGATGTTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGGGATCGCATTAAGTGCGAGTCTCAAATACAAGCCTTCAAGTTGTCTTGCTCCCTGAAGAAACCAAATCCATCCTTGCAATCGGTAAGAGACGGCCTCGAGACTGGTGTTTGA

Coding sequence (CDS)

ATGGACGGCAAAACGCAAAAATCTAGGGCTGCGTTGATGAATCTATCGCCCTGCGATGTTGAAGCTCTCAGGAAATGTTTGCAGGAAAACAATGGGGATCGCATTAAGTGCGAGTCTCAAATACAAGCCTTCAAGTTGTCTTGCTCCCTGAAGAAACCAAATCCATCCTTGCAATCGGTAAGAGACGGCCTCGAGACTGGTGTTTGA

Protein sequence

MDGKTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQSVRDGLETGV

Homology

[Close]

BLAST of CmoCh04G010050 vs. ExPASy TrEMBL
Match: A0A0A0L2G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081365 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.9e-21
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MDGKTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQSV 60
          MDG T+KSRA   N SPCDVEAL+KCLQENNGDR+KCESQIQAF  SCSLKK NPSLQS 
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RDGLETGV 69
          R+  +TGV
Sbjct: 61 RNDFDTGV 68

[Close]

BLAST of CmoCh04G010050 vs. ExPASy TrEMBL
Match: A0A2C9VSE9 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G149600 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 3  GKTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          G+  +S  A   +SPCDVEAL+KCL+EN GD +KC+SQI+AFK SCSLKKP+ SLQS
Sbjct: 2  GEKAESSGAKKVMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPSSSLQS 58

[Close]

BLAST of CmoCh04G010050 vs. ExPASy TrEMBL
Match: B9RIW7 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1583260 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.9e-12
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1  MDGKTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          MD K + S A  + LSPCDVEAL+KCL+EN GD +KC+SQI+AFK SCSLKKP PS+ +
Sbjct: 1  MDEKGESSSAKKV-LSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPTPSMDT 58

[Close]

BLAST of CmoCh04G010050 vs. ExPASy TrEMBL
Match: A0A5N6RFC3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.9e-12
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 7  KSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          +S +A   +SPCDVEAL+KCL+ENNGD +KC+SQI+AFK SCSLKKPN S +S
Sbjct: 6  ESNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPNSSQES 58

[Close]

BLAST of CmoCh04G010050 vs. ExPASy TrEMBL
Match: A0A5N6RHF1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.9e-12
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 7  KSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          +S +A   +SPCDVEAL+KCL+ENNGD +KC+SQI+AFK SCSLKKPN S +S
Sbjct: 6  ESNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPNSSQES 58

[Close]

BLAST of CmoCh04G010050 vs. NCBI nr
Match: KAE8650146.1 (hypothetical protein Csa_010997, partial [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-19
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 1  MDGKTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQSV 60
          MDG T+KSRA   N SPCDVEAL+KCLQENNGDR+KCESQIQAF  SCSLKK NPSLQS 
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RDGLET 67
          R+  +T
Sbjct: 61 RNDFDT 66

[Close]

BLAST of CmoCh04G010050 vs. NCBI nr
Match: KAF3954648.1 (hypothetical protein CMV_020027 [Castanea mollissima] >KAF3976702.1 hypothetical protein CMV_000104 [Castanea mollissima])

HSP 1 Score: 80.5 bits (197), Expect = 6.2e-12
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1  MDGKTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS- 60
          MD K + S      +SPCDVEAL+KCL+EN GD +KC+SQI+AFK SCS+KKPNPS +S 
Sbjct: 1  MDQKAE-SNTVKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSIKKPNPSQESA 60

Query: 61 --VRDGLET 67
            +  GL T
Sbjct: 61 PPLNSGLRT 68

[Close]

BLAST of CmoCh04G010050 vs. NCBI nr
Match: OAY48318.1 (hypothetical protein MANES_06G149600v8 [Manihot esculenta])

HSP 1 Score: 80.5 bits (197), Expect = 6.2e-12
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 3  GKTQKSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          G+  +S  A   +SPCDVEAL+KCL+EN GD +KC+SQI+AFK SCSLKKP+ SLQS
Sbjct: 2  GEKAESSGAKKVMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPSSSLQS 58

[Close]

BLAST of CmoCh04G010050 vs. NCBI nr
Match: KAE8077725.1 (hypothetical protein FH972_016259 [Carpinus fangiana])

HSP 1 Score: 80.1 bits (196), Expect = 8.1e-12
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 7  KSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          +S +A   +SPCDVEAL+KCL+ENNGD +KC+SQI+AFK SCSLKKPN S +S
Sbjct: 6  ESNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPNSSQES 58

[Close]

BLAST of CmoCh04G010050 vs. NCBI nr
Match: KAE8077726.1 (hypothetical protein FH972_016259 [Carpinus fangiana])

HSP 1 Score: 80.1 bits (196), Expect = 8.1e-12
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 7  KSRAALMNLSPCDVEALRKCLQENNGDRIKCESQIQAFKLSCSLKKPNPSLQS 60
          +S +A   +SPCDVEAL+KCL+ENNGD +KC+SQI+AFK SCSLKKPN S +S
Sbjct: 6  ESNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPNSSQES 58

The following BLAST results are available for this feature:

BLAST of CmoCh04G010050 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G010050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2G8	7.9e-21	76.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081365 PE=4 SV=1	[more]
A0A2C9VSE9	3.0e-12	64.91	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G149600 PE=4 SV=...	[more]
B9RIW7	3.9e-12	64.41	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1583260 PE=4 SV=1	[more]
A0A5N6RFC3	3.9e-12	67.92	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1	[more]
A0A5N6RHF1	3.9e-12	67.92	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1	[more]

BLAST of CmoCh04G010050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650146.1	3.1e-19	75.76	hypothetical protein Csa_010997, partial [Cucumis sativus]	[more]
KAF3954648.1	6.2e-12	57.97	hypothetical protein CMV_020027 [Castanea mollissima] >KAF3976702.1 hypothetical...	[more]
OAY48318.1	6.2e-12	64.91	hypothetical protein MANES_06G149600v8 [Manihot esculenta]	[more]
KAE8077725.1	8.1e-12	67.92	hypothetical protein FH972_016259 [Carpinus fangiana]	[more]
KAE8077726.1	8.1e-12	67.92	hypothetical protein FH972_016259 [Carpinus fangiana]	[more]

BLAST of CmoCh04G010050 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36856	OS07G0175200 PROTEIN	coord: 1..66
None	No IPR available	PANTHER	PTHR36856:SF1	OS07G0175200 PROTEIN	coord: 1..66
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 16..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G010050.1	CmoCh04G010050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0019787	ubiquitin-like protein transferase activity