CmoCh04G009890 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G009890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Wound-responsive family protein
Location	Cmo_Chr04: 4988320 .. 4988592 (-)
RNA-Seq Expression	CmoCh04G009890
Synteny	CmoCh04G009890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAGAGCGCAGCTTGCAGAGCGTGGTTCGTGGCCGCGAGCATCGGCGCCGTCGAGGCCTCGAAGGATCAAGGCGTCTGCCGGTGGAACAACGTCATCAAATCTCTCCAACAACACGGAAAGACCAAGCTCAGATCTTACTACCAAGCCAAGAAGATCTCTGCTTCCTCTTCTTCAGCCATTGGCAACCAAATGAAGAGGTGTCGCGAGGAAAAAATGAGGAAAGTCATGGACTTGAGCTGTTTGGGTCCCAGTACCATCAGATTCTAG

mRNA sequence

ATGTCGAAGAGCGCAGCTTGCAGAGCGTGGTTCGTGGCCGCGAGCATCGGCGCCGTCGAGGCCTCGAAGGATCAAGGCGTCTGCCGGTGGAACAACGTCATCAAATCTCTCCAACAACACGGAAAGACCAAGCTCAGATCTTACTACCAAGCCAAGAAGATCTCTGCTTCCTCTTCTTCAGCCATTGGCAACCAAATGAAGAGGTGTCGCGAGGAAAAAATGAGGAAAGTCATGGACTTGAGCTGTTTGGGTCCCAGTACCATCAGATTCTAG

Coding sequence (CDS)

ATGTCGAAGAGCGCAGCTTGCAGAGCGTGGTTCGTGGCCGCGAGCATCGGCGCCGTCGAGGCCTCGAAGGATCAAGGCGTCTGCCGGTGGAACAACGTCATCAAATCTCTCCAACAACACGGAAAGACCAAGCTCAGATCTTACTACCAAGCCAAGAAGATCTCTGCTTCCTCTTCTTCAGCCATTGGCAACCAAATGAAGAGGTGTCGCGAGGAAAAAATGAGGAAAGTCATGGACTTGAGCTGTTTGGGTCCCAGTACCATCAGATTCTAG

Protein sequence

MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSSAIGNQMKRCREEKMRKVMDLSCLGPSTIRF

Homology

[Close]

BLAST of CmoCh04G009890 vs. ExPASy TrEMBL
Match: A0A6J1FVH7 (uncharacterized protein LOC111447671 OS=Cucurbita moschata OX=3662 GN=LOC111447671 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.3e-42
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60
          MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS
Sbjct: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60

Query: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
          AIGNQMKRCREEKMRKVMDLSCLGPSTIRF
Sbjct: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh04G009890 vs. ExPASy TrEMBL
Match: A0A6J1JZW3 (uncharacterized protein LOC111489778 OS=Cucurbita maxima OX=3661 GN=LOC111489778 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.2e-39
Identity = 87/90 (96.67%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60
          MSKSAACRAWFVAASIGAVEA KDQGVCRWNNVIKSLQQHGKTKLRSYY AKKISASSSS
Sbjct: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSS 60

Query: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
          AIGNQMKR REEKMRKVMDLSCLGPSTIRF
Sbjct: 61 AIGNQMKRSREEKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh04G009890 vs. ExPASy TrEMBL
Match: A0A0A0L594 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099650 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 8.0e-37
Identity = 80/90 (88.89%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60
          MS+SA CRAWFVAASIGAVEA KDQGVCRWNNVIKSLQQHGKTK+RSYYQAKK+SASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
          AI NQ+K+ RE+KMRKVMDLSCLGPSTIRF
Sbjct: 61 AIANQIKKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh04G009890 vs. ExPASy TrEMBL
Match: A0A5A7TZR6 (Putative wound-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00840 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.6e-35
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60
          MS+SA CRAWFVAASIGAVEA KDQGVCRWNNVIKSLQQHGKTK+RSYYQAKK+SASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
          AI  Q+ + RE+KMRKVMDLSCLGPSTIRF
Sbjct: 61 AIAYQINKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh04G009890 vs. ExPASy TrEMBL
Match: A0A6J1JD67 (uncharacterized protein LOC111483317 OS=Cucurbita maxima OX=3661 GN=LOC111483317 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.4e-35
Identity = 77/90 (85.56%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60
          MS+SAACRAWFVAASIGAVEA KDQGVCRWNN+IKSL QHG +KLRSYYQAKK+SASSSS
Sbjct: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGSSKLRSYYQAKKLSASSSS 60

Query: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
          AI NQ+ + REEKMRKVMDL CLGPSTIRF
Sbjct: 61 AISNQINKSREEKMRKVMDLGCLGPSTIRF 90

[Close]

BLAST of CmoCh04G009890 vs. NCBI nr
Match: XP_022942717.1 (uncharacterized protein LOC111447671 [Cucurbita moschata] >XP_022942718.1 uncharacterized protein LOC111447671 [Cucurbita moschata])

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60
          MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS
Sbjct: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60

Query: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
          AIGNQMKRCREEKMRKVMDLSCLGPSTIRF
Sbjct: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh04G009890 vs. NCBI nr
Match: KAG7031383.1 (hypothetical protein SDJN02_05423, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175.6 bits (444), Expect = 1.9e-40
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60
          MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS
Sbjct: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60

Query: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
          AIGNQMKR REEKMRKVMDLSCLGPSTIRF
Sbjct: 61 AIGNQMKRSREEKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh04G009890 vs. NCBI nr
Match: XP_022993930.1 (uncharacterized protein LOC111489778 [Cucurbita maxima])

HSP 1 Score: 171.0 bits (432), Expect = 4.6e-39
Identity = 87/90 (96.67%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60
          MSKSAACRAWFVAASIGAVEA KDQGVCRWNNVIKSLQQHGKTKLRSYY AKKISASSSS
Sbjct: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSS 60

Query: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
          AIGNQMKR REEKMRKVMDLSCLGPSTIRF
Sbjct: 61 AIGNQMKRSREEKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh04G009890 vs. NCBI nr
Match: XP_023538267.1 (uncharacterized protein LOC111799095 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.2 bits (430), Expect = 7.9e-39
Identity = 86/90 (95.56%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60
          MSKSAACRAWFVAASIGAVEA KDQGVCRWNNVIKSLQQHGKTK RSYYQAKKISASSSS
Sbjct: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKISASSSS 60

Query: 61 AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
          AIGNQMKR REEK+RKVMDLSCLGPSTIRF
Sbjct: 61 AIGNQMKRSREEKVRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh04G009890 vs. NCBI nr
Match: XP_038877273.1 (uncharacterized protein LOC120069557 [Benincasa hispida])

HSP 1 Score: 164.1 bits (414), Expect = 5.7e-37
Identity = 82/90 (91.11%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1   MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60
           MSKSAACRAWFVAASIGAVEA KDQGVCRWNNVIKSLQQHGKTK RSYYQAKK+SASSSS
Sbjct: 74  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKLSASSSS 133

Query: 61  AIGNQMKRCREEKMRKVMDLSCLGPSTIRF 91
           AI NQ+ + REEKMRKVMDLSCLGPSTIRF
Sbjct: 134 AIANQINKSREEKMRKVMDLSCLGPSTIRF 163

[Close]

BLAST of CmoCh04G009890 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-15
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 4  SAACRAWFVAASIGAVEASKDQ-GVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSSAI 63
          S+A + W VAASIGAVEA KDQ GVCRWN VI+S  Q+ +  LRS  QAKK+S SSS   
Sbjct: 2  SSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLS-SSSIDY 61

Query: 64 GNQMKRCREEKMRKVMDLSCLGPS 87
           N+ K+  EE +R VM LSC GPS
Sbjct: 62 TNKTKQA-EESLRTVMYLSCWGPS 83

[Close]

BLAST of CmoCh04G009890 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 73.6 bits (179), Expect = 9.4e-14
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 4  SAACRAWFVAASIGAVEASKDQ-GVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSSAI 63
          S+  +AW VA SIGAVEA KDQ G+CRWN +++S+ QH +  +RS  Q K+ S+SS SA 
Sbjct: 2  SSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAA 61

Query: 64 -----GNQMKRCREEKMRKVMDLSCLGPS 87
                ++  +  EE +R VM LSC GP+
Sbjct: 62 VTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of CmoCh04G009890 vs. TAIR 10
Match: AT4G33560.1 (Wound-responsive family protein )

HSP 1 Score: 57.4 bits (137), Expect = 6.9e-09
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 9  AWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKIS--ASSSSAIGNQM 68
          +W VA +I AVE  KDQGV RWN + + L +    ++R+     + S   SSSSA   + 
Sbjct: 8  SWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67

Query: 69 KRCR----EEKMRKVMDLSCLGPSTIRF 91
          K       E    K M LSC GP+T+RF
Sbjct: 68 KPLSTTPFETSFEKAMGLSCFGPTTVRF 95

[Close]

BLAST of CmoCh04G009890 vs. TAIR 10
Match: AT2G14070.1 (wound-responsive protein-related )

HSP 1 Score: 43.1 bits (100), Expect = 1.4e-04
Identity = 31/100 (31.00%), Postives = 50/100 (50.00%), Query Frame = 0


Query: 1   MSKSAACR--AWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASS 60
           MS +A+ R  +W VA +I AVE        RWN  ++   +  + +LR+     +  +S+
Sbjct: 104 MSAAASTRHTSWMVATAIAAVET-------RWNYPLRFFNKDVRARLRAIAVTSRPPSSA 163

Query: 61  SSAIGNQMKRCREE--------KMRKVMDLSCLGPSTIRF 91
           SS+  +     +E          M +VM LSC GP+T+RF
Sbjct: 164 SSSSSSSADLVKENHPMPKSEASMERVMCLSCFGPTTVRF 196

The following BLAST results are available for this feature:

BLAST of CmoCh04G009890 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G009890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVH7	6.3e-42	100.00	uncharacterized protein LOC111447671 OS=Cucurbita moschata OX=3662 GN=LOC1114476...	[more]
A0A6J1JZW3	2.2e-39	96.67	uncharacterized protein LOC111489778 OS=Cucurbita maxima OX=3661 GN=LOC111489778...	[more]
A0A0A0L594	8.0e-37	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099650 PE=4 SV=1	[more]
A0A5A7TZR6	2.6e-35	86.67	Putative wound-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1JD67	4.4e-35	85.56	uncharacterized protein LOC111483317 OS=Cucurbita maxima OX=3661 GN=LOC111483317...	[more]

BLAST of CmoCh04G009890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942717.1	1.3e-41	100.00	uncharacterized protein LOC111447671 [Cucurbita moschata] >XP_022942718.1 unchar...	[more]
KAG7031383.1	1.9e-40	98.89	hypothetical protein SDJN02_05423, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022993930.1	4.6e-39	96.67	uncharacterized protein LOC111489778 [Cucurbita maxima]	[more]
XP_023538267.1	7.9e-39	95.56	uncharacterized protein LOC111799095 [Cucurbita pepo subsp. pepo]	[more]
XP_038877273.1	5.7e-37	91.11	uncharacterized protein LOC120069557 [Benincasa hispida]	[more]

BLAST of CmoCh04G009890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10265.1	1.0e-15	59.52	Wound-responsive family protein	[more]
AT4G10270.1	9.4e-14	47.19	Wound-responsive family protein	[more]
AT4G33560.1	6.9e-09	39.77	Wound-responsive family protein	[more]
AT2G14070.1	1.4e-04	31.00	wound-responsive protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 12..85 e-value: 2.0E-25 score: 89.6
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 4..90
None	No IPR available	PANTHER	PTHR33090:SF69	WOUND-RESPONSIVE FAMILY PROTEIN	coord: 4..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G009890.1	CmoCh04G009890.1	mRNA