CmoCh04G009640 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G009640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	PMD domain-containing protein
Location	Cmo_Chr04: 4903172 .. 4904211 (-)
RNA-Seq Expression	CmoCh04G009640
Synteny	CmoCh04G009640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAGATTGGTTCTGAAAGATCAAAGTCATGGAACATATACACAACTCCAGACCAGAGCCCATCATCTCAAACAGGCATTGGTCAAGACGCTCCTTGGAAGAACTTTGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCTACTGCAATCTTGATATCCATGTTCCTTATCATGGCCATCTTTGAGCATCTTTTTAGACCAACTTCTTCTTTCTCCTCCTCTGGTGAAGTGACCAACAACTTTGCACAATCGGGTCCGGTCGAGAAATTCGCTAGTCCAAATACGGTATGTTTCGACTCGGATTGTTTACCTTTACAGTTTGTGTTTCTTGGCTTGTGGGGCTTAGATTACCAACCTTTGATATTATTTAACTCGTTACCGCTTTCCCTTTCCCATAAACAAGTGTTTCAGTGGCTTAGGCTTTAAACTACATCATATCCTATATCAATTCCCCTTCCCCTTGAACAGATTTGTTTAGAGACCTGTAGGTGAAAACAACTTAAAGCATACCACTTTTTAGAATATGAGATATCTGTTCCCAGTCCTTGACTCGTAGTAGATAAAGTCACCTTGAGACGTTTCTCTAATGAAAATGGGCATTTCGATTGGTTTCGAGAAAAACAATCATAATTAACTCTTCTAAAATTTCGTTAACTCTTCATAGAACTCTTCGTACGTGCGTCGAAAAACACTCATAATATCCTAACTAGTTTTGTTTCTGCTATTTTTTCTTGTCATCTTCAAGAACATTATCTTTTATCAGAACAGTGACAAGACACAGAACATCAACACAAACCAGTACCAATCATAACACAATACATGCTTTTCTTTCAAGGACAAGACATTGCATTGGACATAGGAGATGATATGTTTTTGTTCTGTGGCAGGTGCCAACATCATATGCAGCTGATTTCTCGGTGTTGATGCCAGGTCAGCACATCCCCACCTTCATTGCCCAGCCAGCCCCTCTGCCATGCCAAAGAGAGGGGACTTATTGGCCATCTCACGACCATAATTTTTTAGGCCCTTGA

mRNA sequence

ATGAGTGAGATTGGTTCTGAAAGATCAAAGTCATGGAACATATACACAACTCCAGACCAGAGCCCATCATCTCAAACAGGCATTGGTCAAGACGCTCCTTGGAAGAACTTTGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCTACTGCAATCTTGATATCCATGTTCCTTATCATGGCCATCTTTGAGCATCTTTTTAGACCAACTTCTTCTTTCTCCTCCTCTGGTGAAGTGACCAACAACTTTGCACAATCGGGTCCGGTCGAGAAATTCGCTAGTCCAAATACGGTGCCAACATCATATGCAGCTGATTTCTCGGTGTTGATGCCAGGTCAGCACATCCCCACCTTCATTGCCCAGCCAGCCCCTCTGCCATGCCAAAGAGAGGGGACTTATTGGCCATCTCACGACCATAATTTTTTAGGCCCTTGA

Coding sequence (CDS)

ATGAGTGAGATTGGTTCTGAAAGATCAAAGTCATGGAACATATACACAACTCCAGACCAGAGCCCATCATCTCAAACAGGCATTGGTCAAGACGCTCCTTGGAAGAACTTTGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCTACTGCAATCTTGATATCCATGTTCCTTATCATGGCCATCTTTGAGCATCTTTTTAGACCAACTTCTTCTTTCTCCTCCTCTGGTGAAGTGACCAACAACTTTGCACAATCGGGTCCGGTCGAGAAATTCGCTAGTCCAAATACGGTGCCAACATCATATGCAGCTGATTTCTCGGTGTTGATGCCAGGTCAGCACATCCCCACCTTCATTGCCCAGCCAGCCCCTCTGCCATGCCAAAGAGAGGGGACTTATTGGCCATCTCACGACCATAATTTTTTAGGCCCTTGA

Protein sequence

MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHDHNFLGP

Homology

[Close]

BLAST of CmoCh04G009640 vs. ExPASy TrEMBL
Match: A0A6J1FV27 (uncharacterized protein LOC111447541 OS=Cucurbita moschata OX=3662 GN=LOC111447541 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 5.7e-77
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLI 60
           MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLI
Sbjct: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLI 60

Query: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 120
           MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI
Sbjct: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQREGTYWPSHDHNFLGP 146
           AQPAPLPCQREGTYWPSHDHNFLGP
Sbjct: 121 AQPAPLPCQREGTYWPSHDHNFLGP 145

[Close]

BLAST of CmoCh04G009640 vs. ExPASy TrEMBL
Match: A0A6J1J0H1 (uncharacterized protein LOC111482330 OS=Cucurbita maxima OX=3661 GN=LOC111482330 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.2e-76
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLI 60
           MSEIGSERSKSWNIYTTPDQSPSSQTGIGQ+APWKNFGSSMNAISFGFVATAILISMFLI
Sbjct: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQEAPWKNFGSSMNAISFGFVATAILISMFLI 60

Query: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 120
           MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI
Sbjct: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQREGTYWPSHDHNFLGP 146
           AQPAPLPCQREGTYWPSHDHNF GP
Sbjct: 121 AQPAPLPCQREGTYWPSHDHNFSGP 145

[Close]

BLAST of CmoCh04G009640 vs. ExPASy TrEMBL
Match: A0A0A0L6N7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110010 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.3e-68
Identity = 130/145 (89.66%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLI 60
           MSEIGSERSKSWNIYTTPDQSPSSQTGIGQ+APWKNFGSSMNAISFGFVATAILISMFL+
Sbjct: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQEAPWKNFGSSMNAISFGFVATAILISMFLV 60

Query: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 120
           MAIFEHLFRP+S FSSS EVTNN ++S P EKFASPNTV TSYA+DFSVLMPGQHIPTFI
Sbjct: 61  MAIFEHLFRPSSPFSSSDEVTNNSSESTPAEKFASPNTVSTSYASDFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQREGTYWPSHDHNFLGP 146
           AQPAPLPCQREG YWPSH HNF GP
Sbjct: 121 AQPAPLPCQREGIYWPSHRHNFSGP 145

[Close]

BLAST of CmoCh04G009640 vs. ExPASy TrEMBL
Match: A0A1S4DZ08 (uncharacterized protein LOC103493322 OS=Cucumis melo OX=3656 GN=LOC103493322 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.0e-67
Identity = 130/145 (89.66%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLI 60
           MSEIGSERSKSWNIYTTPDQSPSSQTGIGQ+APWKNFGSSMNAISFGFVATAILISMFL+
Sbjct: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQEAPWKNFGSSMNAISFGFVATAILISMFLV 60

Query: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 120
           MAIFEHLFRP+S FSSS EVTNN ++S P EKFASPNTV TSYA+DFSVLMPGQHIPTFI
Sbjct: 61  MAIFEHLFRPSSPFSSSDEVTNN-SESTPAEKFASPNTVSTSYASDFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQREGTYWPSHDHNFLGP 146
           AQPAPLPCQREG YWPSH HNF GP
Sbjct: 121 AQPAPLPCQREGIYWPSHHHNFSGP 144

[Close]

BLAST of CmoCh04G009640 vs. ExPASy TrEMBL
Match: A0A5D3BTG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00690 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.0e-67
Identity = 130/145 (89.66%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLI 60
           MSEIGSERSKSWNIYTTPDQSPSSQTGIGQ+APWKNFGSSMNAISFGFVATAILISMFL+
Sbjct: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQEAPWKNFGSSMNAISFGFVATAILISMFLV 60

Query: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 120
           MAIFEHLFRP+S FSSS EVTNN ++S P EKFASPNTV TSYA+DFSVLMPGQHIPTFI
Sbjct: 61  MAIFEHLFRPSSPFSSSDEVTNN-SESTPAEKFASPNTVSTSYASDFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQREGTYWPSHDHNFLGP 146
           AQPAPLPCQREG YWPSH HNF GP
Sbjct: 121 AQPAPLPCQREGIYWPSHHHNFSGP 144

[Close]

BLAST of CmoCh04G009640 vs. NCBI nr
Match: XP_022942533.1 (uncharacterized protein LOC111447541 [Cucurbita moschata] >XP_022942534.1 uncharacterized protein LOC111447541 [Cucurbita moschata])

HSP 1 Score: 296.6 bits (758), Expect = 1.2e-76
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLI 60
           MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLI
Sbjct: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLI 60

Query: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 120
           MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI
Sbjct: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQREGTYWPSHDHNFLGP 146
           AQPAPLPCQREGTYWPSHDHNFLGP
Sbjct: 121 AQPAPLPCQREGTYWPSHDHNFLGP 145

[Close]

BLAST of CmoCh04G009640 vs. NCBI nr
Match: XP_022983836.1 (uncharacterized protein LOC111482330 [Cucurbita maxima] >XP_022983844.1 uncharacterized protein LOC111482330 [Cucurbita maxima] >XP_022983852.1 uncharacterized protein LOC111482330 [Cucurbita maxima] >KAG7031361.1 hypothetical protein SDJN02_05401 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.7 bits (748), Expect = 1.7e-75
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLI 60
           MSEIGSERSKSWNIYTTPDQSPSSQTGIGQ+APWKNFGSSMNAISFGFVATAILISMFLI
Sbjct: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQEAPWKNFGSSMNAISFGFVATAILISMFLI 60

Query: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 120
           MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI
Sbjct: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQREGTYWPSHDHNFLGP 146
           AQPAPLPCQREGTYWPSHDHNF GP
Sbjct: 121 AQPAPLPCQREGTYWPSHDHNFSGP 145

[Close]

BLAST of CmoCh04G009640 vs. NCBI nr
Match: KAG6600722.1 (hypothetical protein SDJN03_05955, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.7 bits (748), Expect = 1.7e-75
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLI 60
           MSEIGSERSKSWNIYTTPDQSPSSQTGIGQ+APWKNFGSSMNAISFGFVATAILISMFLI
Sbjct: 86  MSEIGSERSKSWNIYTTPDQSPSSQTGIGQEAPWKNFGSSMNAISFGFVATAILISMFLI 145

Query: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 120
           MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI
Sbjct: 146 MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 205

Query: 121 AQPAPLPCQREGTYWPSHDHNFLGP 146
           AQPAPLPCQREGTYWPSHDHNF GP
Sbjct: 206 AQPAPLPCQREGTYWPSHDHNFSGP 230

[Close]

BLAST of CmoCh04G009640 vs. NCBI nr
Match: XP_023540824.1 (uncharacterized protein LOC111801082 [Cucurbita pepo subsp. pepo] >XP_023540834.1 uncharacterized protein LOC111801082 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLI 60
           MSEIGSERSKSWNIYTTPDQSPSSQ GIGQ+APWKNFGSSMNAISFGFVATAILISMFLI
Sbjct: 1   MSEIGSERSKSWNIYTTPDQSPSSQRGIGQEAPWKNFGSSMNAISFGFVATAILISMFLI 60

Query: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 120
           MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKF+SPNTVPTSYAADFSVLMPGQHIPTFI
Sbjct: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFSSPNTVPTSYAADFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQREGTYWPSHDHNFLGP 146
           AQPAPLPCQREGTYWPSHDHNF GP
Sbjct: 121 AQPAPLPCQREGTYWPSHDHNFSGP 145

[Close]

BLAST of CmoCh04G009640 vs. NCBI nr
Match: XP_004133716.1 (uncharacterized protein LOC101206733 isoform X1 [Cucumis sativus] >KGN56252.1 hypothetical protein Csa_010216 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-67
Identity = 130/145 (89.66%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLI 60
           MSEIGSERSKSWNIYTTPDQSPSSQTGIGQ+APWKNFGSSMNAISFGFVATAILISMFL+
Sbjct: 1   MSEIGSERSKSWNIYTTPDQSPSSQTGIGQEAPWKNFGSSMNAISFGFVATAILISMFLV 60

Query: 61  MAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFI 120
           MAIFEHLFRP+S FSSS EVTNN ++S P EKFASPNTV TSYA+DFSVLMPGQHIPTFI
Sbjct: 61  MAIFEHLFRPSSPFSSSDEVTNNSSESTPAEKFASPNTVSTSYASDFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQREGTYWPSHDHNFLGP 146
           AQPAPLPCQREG YWPSH HNF GP
Sbjct: 121 AQPAPLPCQREGIYWPSHRHNFSGP 145

[Close]

BLAST of CmoCh04G009640 vs. TAIR 10
Match: AT1G09812.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58007.2); Has 93 Blast hits to 93 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 115.5 bits (288), Expect = 3.5e-26
Identity = 70/132 (53.03%), Postives = 88/132 (66.67%), Query Frame = 0


Query: 8   RSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFEHL 67
           +S SW+IY +P +  S       + PW++  +SMNAISFGFVATAILISMFLIMAIFEHL
Sbjct: 3   KSSSWSIY-SPREGDS-------EGPWRS-STSMNAISFGFVATAILISMFLIMAIFEHL 62

Query: 68  FRP-TSSFSSSGEVTNNFAQ-SGPVEKFA-SPNTVPTSYAADFSVLMPGQHIPTFIAQPA 127
           FRP  SSF S  ++       S   +K A   + VP S   D SV+MPG+ +P+ IA PA
Sbjct: 63  FRPENSSFDSPHQIRQRQRDGSSQFQKLADQASMVPVSTVVDVSVVMPGEKLPSHIALPA 122

Query: 128 PLPCQREGTYWP 137
           PLPC+REG +WP
Sbjct: 123 PLPCRREGIHWP 125

[Close]

BLAST of CmoCh04G009640 vs. TAIR 10
Match: AT1G58007.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1); Has 91 Blast hits to 91 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.4 bits (259), Expect = 8.0e-23
Identity = 64/133 (48.12%), Postives = 80/133 (60.15%), Query Frame = 0


Query: 6   SERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFE 65
           S   ++W+IY T D S                GSSMNAISFGFVATAILI MF+IMAI E
Sbjct: 4   SRSIRTWSIYRTKDTS----------------GSSMNAISFGFVATAILILMFIIMAILE 63

Query: 66  HLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFIAQPAP 125
           HLFR  S  SSS +V +    S   +K A   ++     +D SV+MPG  +P+++A PAP
Sbjct: 64  HLFR--SDHSSSYDVDD----SSQFQKLAEKASMVPVTTSDVSVVMPGDKLPSYVALPAP 114

Query: 126 LPCQREGTYWPSH 139
            PC+REG  WPSH
Sbjct: 124 FPCRREGIRWPSH 114

[Close]

BLAST of CmoCh04G009640 vs. TAIR 10
Match: AT1G58007.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 104.4 bits (259), Expect = 8.0e-23
Identity = 64/133 (48.12%), Postives = 80/133 (60.15%), Query Frame = 0


Query: 6   SERSKSWNIYTTPDQSPSSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFLIMAIFE 65
           S   ++W+IY T D S                GSSMNAISFGFVATAILI MF+IMAI E
Sbjct: 4   SRSIRTWSIYRTKDTS----------------GSSMNAISFGFVATAILILMFIIMAILE 63

Query: 66  HLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFIAQPAP 125
           HLFR  S  SSS +V +    S   +K A   ++     +D SV+MPG  +P+++A PAP
Sbjct: 64  HLFR--SDHSSSYDVDD----SSQFQKLAEKASMVPVTTSDVSVVMPGDKLPSYVALPAP 114

Query: 126 LPCQREGTYWPSH 139
            PC+REG  WPSH
Sbjct: 124 FPCRREGIRWPSH 114

[Close]

BLAST of CmoCh04G009640 vs. TAIR 10
Match: AT1G11120.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19
Identity = 58/121 (47.93%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 30  QDAPWKN-FGSSMNAISFGFVATAILISMFLIMAIFEHLFR-----PTSSFSSSGEV--- 89
           ++ PWK+ F  S+NA+SFGFVATAILISMFL+MAIFE L R      T+S SSS  V   
Sbjct: 26  REEPWKSQFDDSVNAVSFGFVATAILISMFLVMAIFERLIRTTTTSTTNSDSSSSRVLPG 85

Query: 90  -TNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTFIAQPAPLPCQREGTYWPSHD 141
             +    +G   K    +   T Y+   SVLMPG  IPTFIA PAP+PC  +      H 
Sbjct: 86  MDSRVGFNGAATKLGYQSPKMTVYSNGVSVLMPGDDIPTFIAHPAPVPCPPQNISQSQHQ 145

[Close]

BLAST of CmoCh04G009640 vs. TAIR 10
Match: AT1G11120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1); Has 270 Blast hits to 255 proteins in 62 species: Archae - 0; Bacteria - 2; Metazoa - 93; Fungi - 14; Plants - 126; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). )

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-16
Identity = 61/147 (41.50%), Postives = 74/147 (50.34%), Query Frame = 0


Query: 30  QDAPWKN-FGSSMNAISFGFVATAILISMFLIMAIFEHLFR-----PTSSFSSSGEV--- 89
           ++ PWK+ F  S+NA+SFGFVATAILISMFL+MAIFE L R      T+S SSS  V   
Sbjct: 26  REEPWKSQFDDSVNAVSFGFVATAILISMFLVMAIFERLIRTTTTSTTNSDSSSSRVLPG 85

Query: 90  -TNNFAQSGPVEKF------ASPNTV--------------------PTSYAADFSVLMPG 141
             +    +G   K       AS N +                     T Y+   SVLMPG
Sbjct: 86  MDSRVGFNGAATKLGYQSPKASNNRIVFSFSFNILKSELFIVIILRMTVYSNGVSVLMPG 145

The following BLAST results are available for this feature:

BLAST of CmoCh04G009640 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G009640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FV27	5.7e-77	100.00	uncharacterized protein LOC111447541 OS=Cucurbita moschata OX=3662 GN=LOC1114475...	[more]
A0A6J1J0H1	8.2e-76	98.62	uncharacterized protein LOC111482330 OS=Cucurbita maxima OX=3661 GN=LOC111482330...	[more]
A0A0A0L6N7	6.3e-68	89.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110010 PE=4 SV=1	[more]
A0A1S4DZ08	7.0e-67	89.66	uncharacterized protein LOC103493322 OS=Cucumis melo OX=3656 GN=LOC103493322 PE=...	[more]
A0A5D3BTG7	7.0e-67	89.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmoCh04G009640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942533.1	1.2e-76	100.00	uncharacterized protein LOC111447541 [Cucurbita moschata] >XP_022942534.1 unchar...	[more]
XP_022983836.1	1.7e-75	98.62	uncharacterized protein LOC111482330 [Cucurbita maxima] >XP_022983844.1 uncharac...	[more]
KAG6600722.1	1.7e-75	98.62	hypothetical protein SDJN03_05955, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023540824.1	1.9e-74	97.24	uncharacterized protein LOC111801082 [Cucurbita pepo subsp. pepo] >XP_023540834....	[more]
XP_004133716.1	1.3e-67	89.66	uncharacterized protein LOC101206733 isoform X1 [Cucumis sativus] >KGN56252.1 hy...	[more]

BLAST of CmoCh04G009640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09812.1	3.5e-26	53.03	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G58007.1	8.0e-23	48.12	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G58007.2	8.0e-23	48.12	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G11120.2	1.4e-19	47.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G11120.1	3.2e-16	41.50	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR33728:SF3	MULTIDRUG RESISTANCE PROTEIN	coord: 1..143
None	No IPR available	PANTHER	PTHR33728	CTTNBP 2 AMINO-TERMINAL-LIKE PROTEIN	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G009640.1	CmoCh04G009640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane