CmoCh04G007910 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G007910
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SAP30_Sin3_bdg domain-containing protein
Location	Cmo_Chr04: 3953402 .. 3955854 (-)
RNA-Seq Expression	CmoCh04G007910
Synteny	CmoCh04G007910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGAACCGGAGTTTTGTGCTTCTAGAATTCAGTCTCCTTTTCGTGAGGAGAGTTGGGATGAAGAGCTTTCAGTTCTTCCAAGGCACACTAAAGTTATTGTCACTGGAAATAACAGAACAAAGTCTGTTTTACTGGGATTGCAAGGCGTAGTTAAGAAGGCTGTTGGCCTTGGAGGCTGGCATTGGCTGGTATTCTCTTTTTCATCCTGTCTTTTCCCTTTGTTCCTCGTCTCTTATTTACCCTCTGTATTATGCATTTTTCTATCTGCCCATTTCCTTGTCGTGAAAGTTACACCAAAAGTCACAACAATAACCAACTATGATTGGAGAAATGCTATTATTTTGTTTTAGCTCCTACGTTTCTAAGCTAGAAGCCTGTAATCAGAAGGAATTTATGACTCCACTTGATAAGTTTTCTGTTCTTAAAAATTGTGCTTGCTTCTAATCTCCTTTAATAACACATTTGAGTTCTTATAAAGTTCCAAAAACAGAAACTATTGTTTCCATTTTCAAATTTTAGCTTAGATTTCTTATAGTATATAAGACGATTATTTTCGGCTGTTTCAATTTATCTCTGTGAATTTTGATTAAAGGCTTTGGAGATGATTAGCTGTATGGTTGGAATGTTCCGACAAGGCTCCGCTTAACGGTCTCTTGCATGGCTCATTTCCCGTGCAAAAGAACGAAACTAGTTACCCTACCTCTGTTTGATTATTTAATGAATTCACTTCATTCGTTACCTCATGATCCTTAGTAGTATGCTAAATTAGATTTTGACTATAAAGGAGTTTGATTTTTGCTGTGATGGACTCTTTCCATGTAAGGTTTTGAAAAATGGGGTTGAAGTGAAGCTGCAAAGGAATGCACTGAGTGTGCTGGAACATCCCACAGGAAACAAAAATGATGATCATGATTTGGACAACTCAAGTTGTAGCTCCGACATGGGTGAGAAGGACAATGATCTGTGTAAGTCACATCTTCATGTTGCCAAATGATGGACATGGACCGACCTCCATGTTCCCAAATCGTTTCTGTTCCCTTTTTAAAGTGGATTTTATTTAGCCTGAATTGTGTGGGAGACTTAAAGTATTACCGTTCATGGGCAGCTAGCAGCATTGTTTTCCACAAGATAAGCAAACAAAGAGTGAGACAAATTAGGCCATGGGCTCCATCTTCATCGGCAAAGCCAACAGGTCGGGGCAGCTGTGGGGAAATTCAATCTATTCACATGCCGAAACTGGTCACGGTGAGAAATTTGGAAACCATTGATTTTCTTTTTTTGATATCCATCGAGTGCCCAAACAAATATTTGGTTGTCAAGACCGTAGGATTTTCATATAGCCCTTCAGTTCTGAAAATTGGAGCAAATTGGATAGAAAATCTTGAGATTTGTACTTTTTAGGGGTAAAATTCATTTGAATTTATTTTCTATTAAAGTAACTAGTTTAGTATCCCCTCCCACTCGTTCCTCTCTCCAATTGACGTGAGATCTCATAATCCACCCCCTTCGAAGTCCAGCATCTAATACCATTTGTAATGGCCAAGCCCACCACTAGCAAATATTGTCCTCTTTAGACTTTCCCTTCCGAGCTTCCCCTCAAGGTTTTTAAAACGTGTTTTTTAGGGAGAGATTCCACATCCTTGTAAAGAATATTTTGTTCTTCTTCCTAACCAATGTGAGATCTAAGAGTCTTTGAATAGAATTAACAATTACTAACTAGCCTACTTTTTTATATGTTGCTACCAAGTAGAAACAAATTGCAAACTTGATGGACCAATTAGAAACAATTATTCAAACCTCGAGATTATGATTTTAGGCTCATGAGCTGTTTTTCTTGAATCTTGGGTAGCTAAGCATTGACAAAATTGTTTGTTTTTGGAGCATGCAGCGGGTGAAACTGGGGAAACTAGGAACAGAATCTTTGTGGAGATACATCAGGCACTTCAATCTAGTGGGTCTCACTGCAACACTTGCAATTTTATGCTTCTTCTTTTTTAAAATTTTTTTTCTCTATATACTTAACTAAATCCATTCCAGGTGAATAGCATTTCAAATGCTTCAAGGGACCAAATCCTTCACGTTGTGCAACGACATTTTGCATTACAGGTTCTTTCTCTTTCTCTTTCTCTCTCTTTGCTGTTTGCATTTGAAATTATGAACTACTTTGTTTTGAGAAACATATCTGTCTGTGTTCGTTTATTTGATACAGACGAGCTTGAACGAGGCATCAGTGATGACTGAATTCATTCGCACTGTTAAGAGACGAAGGGAGTGAATCGAGTGACAGCGAGCGAGCGTGAATGATGATTGAAAAGTGATTTCACACAAATGTATGTTTGTATAGTGATTATGTCTGTTAAATGCTAACTATAACTTCGTAGCTTCTAACTTCTAACACTCGACCTTGATTACTACCTAGACCCGTAATATATTTTTAGCTTCTTTCTCT

mRNA sequence

ATGCTGGAACCGGAGTTTTGTGCTTCTAGAATTCAGTCTCCTTTTCGTGAGGAGAGTTGGGATGAAGAGCTTTCAGTTCTTCCAAGGCACACTAAAGTTATTGTCACTGGAAATAACAGAACAAAGTCTGTTTTACTGGGATTGCAAGGCGTAGTTAAGAAGGCTGTTGGCCTTGGAGGCTGGCATTGGCTGGTTTTGAAAAATGGGGTTGAAGTGAAGCTGCAAAGGAATGCACTGAGTGTGCTGGAACATCCCACAGGAAACAAAAATGATGATCATGATTTGGACAACTCAAGTTGTAGCTCCGACATGGGTGAGAAGGACAATGATCTGTCTAGCAGCATTGTTTTCCACAAGATAAGCAAACAAAGAGTGAGACAAATTAGGCCATGGGCTCCATCTTCATCGGCAAAGCCAACAGGTCGGGGCAGCTGTGGGGAAATTCAATCTATTCACATGCCGAAACTGGTCACGCGGGTGAAACTGGGGAAACTAGGAACAGAATCTTTGTGGAGATACATCAGGCACTTCAATCTAGTGAATAGCATTTCAAATGCTTCAAGGGACCAAATCCTTCACGTTGTGCAACGACATTTTGCATTACAGACGAGCTTGAACGAGGCATCAGTGATGACTGAATTCATTCGCACTGTTAAGAGACGAAGGGAGTGAATCGAGTGACAGCGAGCGAGCGTGAATGATGATTGAAAAGTGATTTCACACAAATGTATGTTTGTATAGTGATTATGTCTGTTAAATGCTAACTATAACTTCGTAGCTTCTAACTTCTAACACTCGACCTTGATTACTACCTAGACCCGTAATATATTTTTAGCTTCTTTCTCT

Coding sequence (CDS)

ATGCTGGAACCGGAGTTTTGTGCTTCTAGAATTCAGTCTCCTTTTCGTGAGGAGAGTTGGGATGAAGAGCTTTCAGTTCTTCCAAGGCACACTAAAGTTATTGTCACTGGAAATAACAGAACAAAGTCTGTTTTACTGGGATTGCAAGGCGTAGTTAAGAAGGCTGTTGGCCTTGGAGGCTGGCATTGGCTGGTTTTGAAAAATGGGGTTGAAGTGAAGCTGCAAAGGAATGCACTGAGTGTGCTGGAACATCCCACAGGAAACAAAAATGATGATCATGATTTGGACAACTCAAGTTGTAGCTCCGACATGGGTGAGAAGGACAATGATCTGTCTAGCAGCATTGTTTTCCACAAGATAAGCAAACAAAGAGTGAGACAAATTAGGCCATGGGCTCCATCTTCATCGGCAAAGCCAACAGGTCGGGGCAGCTGTGGGGAAATTCAATCTATTCACATGCCGAAACTGGTCACGCGGGTGAAACTGGGGAAACTAGGAACAGAATCTTTGTGGAGATACATCAGGCACTTCAATCTAGTGAATAGCATTTCAAATGCTTCAAGGGACCAAATCCTTCACGTTGTGCAACGACATTTTGCATTACAGACGAGCTTGAACGAGGCATCAGTGATGACTGAATTCATTCGCACTGTTAAGAGACGAAGGGAGTGA

Protein sequence

MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKISKQRVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLVNSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE

Homology

[Close]

BLAST of CmoCh04G007910 vs. ExPASy TrEMBL
Match: A0A6J1FR82 (uncharacterized protein LOC111448038 OS=Cucurbita moschata OX=3662 GN=LOC111448038 PE=3 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.5e-121
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60
           MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG
Sbjct: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60

Query: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKI 120
           WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKI
Sbjct: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKI 120

Query: 121 SKQRVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLV 180
           SKQRVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLV
Sbjct: 121 SKQRVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLV 180

Query: 181 NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 224
           NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE
Sbjct: 181 NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 223

[Close]

BLAST of CmoCh04G007910 vs. ExPASy TrEMBL
Match: A0A6J1IZT1 (uncharacterized protein LOC111481424 OS=Cucurbita maxima OX=3661 GN=LOC111481424 PE=3 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 1.7e-120
Identity = 220/223 (98.65%), Postives = 222/223 (99.55%), Query Frame = 0


Query: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60
           MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG
Sbjct: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60

Query: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKI 120
           WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHK+
Sbjct: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKL 120

Query: 121 SKQRVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLV 180
           SKQ+VRQIRPWAPSSSAKPTGRGSCGEIQS HMPKLVTRVKLGKLGTESLWRYIRHFNLV
Sbjct: 121 SKQKVRQIRPWAPSSSAKPTGRGSCGEIQSFHMPKLVTRVKLGKLGTESLWRYIRHFNLV 180

Query: 181 NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 224
           NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE
Sbjct: 181 NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 223

[Close]

BLAST of CmoCh04G007910 vs. ExPASy TrEMBL
Match: A0A6J1C548 (uncharacterized protein LOC111008453 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111008453 PE=3 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.1e-108
Identity = 205/224 (91.52%), Postives = 214/224 (95.54%), Query Frame = 0


Query: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60
           M+EPEFC+SRIQSPFREES DEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG
Sbjct: 1   MMEPEFCSSRIQSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60

Query: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKI 120
           WHWLVLKNGVEVKLQRNALSVLEHPTGN+NDDHD DNSSCSSD+GEKDND SSSIVFHK+
Sbjct: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNENDDHDFDNSSCSSDIGEKDNDFSSSIVFHKL 120

Query: 121 SKQRVRQIRPWAPSSSAK-PTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNL 180
           SK +VRQIRPWAPSSSAK  TGRGS GEIQSIH+PKL  RVKLGKLGTESLWRYIRHFNL
Sbjct: 121 SKHKVRQIRPWAPSSSAKLTTGRGSYGEIQSIHVPKL--RVKLGKLGTESLWRYIRHFNL 180

Query: 181 VNSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 224
           VNSISNASRDQ+LHVVQRHFALQT+LNEASVMTEFIR VKRRRE
Sbjct: 181 VNSISNASRDQVLHVVQRHFALQTNLNEASVMTEFIRAVKRRRE 222

[Close]

BLAST of CmoCh04G007910 vs. ExPASy TrEMBL
Match: A0A0A0KUM7 (SAP30_Sin3_bdg domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G047910 PE=3 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 4.3e-108
Identity = 200/223 (89.69%), Postives = 211/223 (94.62%), Query Frame = 0


Query: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60
           M+EPEFCAS IQSPFREES DEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG
Sbjct: 1   MVEPEFCASNIQSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60

Query: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKI 120
           WHWLVLKNGVEVKLQRNALSVLEHPTGN+ND+HDLDNSSCSSD+GEKDND SSS+VFHK+
Sbjct: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNENDEHDLDNSSCSSDIGEKDNDFSSSVVFHKL 120

Query: 121 SKQRVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLV 180
           SK +VRQI+PWAPSSSAK T RGS GEIQSIHMPK  TRV+LGKLGTESLWRYI+HFNLV
Sbjct: 121 SKPKVRQIKPWAPSSSAKSTSRGSYGEIQSIHMPKSGTRVRLGKLGTESLWRYIKHFNLV 180

Query: 181 NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 224
           NSISN SRDQIL VVQRHFALQTSLNEASVMTEFIR VK+RRE
Sbjct: 181 NSISNTSRDQILQVVQRHFALQTSLNEASVMTEFIRAVKKRRE 223

[Close]

BLAST of CmoCh04G007910 vs. ExPASy TrEMBL
Match: A0A1S3BU28 (uncharacterized protein LOC103493170 OS=Cucumis melo OX=3656 GN=LOC103493170 PE=3 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 5.6e-108
Identity = 201/223 (90.13%), Postives = 211/223 (94.62%), Query Frame = 0


Query: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60
           M+EPEFCAS IQSPFREES DEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG
Sbjct: 12  MVEPEFCASNIQSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 71

Query: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKI 120
           WHWLVLKNGVEVKLQRNALSVLEHPTGN+ND+ DLDNSSCSSD+GEKDND SSS+VFHK+
Sbjct: 72  WHWLVLKNGVEVKLQRNALSVLEHPTGNENDEPDLDNSSCSSDIGEKDNDFSSSVVFHKL 131

Query: 121 SKQRVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLV 180
           SK +VRQI+ WAPSSSAK TGRGS GEIQSIHMPK  TRVKLGKLGTESLWRYI+HFNLV
Sbjct: 132 SKPKVRQIKQWAPSSSAKSTGRGSYGEIQSIHMPKSGTRVKLGKLGTESLWRYIKHFNLV 191

Query: 181 NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 224
           NSISN SRDQILHVVQRHFALQTSLNEASVMTEFIR VK+RRE
Sbjct: 192 NSISNTSRDQILHVVQRHFALQTSLNEASVMTEFIRAVKKRRE 234

[Close]

BLAST of CmoCh04G007910 vs. NCBI nr
Match: XP_022943250.1 (uncharacterized protein LOC111448038 [Cucurbita moschata] >XP_022943251.1 uncharacterized protein LOC111448038 [Cucurbita moschata])

HSP 1 Score: 445.3 bits (1144), Expect = 3.2e-121
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60
           MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG
Sbjct: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60

Query: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKI 120
           WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKI
Sbjct: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKI 120

Query: 121 SKQRVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLV 180
           SKQRVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLV
Sbjct: 121 SKQRVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLV 180

Query: 181 NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 224
           NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE
Sbjct: 181 NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 223

[Close]

BLAST of CmoCh04G007910 vs. NCBI nr
Match: XP_023534417.1 (uncharacterized protein LOC111795704 [Cucurbita pepo subsp. pepo] >KAG6600567.1 hypothetical protein SDJN03_05800, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031207.1 hypothetical protein SDJN02_05247 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 443.4 bits (1139), Expect = 1.2e-120
Identity = 221/223 (99.10%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60
           MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG
Sbjct: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60

Query: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKI 120
           WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHK+
Sbjct: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKL 120

Query: 121 SKQRVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLV 180
           SKQ+VRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLV
Sbjct: 121 SKQKVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLV 180

Query: 181 NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 224
           NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE
Sbjct: 181 NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 223

[Close]

BLAST of CmoCh04G007910 vs. NCBI nr
Match: XP_022982598.1 (uncharacterized protein LOC111481424 [Cucurbita maxima] >XP_022982606.1 uncharacterized protein LOC111481424 [Cucurbita maxima])

HSP 1 Score: 441.8 bits (1135), Expect = 3.5e-120
Identity = 220/223 (98.65%), Postives = 222/223 (99.55%), Query Frame = 0


Query: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60
           MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG
Sbjct: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60

Query: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKI 120
           WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHK+
Sbjct: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKL 120

Query: 121 SKQRVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLV 180
           SKQ+VRQIRPWAPSSSAKPTGRGSCGEIQS HMPKLVTRVKLGKLGTESLWRYIRHFNLV
Sbjct: 121 SKQKVRQIRPWAPSSSAKPTGRGSCGEIQSFHMPKLVTRVKLGKLGTESLWRYIRHFNLV 180

Query: 181 NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 224
           NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE
Sbjct: 181 NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 223

[Close]

BLAST of CmoCh04G007910 vs. NCBI nr
Match: XP_022136865.1 (uncharacterized protein LOC111008453 isoform X4 [Momordica charantia])

HSP 1 Score: 402.5 bits (1033), Expect = 2.3e-108
Identity = 205/224 (91.52%), Postives = 214/224 (95.54%), Query Frame = 0


Query: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60
           M+EPEFC+SRIQSPFREES DEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG
Sbjct: 1   MMEPEFCSSRIQSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60

Query: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKI 120
           WHWLVLKNGVEVKLQRNALSVLEHPTGN+NDDHD DNSSCSSD+GEKDND SSSIVFHK+
Sbjct: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNENDDHDFDNSSCSSDIGEKDNDFSSSIVFHKL 120

Query: 121 SKQRVRQIRPWAPSSSAK-PTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNL 180
           SK +VRQIRPWAPSSSAK  TGRGS GEIQSIH+PKL  RVKLGKLGTESLWRYIRHFNL
Sbjct: 121 SKHKVRQIRPWAPSSSAKLTTGRGSYGEIQSIHVPKL--RVKLGKLGTESLWRYIRHFNL 180

Query: 181 VNSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 224
           VNSISNASRDQ+LHVVQRHFALQT+LNEASVMTEFIR VKRRRE
Sbjct: 181 VNSISNASRDQVLHVVQRHFALQTNLNEASVMTEFIRAVKRRRE 222

[Close]

BLAST of CmoCh04G007910 vs. NCBI nr
Match: XP_004146519.1 (uncharacterized protein LOC101209634 [Cucumis sativus] >XP_011653177.1 uncharacterized protein LOC101209634 [Cucumis sativus] >KGN53330.1 hypothetical protein Csa_015002 [Cucumis sativus])

HSP 1 Score: 400.6 bits (1028), Expect = 8.9e-108
Identity = 200/223 (89.69%), Postives = 211/223 (94.62%), Query Frame = 0


Query: 1   MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60
           M+EPEFCAS IQSPFREES DEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG
Sbjct: 1   MVEPEFCASNIQSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGG 60

Query: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKI 120
           WHWLVLKNGVEVKLQRNALSVLEHPTGN+ND+HDLDNSSCSSD+GEKDND SSS+VFHK+
Sbjct: 61  WHWLVLKNGVEVKLQRNALSVLEHPTGNENDEHDLDNSSCSSDIGEKDNDFSSSVVFHKL 120

Query: 121 SKQRVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLV 180
           SK +VRQI+PWAPSSSAK T RGS GEIQSIHMPK  TRV+LGKLGTESLWRYI+HFNLV
Sbjct: 121 SKPKVRQIKPWAPSSSAKSTSRGSYGEIQSIHMPKSGTRVRLGKLGTESLWRYIKHFNLV 180

Query: 181 NSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 224
           NSISN SRDQIL VVQRHFALQTSLNEASVMTEFIR VK+RRE
Sbjct: 181 NSISNTSRDQILQVVQRHFALQTSLNEASVMTEFIRAVKKRRE 223

[Close]

BLAST of CmoCh04G007910 vs. TAIR 10
Match: AT1G75060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 184.5 bits (467), Expect = 9.3e-47
Identity = 106/208 (50.96%), Postives = 144/208 (69.23%), Query Frame = 0


Query: 9   SRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVLKN 68
           S++QS F + S +EELSVLPRHTKV+VTGNNRTKSVL+GLQGVVKKAVGLGGWHWLVL N
Sbjct: 20  SQLQSCFGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTN 79

Query: 69  GVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKISKQRVRQI 128
           G+EVKLQRNALSVLEHPTGN+ +D+DL+    +      D     ++  HK SK+R  + 
Sbjct: 80  GIEVKLQRNALSVLEHPTGNE-EDNDLEVDHSTQWNHPSDMTTEDTLKPHK-SKKRGHRS 139

Query: 129 RPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLVNSISNASR 188
              +  +  +     S  +I SI  P+L  +V L KL   +L RY RHFNLV+++ N ++
Sbjct: 140 SRLSQKALYREVSCDSHSKISSI-TPRLNMKVDLTKLDMAALLRYWRHFNLVDALPNPTK 199

Query: 189 DQILHVVQRHFALQTSLNEASVMTEFIR 217
           +Q++ ++QRHF  Q  ++E  V+  F++
Sbjct: 200 EQLIDIIQRHFMSQ-QMDELQVIVGFVQ 223

[Close]

BLAST of CmoCh04G007910 vs. TAIR 10
Match: AT1G19330.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1). )

HSP 1 Score: 181.8 bits (460), Expect = 6.1e-46
Identity = 110/218 (50.46%), Postives = 144/218 (66.06%), Query Frame = 0


Query: 10  RIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVLKNG 69
           +IQS + + S +EELSVLPRHTKV+VTGNNRTKSVL+GLQGVVKKAVGLGGWHWLVL NG
Sbjct: 17  QIQSFYGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNG 76

Query: 70  VEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKISKQRVRQIR 129
           +EVKLQRNALSVLE PTGN+ DD DLD  +   +  +      +S    K  K ++R  R
Sbjct: 77  IEVKLQRNALSVLEPPTGNEEDD-DLDFENTQRNGSDMIVSFPASEDTLKPHKSKLRGQR 136

Query: 130 PWAPSSSAKPTGRGSCGEIQS----IHMPKLVTRVKLGKLGTESLWRYIRHFNLVNSISN 189
             +  SS K   R    + QS       P+ + +V L KL   +L  Y RHFNLV++I N
Sbjct: 137 --SSRSSHKTMSRSLSSDSQSKSSGFTPPENMQKVDLSKLEMPALLNYWRHFNLVDAIPN 196

Query: 190 ASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 224
            S++Q++ +VQRHF  Q  ++E  V+  F++  KR ++
Sbjct: 197 PSKEQLIDIVQRHFMSQ-QMDELQVIVGFVQAAKRMKK 230

[Close]

BLAST of CmoCh04G007910 vs. TAIR 10
Match: AT1G19330.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-45
Identity = 112/219 (51.14%), Postives = 144/219 (65.75%), Query Frame = 0


Query: 10  RIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVLKNG 69
           +IQS + + S +EELSVLPRHTKV+VTGNNRTKSVL+GLQGVVKKAVGLGGWHWLVL NG
Sbjct: 17  QIQSFYGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNG 76

Query: 70  VEVKLQRNALSVLEHPTGNKNDDH-DLDNSSCS-SDMGEKDNDLSSSIVFHKISKQRVRQ 129
           +EVKLQRNALSVLE PTGN+ DD  D +N+  + SDM  +D     ++  HK   +  R 
Sbjct: 77  IEVKLQRNALSVLEPPTGNEEDDDLDFENTQRNGSDMTSED-----TLKPHKSKLRGQRS 136

Query: 130 IRPWAPSSSAKPTGRGSCGEIQSI---HMPKLVTRVKLGKLGTESLWRYIRHFNLVNSIS 189
            R     SS K   R    + QS      P    +V L KL   +L  Y RHFNLV++I 
Sbjct: 137 SR-----SSHKTMSRSLSSDSQSKSSGFTPPENMKVDLSKLEMPALLNYWRHFNLVDAIP 196

Query: 190 NASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 224
           N S++Q++ +VQRHF  Q  ++E  V+  F++  KR ++
Sbjct: 197 NPSKEQLIDIVQRHFMSQ-QMDELQVIVGFVQAAKRMKK 224

[Close]

BLAST of CmoCh04G007910 vs. TAIR 10
Match: AT1G75060.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 180.3 bits (456), Expect = 1.8e-45
Identity = 106/208 (50.96%), Postives = 143/208 (68.75%), Query Frame = 0


Query: 9   SRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVLKN 68
           S++QS F + S +EELSVLPRHTKV+VTGNNRTKSVL+GLQGVVKKAVGLGGWHWLVL N
Sbjct: 20  SQLQSCFGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTN 79

Query: 69  GVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKISKQRVRQI 128
           G+EVKLQRNALSVLEHPTGN+ +D+DL+    +      D     ++  HK SK+R  + 
Sbjct: 80  GIEVKLQRNALSVLEHPTGNE-EDNDLEVDHSTQWNHPSDMTTEDTLKPHK-SKKRGHRS 139

Query: 129 RPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLVNSISNASR 188
              +  +  +     S  +I SI  P+L   V L KL   +L RY RHFNLV+++ N ++
Sbjct: 140 SRLSQKALYREVSCDSHSKISSI-TPRL-NMVDLTKLDMAALLRYWRHFNLVDALPNPTK 199

Query: 189 DQILHVVQRHFALQTSLNEASVMTEFIR 217
           +Q++ ++QRHF  Q  ++E  V+  F++
Sbjct: 200 EQLIDIIQRHFMSQ-QMDELQVIVGFVQ 222

[Close]

BLAST of CmoCh04G007910 vs. TAIR 10
Match: AT1G19330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 179.5 bits (454), Expect = 3.0e-45
Identity = 110/217 (50.69%), Postives = 142/217 (65.44%), Query Frame = 0


Query: 10  RIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVLKNG 69
           +IQS + + S +EELSVLPRHTKV+VTGNNRTKSVL+GLQGVVKKAVGLGGWHWLVL NG
Sbjct: 17  QIQSFYGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNG 76

Query: 70  VEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKISKQRVRQIR 129
           +EVKLQRNALSVLE PTGN+ DD DLD  +   +  +      +S    K  K ++R  R
Sbjct: 77  IEVKLQRNALSVLEPPTGNEEDD-DLDFENTQRNGSDMIVSFPASEDTLKPHKSKLRGQR 136

Query: 130 PWAPSSSAKPTGRGSCGEIQSI---HMPKLVTRVKLGKLGTESLWRYIRHFNLVNSISNA 189
             +  SS K   R    + QS      P    +V L KL   +L  Y RHFNLV++I N 
Sbjct: 137 --SSRSSHKTMSRSLSSDSQSKSSGFTPPENMKVDLSKLEMPALLNYWRHFNLVDAIPNP 196

Query: 190 SRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 224
           S++Q++ +VQRHF  Q  ++E  V+  F++  KR ++
Sbjct: 197 SKEQLIDIVQRHFMSQ-QMDELQVIVGFVQAAKRMKK 229

The following BLAST results are available for this feature:

BLAST of CmoCh04G007910 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G007910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FR82	1.5e-121	100.00	uncharacterized protein LOC111448038 OS=Cucurbita moschata OX=3662 GN=LOC1114480...	[more]
A0A6J1IZT1	1.7e-120	98.65	uncharacterized protein LOC111481424 OS=Cucurbita maxima OX=3661 GN=LOC111481424...	[more]
A0A6J1C548	1.1e-108	91.52	uncharacterized protein LOC111008453 isoform X4 OS=Momordica charantia OX=3673 G...	[more]
A0A0A0KUM7	4.3e-108	89.69	SAP30_Sin3_bdg domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G047...	[more]
A0A1S3BU28	5.6e-108	90.13	uncharacterized protein LOC103493170 OS=Cucumis melo OX=3656 GN=LOC103493170 PE=...	[more]

BLAST of CmoCh04G007910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943250.1	3.2e-121	100.00	uncharacterized protein LOC111448038 [Cucurbita moschata] >XP_022943251.1 unchar...	[more]
XP_023534417.1	1.2e-120	99.10	uncharacterized protein LOC111795704 [Cucurbita pepo subsp. pepo] >KAG6600567.1 ...	[more]
XP_022982598.1	3.5e-120	98.65	uncharacterized protein LOC111481424 [Cucurbita maxima] >XP_022982606.1 uncharac...	[more]
XP_022136865.1	2.3e-108	91.52	uncharacterized protein LOC111008453 isoform X4 [Momordica charantia]	[more]
XP_004146519.1	8.9e-108	89.69	uncharacterized protein LOC101209634 [Cucumis sativus] >XP_011653177.1 uncharact...	[more]

BLAST of CmoCh04G007910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75060.1	9.3e-47	50.96	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G19330.3	6.1e-46	50.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G19330.2	1.3e-45	51.14	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G75060.2	1.8e-45	50.96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G19330.1	3.0e-45	50.69	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038291	SAP30, C-terminal domain superfamily	GENE3D	6.10.160.20		coord: 147..223 e-value: 6.9E-17 score: 63.1
IPR025718	Histone deacetylase complex subunit SAP30, Sin3 binding domain	PFAM	PF13867	SAP30_Sin3_bdg	coord: 165..219 e-value: 1.6E-16 score: 60.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..103
None	No IPR available	PANTHER	PTHR13286:SF8	OS04G0166600 PROTEIN	coord: 1..222
IPR024145	Histone deacetylase complex subunit SAP30/SAP30-like	PANTHER	PTHR13286	SAP30	coord: 1..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G007910.1	CmoCh04G007910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000118	histone deacetylase complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003712	transcription coregulator activity