CmoCh04G007320 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G007320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr04: 3641490 .. 3641894 (+)
RNA-Seq Expression	CmoCh04G007320
Synteny	CmoCh04G007320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGACGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGGTGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTATCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

mRNA sequence

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGACGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGGTGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTATCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

Coding sequence (CDS)

ATGATCAGCAACTTGATTTCAAGCTTGAACAAAAAATTGCAGGCGGTTGAAATCAGCAATCGCTGCAGACGAACGAAGAAGACGACGACGACGACGACGTACGTTTACAGAGACGATCTGAACAAGAAGAAGCAGTCGCCGTCGTCGCAGCAGCAACCGGAAATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCAGAGACGGAGCCGGTGATAATCGCCATCGGTGCAGAGGAGGAAACAGAGAAGAAGAGAGTGGTGAGAATAACGGTGAAAGTAACGAAGCAAGAAGCGAATCGGATGCTATCGAGGTGCTCCGAAGGCGGCGTTCTGGAACTCGGAGATGCGGCTTGTGAGCTCATGCGGATTCCTGCGGCTCGAGTTAGGTCTTCTATGGTGGCCAATTGA

Protein sequence

MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSPSSQQQPEIKKVKKRVRFAETEPVIIAIGAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELMRIPAARVRSSMVAN

Homology

[Close]

BLAST of CmoCh04G007320 vs. ExPASy TrEMBL
Match: A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.9e-40
Identity = 110/145 (75.86%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP-----SSQQQP-E 60
           MISNLISSLNKKLQAVEISNRC+RTKK    TTYVYRDDL KKK SP     S Q QP E
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKK----TTYVYRDDLTKKKHSPPLSSSSPQHQPAE 60

Query: 61  IKKVKKRVRFAETEPVIIAIGA-----EEETEKKRVVRITVKVTKQEANRMLSRCSEGGV 120
           IKKVKKRVRFA+TEPVIIAI       EEETEKK VVRITVK+TKQEANRMLSRCS  GV
Sbjct: 61  IKKVKKRVRFADTEPVIIAISTDREEEEEETEKK-VVRITVKLTKQEANRMLSRCSNDGV 120

Query: 121 LELGDAACELMRIPAARVRSSMVAN 135
           LE GD A EL+RIP  RV SS+VAN
Sbjct: 121 LEFGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of CmoCh04G007320 vs. ExPASy TrEMBL
Match: A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.9e-40
Identity = 110/145 (75.86%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP-----SSQQQP-E 60
           MISNLISSLNKKLQAVEISNRC+RTKK    TTYVYRDDL KKK SP     S Q QP E
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKK----TTYVYRDDLTKKKHSPPLSSSSPQHQPAE 60

Query: 61  IKKVKKRVRFAETEPVIIAIGA-----EEETEKKRVVRITVKVTKQEANRMLSRCSEGGV 120
           IKKVKKRVRFA+TEPVIIAI       EEETEKK VVRITVK+TKQEANRMLSRCS  GV
Sbjct: 61  IKKVKKRVRFADTEPVIIAISTDREEEEEETEKK-VVRITVKLTKQEANRMLSRCSNDGV 120

Query: 121 LELGDAACELMRIPAARVRSSMVAN 135
           LE GD A EL+RIP  RV SS+VAN
Sbjct: 121 LEFGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of CmoCh04G007320 vs. ExPASy TrEMBL
Match: A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.5e-39
Identity = 109/139 (78.42%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKK--QSPS-SQQQPEIKK 60
           MI NLISSLNKKLQAVEISNRCRRTKKTT     VYR D++KKK  QSPS SQ +PEI+K
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTN----VYRRDMSKKKQPQSPSPSQGKPEIEK 60

Query: 61  VKKRVRFAETEPVIIAI-----GAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLEL 120
           VKKRVRFA+TEPVIIAI       EEETEKK VVRITVK+TKQEANRMLSRCS+GGVLE 
Sbjct: 61  VKKRVRFADTEPVIIAIDREERSTEEETEKK-VVRITVKLTKQEANRMLSRCSDGGVLEF 120

Query: 121 GDAACELMRIPAARVRSSM 132
           GD A ELMRIPAARV SSM
Sbjct: 121 GDVASELMRIPAARVSSSM 134

[Close]

BLAST of CmoCh04G007320 vs. ExPASy TrEMBL
Match: A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.4e-39
Identity = 105/146 (71.92%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP-----SSQQQP-E 60
           MISNLISSLNKKLQAVEIS+RC+RTKK    T YVYRD+L KK  SP     S Q QP E
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKK----TAYVYRDNLTKKNHSPPSSSSSPQHQPEE 60

Query: 61  IKKVKKRVRFAETEPVIIAIGAEEETE------KKRVVRITVKVTKQEANRMLSRCSEGG 120
           IKKVKKRVRFA+TEPVIIAI  + E E      +K+VVRITVK+TKQEANRMLSRCS GG
Sbjct: 61  IKKVKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGG 120

Query: 121 VLELGDAACELMRIPAARVRSSMVAN 135
           VLE GD A ELMRIP  RVRSS+VAN
Sbjct: 121 VLEFGDVASELMRIPPTRVRSSLVAN 142

[Close]

BLAST of CmoCh04G007320 vs. ExPASy TrEMBL
Match: A0A6J1EU86 (uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC111437608 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.4e-39
Identity = 106/137 (77.37%), Postives = 113/137 (82.48%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP-SSQQQPEIKKVK 60
           MI NLISSLNKKLQAVEISNRCRRTKKTT     VYR D++KKKQ    SQ +PEI+KVK
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTN----VYRGDMSKKKQPQLPSQGKPEIEKVK 60

Query: 61  KRVRFAETEPVIIAI-----GAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGD 120
           KRVRFA+TEPVIIAI       EEETEKK VVRITVK+TKQEANRMLSRCS+GGVLE GD
Sbjct: 61  KRVRFADTEPVIIAIDREERSTEEETEKK-VVRITVKLTKQEANRMLSRCSDGGVLEFGD 120

Query: 121 AACELMRIPAARVRSSM 132
            A ELMRIPAARV SSM
Sbjct: 121 VASELMRIPAARVSSSM 132

[Close]

BLAST of CmoCh04G007320 vs. NCBI nr
Match: KAG6600516.1 (hypothetical protein SDJN03_05749, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031155.1 hypothetical protein SDJN02_05195, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242.3 bits (617), Expect = 2.4e-60
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSPSSQQQPEIKKVKK 60
           MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSPSSQQQPEIKKVKK
Sbjct: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSPSSQQQPEIKKVKK 60

Query: 61  RVRFAETEPVIIAIGAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELM 120
           RVRFAETEPVIIAI AEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELM
Sbjct: 61  RVRFAETEPVIIAIDAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGDAACELM 120

Query: 121 RIPAARVRSSMVAN 135
           RIPAARVRSSMVAN
Sbjct: 121 RIPAARVRSSMVAN 134

[Close]

BLAST of CmoCh04G007320 vs. NCBI nr
Match: XP_038906331.1 (uncharacterized protein LOC120092170 [Benincasa hispida])

HSP 1 Score: 190.7 bits (483), Expect = 8.4e-45
Identity = 115/143 (80.42%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP---SSQQQPEIKK 60
           MISN I SLNKKLQAVEISNRCRRTKK    TTYVYRDDL+KKKQSP   SSQ QPEIKK
Sbjct: 1   MISNFILSLNKKLQAVEISNRCRRTKK----TTYVYRDDLSKKKQSPPPSSSQPQPEIKK 60

Query: 61  VKKRVRFAETEPVIIAI------GAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLE 120
           VKKRVRFA+TEPVIIAI        EEETEKK VVRITVK+TK+EANRMLSRCS+GGVLE
Sbjct: 61  VKKRVRFADTEPVIIAITDKEERSTEEETEKK-VVRITVKLTKEEANRMLSRCSDGGVLE 120

Query: 121 LGDAACELMRIPAARVRSSMVAN 135
            GD ACELMRIPA RV SSMVAN
Sbjct: 121 FGDVACELMRIPATRVSSSMVAN 138

[Close]

BLAST of CmoCh04G007320 vs. NCBI nr
Match: XP_008451951.1 (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 uncharacterized protein E6C27_scaffold74G001940 [Cucumis melo var. makuwa] >TYK16569.1 uncharacterized protein E5676_scaffold21G003900 [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 8.1e-40
Identity = 110/145 (75.86%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP-----SSQQQP-E 60
           MISNLISSLNKKLQAVEISNRC+RTKK    TTYVYRDDL KKK SP     S Q QP E
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKK----TTYVYRDDLTKKKHSPPLSSSSPQHQPAE 60

Query: 61  IKKVKKRVRFAETEPVIIAIGA-----EEETEKKRVVRITVKVTKQEANRMLSRCSEGGV 120
           IKKVKKRVRFA+TEPVIIAI       EEETEKK VVRITVK+TKQEANRMLSRCS  GV
Sbjct: 61  IKKVKKRVRFADTEPVIIAISTDREEEEEETEKK-VVRITVKLTKQEANRMLSRCSNDGV 120

Query: 121 LELGDAACELMRIPAARVRSSMVAN 135
           LE GD A EL+RIP  RV SS+VAN
Sbjct: 121 LEFGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of CmoCh04G007320 vs. NCBI nr
Match: XP_022985430.1 (uncharacterized protein LOC111483436 [Cucurbita maxima])

HSP 1 Score: 172.2 bits (435), Expect = 3.1e-39
Identity = 109/139 (78.42%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKK--QSPS-SQQQPEIKK 60
           MI NLISSLNKKLQAVEISNRCRRTKKTT     VYR D++KKK  QSPS SQ +PEI+K
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTN----VYRRDMSKKKQPQSPSPSQGKPEIEK 60

Query: 61  VKKRVRFAETEPVIIAI-----GAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLEL 120
           VKKRVRFA+TEPVIIAI       EEETEKK VVRITVK+TKQEANRMLSRCS+GGVLE 
Sbjct: 61  VKKRVRFADTEPVIIAIDREERSTEEETEKK-VVRITVKLTKQEANRMLSRCSDGGVLEF 120

Query: 121 GDAACELMRIPAARVRSSM 132
           GD A ELMRIPAARV SSM
Sbjct: 121 GDVASELMRIPAARVSSSM 134

[Close]

BLAST of CmoCh04G007320 vs. NCBI nr
Match: KAG7015140.1 (hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.4 bits (433), Expect = 5.3e-39
Identity = 107/140 (76.43%), Postives = 114/140 (81.43%), Query Frame = 0


Query: 1   MISNLISSLNKKLQAVEISNRCRRTKKTTTTTTYVYRDDLNKKKQSP-SSQQQPEIKKVK 60
           MI NLISSLNKKLQAVEISNRCRRTKKTT     VYR D++KKKQ    SQ +PEI+KVK
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTN----VYRGDMSKKKQPQLPSQGKPEIEKVK 60

Query: 61  KRVRFAETEPVIIAI-----GAEEETEKKRVVRITVKVTKQEANRMLSRCSEGGVLELGD 120
           KRVRFA+TEPVIIAI       EEETEKK VVRITVK+TKQEANRMLSRCS+GGVLE  D
Sbjct: 61  KRVRFADTEPVIIAIDREERSTEEETEKK-VVRITVKLTKQEANRMLSRCSDGGVLEFRD 120

Query: 121 AACELMRIPAARVRSSMVAN 135
            A ELMRIPAARV SSMV N
Sbjct: 121 VASELMRIPAARVSSSMVVN 135

The following BLAST results are available for this feature:

BLAST of CmoCh04G007320 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G007320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D246	3.9e-40	75.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BS40	3.9e-40	75.86	uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=...	[more]
A0A6J1JBA8	1.5e-39	78.42	uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436...	[more]
A0A0A0KYE1	4.4e-39	71.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1	[more]
A0A6J1EU86	4.4e-39	77.37	uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC1114376...	[more]

BLAST of CmoCh04G007320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600516.1	2.4e-60	99.25	hypothetical protein SDJN03_05749, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038906331.1	8.4e-45	80.42	uncharacterized protein LOC120092170 [Benincasa hispida]	[more]
XP_008451951.1	8.1e-40	75.86	PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 unc...	[more]
XP_022985430.1	3.1e-39	78.42	uncharacterized protein LOC111483436 [Cucurbita maxima]	[more]
KAG7015140.1	5.3e-39	76.43	hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh04G007320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..59
None	No IPR available	PANTHER	PTHR36782:SF1	BNAC03G62080D PROTEIN	coord: 1..132
None	No IPR available	PANTHER	PTHR36782	BNAC03G62080D PROTEIN	coord: 1..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G007320.1	CmoCh04G007320.1	mRNA