CmoCh04G007290 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G007290
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Long chain acyl-CoA synthetase 4-like protein
Location	Cmo_Chr04: 3631228 .. 3632949 (-)
RNA-Seq Expression	CmoCh04G007290
Synteny	CmoCh04G007290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACTCCAAATCCCAATCAAACCTCCTTAATATTATTTCACTGAAACGACGTCGCTGCTTTCCCTATATATGCCCCCTCCTTTGCGTTGTTTCCCTTCCAAGTCTCCAATTCCTTCCGCGTTCAGTAATCGACTCTACCGCGAAGCTCAGGGATCTTTCATCTCTTTCGTCGAGGAACTTCGGAAGTTCTCTGCCCTCTGGTGTTTCTACGATCGTTTTCTCGAGCGACGAATTATCTTATCATCAAGAGGTGAGTTCTTTATTATCTGTTTGGTTCTATCGTTACGTCGATGGAAACCCTAGATGCTTGTTTTCGATTTTTTGGTTGTTGGTTGCTGTTCGATGTTTTGGGGGAGACGTAGTGGAGTTGTTATCCTCCTAAGTTGTGTACGAATGTGGTATGAGGAGATTTCTTGGTTTTGTTAATGTTTTATCGTTGAGGATGTGTAGATTACTTGGATTCTTTTTCAGTGGAAACTTAACCAGCGATTATTTTCCTCCATTTGTTTGCTTGTTATGATTTAATTTCTTTTTCTTCGGGGATTCTTCGAGTTTCTTGAGGCCTTGTAAATTTATTGTATTTATTGACAACTTTTAATTCTGAAACTCAGACGGGAACCTGATCGGTTTCTTGAGTTTTCAGAGGTAATTTGTCCAAATTTATTCAGTAGGCATCTATTAATTATTTTTTTAAACCTACCGTTGCGAGGCACACTTGTTTTGTGGACCTTAGACCTATAAGCTATTTGAGCCACCTTGTTATTTAATGTTTTTTCTCTTGAGGATGTGTCCTTATTGATCTAATGGCGAATTTATTCCAATTGTTTCTTTCCTTGGTTCCTCAGTAACCCTCATTTTTTTAATCTTATATTAGATGGCGGCTAAACCACTTACTACTGAAGCAATTGCCATAACTGAGAAGAAGATGGACATGGCTTTAGGTTGGCCTTCAAATTCTTGCATCGGTTTCCCCGTTTGTTTGAAAATTTATTGATTTTTCTTTTTCTACATCTTCTTGTTGAAATAGACGACATTATCAAGATGTCCAAAAATACTGGAAATAAAGGAAGGAAGCAAAGAAGGTTTCCGGTAAGAACCTGTTTTCTTTTGCATGCGTTTAACCCGAGCAATTTATTGTTGAAATTGGAAGTTTCCTTTTTATTATTATCTAATAATGATTCGTCTTTTATATGCAGAACAAAATGCAGAAATTTCCAAATAACGCCACTCAGGATAGACCTAGGAAGTTGCAGCGATTCATGGACGCTAGAACCTCTCTAAGACAGGTTTGTACAGTTTTCAACTTGATTATCGTTTATTTTACTTATTTTGTATGACTGGTCCTGAATTTTCATTTTATTTAGGGGGCTTTGGCCAAAAGGAGGTCAAATTTTCAAGGGAATCAGTTTGCATTGGCAACCGAGGTTGCAAGAACGGCTGCAGTTGCTCCTATTCGGCCTAGAGCCTTTAACCGTAGGGTGCCCAATTGGAAGAAGACAAGGTATTGTCTGTGCTTATTGTTAGTCTACGCAAGCTTCTCATTGTGAATTATGATTATAGTTTTTACTCCAATTCTAATTTAGAAACGAACAGTTGAATTTTGTGGATGGTTGGTGTGATGTGATATTTCATGATATGGCAGGTAAATTGCGTTTATGAAAAATTGGTGACTTCTACAATGTCCATCAAGTTTTACTATATGAAGTTAGCGCAGTAA

mRNA sequence

ATGGCGGACTCCAAATCCCAATCAAACCTCCTTAATATTATTTCACTGAAACGACGTCGCTGCTTTCCCTATATATGCCCCCTCCTTTGCGTTGTTTCCCTTCCAAGTCTCCAATTCCTTCCGCGTTCAGTAATCGACTCTACCGCGAAGCTCAGGGATCTTTCATCTCTTTCGTCGAGGAACTTCGGAAGTTCTCTGCCCTCTGGTGTTTCTACGATCGTTTTCTCGAGCGACGAATTATCTTATCATCAAGAGATGGCGGCTAAACCACTTACTACTGAAGCAATTGCCATAACTGAGAAGAAGATGGACATGGCTTTAGACGACATTATCAAGATGTCCAAAAATACTGGAAATAAAGGAAGGAAGCAAAGAAGGTTTCCGAACAAAATGCAGAAATTTCCAAATAACGCCACTCAGGATAGACCTAGGAAGTTGCAGCGATTCATGGACGCTAGAACCTCTCTAAGACAGGGGGCTTTGGCCAAAAGGAGGTCAAATTTTCAAGGGAATCAGTTTGCATTGGCAACCGAGGTTGCAAGAACGGCTGCAGTTGCTCCTATTCGGCCTAGAGCCTTTAACCGTAGGGTGCCCAATTGGAAGAAGACAAGGTATTGTCTGTGCTTATTGTTAGTAAATTGCGTTTATGAAAAATTGGTGACTTCTACAATGTCCATCAAGTTTTACTATATGAAGTTAGCGCAGTAA

Coding sequence (CDS)

ATGGCGGACTCCAAATCCCAATCAAACCTCCTTAATATTATTTCACTGAAACGACGTCGCTGCTTTCCCTATATATGCCCCCTCCTTTGCGTTGTTTCCCTTCCAAGTCTCCAATTCCTTCCGCGTTCAGTAATCGACTCTACCGCGAAGCTCAGGGATCTTTCATCTCTTTCGTCGAGGAACTTCGGAAGTTCTCTGCCCTCTGGTGTTTCTACGATCGTTTTCTCGAGCGACGAATTATCTTATCATCAAGAGATGGCGGCTAAACCACTTACTACTGAAGCAATTGCCATAACTGAGAAGAAGATGGACATGGCTTTAGACGACATTATCAAGATGTCCAAAAATACTGGAAATAAAGGAAGGAAGCAAAGAAGGTTTCCGAACAAAATGCAGAAATTTCCAAATAACGCCACTCAGGATAGACCTAGGAAGTTGCAGCGATTCATGGACGCTAGAACCTCTCTAAGACAGGGGGCTTTGGCCAAAAGGAGGTCAAATTTTCAAGGGAATCAGTTTGCATTGGCAACCGAGGTTGCAAGAACGGCTGCAGTTGCTCCTATTCGGCCTAGAGCCTTTAACCGTAGGGTGCCCAATTGGAAGAAGACAAGGTATTGTCTGTGCTTATTGTTAGTAAATTGCGTTTATGAAAAATTGGTGACTTCTACAATGTCCATCAAGTTTTACTATATGAAGTTAGCGCAGTAA

Protein sequence

MADSKSQSNLLNIISLKRRRCFPYICPLLCVVSLPSLQFLPRSVIDSTAKLRDLSSLSSRNFGSSLPSGVSTIVFSSDELSYHQEMAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRKLQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTRYCLCLLLVNCVYEKLVTSTMSIKFYYMKLAQ

Homology

[Close]

BLAST of CmoCh04G007290 vs. ExPASy TrEMBL
Match: A0A6J1FPB6 (uncharacterized protein LOC111447019 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447019 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.1e-56
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 86  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 145
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60

Query: 146 LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 205
           LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR
Sbjct: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 119

[Close]

BLAST of CmoCh04G007290 vs. ExPASy TrEMBL
Match: A0A6J1FLY6 (uncharacterized protein LOC111447019 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447019 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.1e-56
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 86  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 145
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60

Query: 146 LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 205
           LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR
Sbjct: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 119

[Close]

BLAST of CmoCh04G007290 vs. ExPASy TrEMBL
Match: A0A6J1J5N5 (uncharacterized protein LOC111481570 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481570 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 3.8e-54
Identity = 115/119 (96.64%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 86  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 145
           MA KPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK
Sbjct: 1   MATKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60

Query: 146 LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 205
           LQRFMDARTSLRQGA AKRRSNFQGNQFALATEVAR AAVAPIRPRAFNR VPNWKKTR
Sbjct: 61  LQRFMDARTSLRQGAFAKRRSNFQGNQFALATEVARKAAVAPIRPRAFNRWVPNWKKTR 119

[Close]

BLAST of CmoCh04G007290 vs. ExPASy TrEMBL
Match: A0A6J1IXQ4 (uncharacterized protein LOC111481570 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481570 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 3.8e-54
Identity = 115/119 (96.64%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 86  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 145
           MA KPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK
Sbjct: 1   MATKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60

Query: 146 LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 205
           LQRFMDARTSLRQGA AKRRSNFQGNQFALATEVAR AAVAPIRPRAFNR VPNWKKTR
Sbjct: 61  LQRFMDARTSLRQGAFAKRRSNFQGNQFALATEVARKAAVAPIRPRAFNRWVPNWKKTR 119

[Close]

BLAST of CmoCh04G007290 vs. ExPASy TrEMBL
Match: A0A5A7TPS5 (Pentatricopeptide repeat (PPR) superfamily protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001910 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 3.5e-52
Identity = 111/119 (93.28%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 86  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 145
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRR PNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRLPNKMQKFPNNATQDRPRK 60

Query: 146 LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 205
           LQRFMD+R+SLRQGALA RRSNFQGNQFALATEVAR AAVAPIRPRAF RR PNW KTR
Sbjct: 61  LQRFMDSRSSLRQGALANRRSNFQGNQFALATEVARKAAVAPIRPRAFTRRAPNWNKTR 119

[Close]

BLAST of CmoCh04G007290 vs. NCBI nr
Match: KAG6600514.1 (Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269.2 bits (687), Expect = 3.3e-68
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 65  SLPSGVSTIVFSSDELSYHQEMAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQ 124
           SLPSGVSTIVFSSDELSYHQEMAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQ
Sbjct: 270 SLPSGVSTIVFSSDELSYHQEMAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQ 329

Query: 125 RRFPNKMQKFPNNATQDRPRKLQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAA 184
           RRFPNKMQKFPNNATQDRPRKLQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAA
Sbjct: 330 RRFPNKMQKFPNNATQDRPRKLQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAA 389

Query: 185 VAPIRPRAFNRRVPNWKKTR 205
           VAPIRPRAFNRRVPNWKKTR
Sbjct: 390 VAPIRPRAFNRRVPNWKKTR 409

[Close]

BLAST of CmoCh04G007290 vs. NCBI nr
Match: XP_022941746.1 (uncharacterized protein LOC111447019 isoform X2 [Cucurbita moschata])

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-56
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 86  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 145
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60

Query: 146 LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 205
           LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR
Sbjct: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 119

[Close]

BLAST of CmoCh04G007290 vs. NCBI nr
Match: XP_022941743.1 (uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata] >XP_022941744.1 uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata] >XP_022941747.1 uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata])

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-56
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 86  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 145
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60

Query: 146 LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 205
           LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR
Sbjct: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 119

[Close]

BLAST of CmoCh04G007290 vs. NCBI nr
Match: KAG7031152.1 (hypothetical protein SDJN02_05192, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.9 bits (585), Expect = 2.2e-56
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 86  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 145
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 60

Query: 146 LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 205
           LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR
Sbjct: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 119

[Close]

BLAST of CmoCh04G007290 vs. NCBI nr
Match: XP_023528285.1 (uncharacterized protein LOC111791234 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.0 bits (580), Expect = 8.3e-56
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 86  MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGNKGRKQRRFPNKMQKFPNNATQDRPRK 145
           MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTG+KGRKQRRFPNKMQKFPNNATQDRPRK
Sbjct: 1   MAAKPLTTEAIAITEKKMDMALDDIIKMSKNTGSKGRKQRRFPNKMQKFPNNATQDRPRK 60

Query: 146 LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 205
           LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR
Sbjct: 61  LQRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFNRRVPNWKKTR 119

[Close]

BLAST of CmoCh04G007290 vs. TAIR 10
Match: AT4G10970.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-23
Identity = 67/120 (55.83%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 89  KPLTTEAIAITEKKMDMALDDIIKMSK-NTG-NKGRKQRRFPNKMQKFPNNATQDRPRKL 148
           KP+TTE +A+TEKKMDM+LD+IIKM K NT  NKG+KQR   NK +KF + A ++   K 
Sbjct: 5   KPITTETVALTEKKMDMSLDEIIKMEKSNTNVNKGKKQRVL-NKKEKF-SGAAKNSAVKA 64

Query: 149 QRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFN-RRVPNWKKTRY 206
           QR+MD+R+ +RQGA AK+RSNFQGNQF + T VAR AA A  R R +N  R+ N  ++R+
Sbjct: 65  QRYMDSRSDVRQGAFAKKRSNFQGNQFPVTTTVARKAASATPRGRPYNGGRMTNTNQSRF 122

[Close]

BLAST of CmoCh04G007290 vs. TAIR 10
Match: AT4G10970.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-23
Identity = 67/120 (55.83%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 89  KPLTTEAIAITEKKMDMALDDIIKMSK-NTG-NKGRKQRRFPNKMQKFPNNATQDRPRKL 148
           KP+TTE +A+TEKKMDM+LD+IIKM K NT  NKG+KQR   NK +KF + A ++   K 
Sbjct: 5   KPITTETVALTEKKMDMSLDEIIKMEKSNTNVNKGKKQRVL-NKKEKF-SGAAKNSAVKA 64

Query: 149 QRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFN-RRVPNWKKTRY 206
           QR+MD+R+ +RQGA AK+RSNFQGNQF + T VAR AA A  R R +N  R+ N  ++R+
Sbjct: 65  QRYMDSRSDVRQGAFAKKRSNFQGNQFPVTTTVARKAASATPRGRPYNGGRMTNTNQSRF 122

[Close]

BLAST of CmoCh04G007290 vs. TAIR 10
Match: AT4G10970.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-23
Identity = 67/120 (55.83%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 89  KPLTTEAIAITEKKMDMALDDIIKMSK-NTG-NKGRKQRRFPNKMQKFPNNATQDRPRKL 148
           KP+TTE +A+TEKKMDM+LD+IIKM K NT  NKG+KQR   NK +KF + A ++   K 
Sbjct: 5   KPITTETVALTEKKMDMSLDEIIKMEKSNTNVNKGKKQRVL-NKKEKF-SGAAKNSAVKA 64

Query: 149 QRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFN-RRVPNWKKTRY 206
           QR+MD+R+ +RQGA AK+RSNFQGNQF + T VAR AA A  R R +N  R+ N  ++R+
Sbjct: 65  QRYMDSRSDVRQGAFAKKRSNFQGNQFPVTTTVARKAASATPRGRPYNGGRMTNTNQSRF 122

[Close]

BLAST of CmoCh04G007290 vs. TAIR 10
Match: AT4G10970.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-23
Identity = 67/120 (55.83%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 89  KPLTTEAIAITEKKMDMALDDIIKMSK-NTG-NKGRKQRRFPNKMQKFPNNATQDRPRKL 148
           KP+TTE +A+TEKKMDM+LD+IIKM K NT  NKG+KQR   NK +KF + A ++   K 
Sbjct: 5   KPITTETVALTEKKMDMSLDEIIKMEKSNTNVNKGKKQRVL-NKKEKF-SGAAKNSAVKA 64

Query: 149 QRFMDARTSLRQGALAKRRSNFQGNQFALATEVARTAAVAPIRPRAFN-RRVPNWKKTRY 206
           QR+MD+R+ +RQGA AK+RSNFQGNQF + T VAR AA A  R R +N  R+ N  ++R+
Sbjct: 65  QRYMDSRSDVRQGAFAKKRSNFQGNQFPVTTTVARKAASATPRGRPYNGGRMTNTNQSRF 122

[Close]

BLAST of CmoCh04G007290 vs. TAIR 10
Match: AT4G23910.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10970.4); Has 52 Blast hits to 52 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.5 bits (210), Expect = 6.2e-17
Identity = 55/110 (50.00%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 90  PLTTEAIAITEKKMDMALDDIIKMS--KNTGNKGRKQRRFPNKMQKFPNNATQDRPRKLQ 149
           PL  E IA+TEKK+ MALDDIIK++  K   NKG+K RR  NK Q F N A ++    ++
Sbjct: 6   PLIAETIALTEKKVAMALDDIIKLAKRKTNVNKGKKPRREKNKNQNF-NGAARNNTSNVR 65

Query: 150 RFMDARTSLRQGALAKRRSNFQGNQFALATEVAR---TAAVAPIRPRAFN 195
             M++ +++RQGA+ KRRS FQG QF + T +AR   TAA    R RAFN
Sbjct: 66  HHMNSLSAVRQGAVGKRRSRFQGIQFPVTTNIARKASTAAPLDFRGRAFN 114

The following BLAST results are available for this feature:

BLAST of CmoCh04G007290 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G007290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FPB6	1.1e-56	100.00	uncharacterized protein LOC111447019 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FLY6	1.1e-56	100.00	uncharacterized protein LOC111447019 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J5N5	3.8e-54	96.64	uncharacterized protein LOC111481570 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IXQ4	3.8e-54	96.64	uncharacterized protein LOC111481570 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7TPS5	3.5e-52	93.28	Pentatricopeptide repeat (PPR) superfamily protein isoform 2 OS=Cucumis melo var...	[more]

BLAST of CmoCh04G007290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600514.1	3.3e-68	100.00	Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial, partial [Cucurbit...	[more]
XP_022941746.1	2.2e-56	100.00	uncharacterized protein LOC111447019 isoform X2 [Cucurbita moschata]	[more]
XP_022941743.1	2.2e-56	100.00	uncharacterized protein LOC111447019 isoform X1 [Cucurbita moschata] >XP_0229417...	[more]
KAG7031152.1	2.2e-56	100.00	hypothetical protein SDJN02_05192, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023528285.1	8.3e-56	99.16	uncharacterized protein LOC111791234 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh04G007290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10970.1	1.2e-23	55.83	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G10970.2	1.2e-23	55.83	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G10970.3	1.2e-23	55.83	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G10970.4	1.2e-23	55.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G23910.1	6.2e-17	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF07078	FYTT	coord: 101..172 e-value: 2.8E-4 score: 20.4
None	No IPR available	PANTHER	PTHR36048	RIBOSOME MATURATION FACTOR	coord: 86..204
None	No IPR available	PANTHER	PTHR36048:SF1	RIBOSOME MATURATION FACTOR	coord: 86..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G007290.1	CmoCh04G007290.1	mRNA