CmoCh04G006550 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G006550
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 3245724 .. 3246650 (-)
RNA-Seq ExpressionCmoCh04G006550
SyntenyCmoCh04G006550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAATGCTTTATTTGAGCTAAAGATTCAATCTTGTTGCGCCGACAGGGCGTGGCAAAACCCAAAGGCGAGTGAATTTGACTCAATTCTCCCAAATTCTTTCAAGCCCTACTTTCCCCAATCGAAGGAACCCCCTTCCCCACTCGCTCAAATCCTCCGCTCGCTGCTACAGCCTATTGCTTCGCTTCCCGGATTCTTAAGAAACCGTTCTTTCTTCAGGTTTCTTTCAACTTCATGCCAGCCTCTTCTCTCTCGTTTTTGTTTTACTTTTAAGTCTTAATTTGCTGGGTTTCTGTGTCATTTTTCTTCGATCCTGATGATGTTTTGATGGTGTTTTCTTATGGGCTCCCCCTCCTATATCTGTTTTGTCGCTGAGGGAGTATCGATGGAGAATTGTATATATGCTTAGCGTTCTTAATGGGGTTTGGGAAATGTGCCATTCAATAGTTCCTGCTCCTTCCCCACCCACTTAGTTTTAGCTAAGCCGAGAAGAGTTTTTCTGTATGTTTGGTTTCTCTATCAGAGTTGGGAAATTATGTCCTTATAGTACTCCGTACTTCTTGAATTGGGTTTCTGTCGATTATCACTTCTAGACTTTTGTCTCTGAGTTGCTAACAAATCTCTGTGCTTGTAGTCAGCGTAAAAGTTGACGTTTTAATGAACTTTCCTTTCAAGAATCTTGCGACATTCGGTCGGGTTTGTCTACAGGATTTCTAAAAAACAGACAAATTGCAGTTCTCACAGATTTTAATGTCAGTCGTAGTGTAGATTTTGTAACTTATGGAGGACTATATGTTTAAAGTATTCGATGCCTCATTTGTTTGTAATTCGATGTCCCTGTTTTTGAAGTCTTTAATCTTGTGAATGTTGGCATTTGGTAATCTACATACTAAGTTTATTTGATTTATTGAACAGGGTGAATTAA

mRNA sequence

ATGTGGAATGCTTTATTTGAGCTAAAGATTCAATCTTGTTGCGCCGACAGGGCGTGGCAAAACCCAAAGGCGAGTGAATTTGACTCAATTCTCCCAAATTCTTTCAAGCCCTACTTTCCCCAATCGAAGGAACCCCCTTCCCCACTCGCTCAAATCCTCCGCTCGCTGCTACAGCCTATTGCTTCGCTTCCCGGATTCTTAAGAAACCGTTCTTTCTTCAGGGTGAATTAA

Coding sequence (CDS)

ATGTGGAATGCTTTATTTGAGCTAAAGATTCAATCTTGTTGCGCCGACAGGGCGTGGCAAAACCCAAAGGCGAGTGAATTTGACTCAATTCTCCCAAATTCTTTCAAGCCCTACTTTCCCCAATCGAAGGAACCCCCTTCCCCACTCGCTCAAATCCTCCGCTCGCTGCTACAGCCTATTGCTTCGCTTCCCGGATTCTTAAGAAACCGTTCTTTCTTCAGGGTGAATTAA

Protein sequence

MWNALFELKIQSCCADRAWQNPKASEFDSILPNSFKPYFPQSKEPPSPLAQILRSLLQPIASLPGFLRNRSFFRVN
Homology
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BLAST of CmoCh04G006550 vs. NCBI nr
Match: KAG6600442.1 (Protein FAR-RED ELONGATED HYPOCOTYL 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-06
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 17  RAWQNPKASEFDSILPNSFKPYFPQSKE 45
           RAWQNPKASEFDSILPNSFKPYFPQS E
Sbjct: 800 RAWQNPKASEFDSILPNSFKPYFPQSSE 827

The following BLAST results are available for this feature:
BLAST of CmoCh04G006550 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G006550 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G006550 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600442.12.6e-0696.43Protein FAR-RED ELONGATED HYPOCOTYL 3, partial [Cucurbita argyrosperma subsp. so... [more]
BLAST of CmoCh04G006550 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G006550.1CmoCh04G006550.1mRNA