CmoCh04G005570 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G005570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Maternal effect embryo arrest 9
Location	Cmo_Chr04: 2751848 .. 2752291 (+)
RNA-Seq Expression	CmoCh04G005570
Synteny	CmoCh04G005570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTCTCATCTCCCAGTTCACCTTCCTCTCCGATCGAGCTTTACAAGACAAGAATTTCGACCCTTCCACCATTGAAGACCTCATGAAGCTCTTCGAGATCGAAGCCTACAACTCCTGGGCAGCCTTGGAGCTCCAACACCAGAACGAAACTCGAGACGCTGAGATCGCGATGCAACAGGCTGAGGATTATCTCGATTCCGTCATGGAAGATGCTATGGATGAGTTCAGAAGGTTCGAGGAGGAGTTCGATCGGATGGCCGAGGCTGAGCTTCAAGACCTCATCGACAAGTCGGAGAAGGCTCGCAAGATGGGCAGTTTGATGGAGAAAGCCGCCGCGGTTGCTTCCAAGAGGTACATGGAGGCGGCGATGAACTCGGCCACTGCTTCCATGAGATCTGCCTGGAAGGCCATTTCGTCCAATAAGGTTCATCCTTCTTGA

mRNA sequence

ATGGAAGCTCTCATCTCCCAGTTCACCTTCCTCTCCGATCGAGCTTTACAAGACAAGAATTTCGACCCTTCCACCATTGAAGACCTCATGAAGCTCTTCGAGATCGAAGCCTACAACTCCTGGGCAGCCTTGGAGCTCCAACACCAGAACGAAACTCGAGACGCTGAGATCGCGATGCAACAGGCTGAGGATTATCTCGATTCCGTCATGGAAGATGCTATGGATGAGTTCAGAAGGTTCGAGGAGGAGTTCGATCGGATGGCCGAGGCTGAGCTTCAAGACCTCATCGACAAGTCGGAGAAGGCTCGCAAGATGGGCAGTTTGATGGAGAAAGCCGCCGCGGTTGCTTCCAAGAGGTACATGGAGGCGGCGATGAACTCGGCCACTGCTTCCATGAGATCTGCCTGGAAGGCCATTTCGTCCAATAAGGTTCATCCTTCTTGA

Coding sequence (CDS)

ATGGAAGCTCTCATCTCCCAGTTCACCTTCCTCTCCGATCGAGCTTTACAAGACAAGAATTTCGACCCTTCCACCATTGAAGACCTCATGAAGCTCTTCGAGATCGAAGCCTACAACTCCTGGGCAGCCTTGGAGCTCCAACACCAGAACGAAACTCGAGACGCTGAGATCGCGATGCAACAGGCTGAGGATTATCTCGATTCCGTCATGGAAGATGCTATGGATGAGTTCAGAAGGTTCGAGGAGGAGTTCGATCGGATGGCCGAGGCTGAGCTTCAAGACCTCATCGACAAGTCGGAGAAGGCTCGCAAGATGGGCAGTTTGATGGAGAAAGCCGCCGCGGTTGCTTCCAAGAGGTACATGGAGGCGGCGATGAACTCGGCCACTGCTTCCATGAGATCTGCCTGGAAGGCCATTTCGTCCAATAAGGTTCATCCTTCTTGA

Protein sequence

MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQQAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRYMEAAMNSATASMRSAWKAISSNKVHPS

Homology

[Close]

BLAST of CmoCh04G005570 vs. ExPASy TrEMBL
Match: A0A6J1FR93 (uncharacterized protein LOC111447720 OS=Cucurbita moschata OX=3662 GN=LOC111447720 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.9e-70
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ
Sbjct: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of CmoCh04G005570 vs. ExPASy TrEMBL
Match: A0A6J1IXX5 (uncharacterized protein LOC111481629 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481629 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.9e-68
Identity = 143/147 (97.28%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAM 
Sbjct: 40  MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMH 99

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDA+DEFRRFEEEFDRMAE ELQDL+DKSEKARKMGSLMEKAAAVASKRY
Sbjct: 100 QAEDYLDSVMEDALDEFRRFEEEFDRMAEVELQDLVDKSEKARKMGSLMEKAAAVASKRY 159

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 160 MEAAMNSATASMRSAWKAISSNKVHPS 186

[Close]

BLAST of CmoCh04G005570 vs. ExPASy TrEMBL
Match: A0A0A0LAB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G214020 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.7e-65
Identity = 138/147 (93.88%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSD+AL DKNFDPSTIEDLMKLFEIEAY SWAA+ELQHQNE +DAEIAMQ
Sbjct: 1   MEALISQFTFLSDQALHDKNFDPSTIEDLMKLFEIEAYKSWAAIELQHQNEVQDAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ L+DKSEKARKMGSLMEKAA+VASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQQLLDKSEKARKMGSLMEKAASVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of CmoCh04G005570 vs. ExPASy TrEMBL
Match: A0A6J1E4Z9 (uncharacterized protein LOC111430656 OS=Cucurbita moschata OX=3662 GN=LOC111430656 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.2e-63
Identity = 136/147 (92.52%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSD+AL+DKNFDPSTIEDLMKLFEIEAY SWAA ELQ QNE ++AEIAMQ
Sbjct: 1   MEALISQFTFLSDQALRDKNFDPSTIEDLMKLFEIEAYKSWAASELQLQNEAQEAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120
           +AEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQ+L+DKSEKARKMGSLMEKAAAVASKRY
Sbjct: 61  KAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQELVDKSEKARKMGSLMEKAAAVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of CmoCh04G005570 vs. ExPASy TrEMBL
Match: A0A6J1JCA1 (uncharacterized protein LOC111483158 OS=Cucurbita maxima OX=3661 GN=LOC111483158 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.1e-63
Identity = 135/147 (91.84%), Postives = 141/147 (95.92%), Query Frame = 0


Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSD+AL DKNFDPSTIEDLMKLFEIEAY SWAA ELQ QNE ++AEIAMQ
Sbjct: 1   MEALISQFTFLSDQALHDKNFDPSTIEDLMKLFEIEAYKSWAASELQLQNEAQEAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAE ELQ+L+DKSEKARKMGSLMEKAAA+ASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAETELQELVDKSEKARKMGSLMEKAAAIASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of CmoCh04G005570 vs. NCBI nr
Match: XP_022942791.1 (uncharacterized protein LOC111447720 [Cucurbita moschata] >XP_022942792.1 uncharacterized protein LOC111447720 [Cucurbita moschata])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ
Sbjct: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY
Sbjct: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of CmoCh04G005570 vs. NCBI nr
Match: KAG6600354.1 (hypothetical protein SDJN03_05587, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269.2 bits (687), Expect = 2.0e-68
Identity = 144/147 (97.96%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ
Sbjct: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120
           QAED+LDSVMEDAMDEFR+FEEEFDRMAEAELQDL+DKSEKARKMGSLMEKAAAVASKRY
Sbjct: 61  QAEDHLDSVMEDAMDEFRKFEEEFDRMAEAELQDLVDKSEKARKMGSLMEKAAAVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of CmoCh04G005570 vs. NCBI nr
Match: KAG7031013.1 (hypothetical protein SDJN02_05052, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.1 bits (684), Expect = 4.5e-68
Identity = 143/147 (97.28%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ
Sbjct: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120
           QAED+LDSVMEDAMDEFR+FEEEFDRMAEAELQDL+DKSEKARK+GSLMEKAAAVASKRY
Sbjct: 61  QAEDHLDSVMEDAMDEFRKFEEEFDRMAEAELQDLVDKSEKARKLGSLMEKAAAVASKRY 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 121 MEAAMNSATASMRSAWKAISSNKVHPS 147

[Close]

BLAST of CmoCh04G005570 vs. NCBI nr
Match: XP_022982937.1 (uncharacterized protein LOC111481629 isoform X1 [Cucurbita maxima] >XP_022982945.1 uncharacterized protein LOC111481629 isoform X2 [Cucurbita maxima])

HSP 1 Score: 267.7 bits (683), Expect = 5.9e-68
Identity = 143/147 (97.28%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAM 
Sbjct: 40  MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMH 99

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDA+DEFRRFEEEFDRMAE ELQDL+DKSEKARKMGSLMEKAAAVASKRY
Sbjct: 100 QAEDYLDSVMEDALDEFRRFEEEFDRMAEVELQDLVDKSEKARKMGSLMEKAAAVASKRY 159

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 160 MEAAMNSATASMRSAWKAISSNKVHPS 186

[Close]

BLAST of CmoCh04G005570 vs. NCBI nr
Match: XP_023533822.1 (uncharacterized protein LOC111795549 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267.7 bits (683), Expect = 5.9e-68
Identity = 143/147 (97.28%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAA+ELQHQNE RDAEIAMQ
Sbjct: 90  MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAAMELQHQNEVRDAEIAMQ 149

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120
           QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDL+DKSEKARKMG LMEKAAAVASKRY
Sbjct: 150 QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLVDKSEKARKMGRLMEKAAAVASKRY 209

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           MEAAMNSATASMRSAWKAISSNKVHPS
Sbjct: 210 MEAAMNSATASMRSAWKAISSNKVHPS 236

[Close]

BLAST of CmoCh04G005570 vs. TAIR 10
Match: AT1G60870.1 (maternal effect embryo arrest 9 )

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-39
Identity = 88/147 (59.86%), Postives = 113/147 (76.87%), Query Frame = 0


Query: 1   MEALISQFTFLSDRALQDKNFDPSTIEDLMKLFEIEAYNSWAALELQHQNETRDAEIAMQ 60
           MEALI  FT LSD+AL DK FDPS IEDLM+LFE+++Y +WAALE + Q E  +AE +++
Sbjct: 1   MEALIHHFTLLSDQALVDKTFDPSRIEDLMRLFEVDSYKAWAALESEQQQELEEAEESLR 60

Query: 61  QAEDYLDSVMEDAMDEFRRFEEEFDRMAEAELQDLIDKSEKARKMGSLMEKAAAVASKRY 120
           +AE  LD  ME  M+E+RR  EE +RM  AEL++L +K+E AR+ G+LMEKAA VA+KR+
Sbjct: 61  EAELELDRDMEWGMEEYRRTLEEMERMEAAELKELEEKAETARRTGNLMEKAATVAAKRH 120

Query: 121 MEAAMNSATASMRSAWKAISSNKVHPS 148
           + AAM SA ASMRSAWK  + NKVHPS
Sbjct: 121 IAAAMGSAAASMRSAWKTAAGNKVHPS 147

The following BLAST results are available for this feature:

BLAST of CmoCh04G005570 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G005570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FR93	8.9e-70	100.00	uncharacterized protein LOC111447720 OS=Cucurbita moschata OX=3662 GN=LOC1114477...	[more]
A0A6J1IXX5	2.9e-68	97.28	uncharacterized protein LOC111481629 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0LAB6	1.7e-65	93.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G214020 PE=4 SV=1	[more]
A0A6J1E4Z9	1.2e-63	92.52	uncharacterized protein LOC111430656 OS=Cucurbita moschata OX=3662 GN=LOC1114306...	[more]
A0A6J1JCA1	2.1e-63	91.84	uncharacterized protein LOC111483158 OS=Cucurbita maxima OX=3661 GN=LOC111483158...	[more]

BLAST of CmoCh04G005570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942791.1	1.8e-69	100.00	uncharacterized protein LOC111447720 [Cucurbita moschata] >XP_022942792.1 unchar...	[more]
KAG6600354.1	2.0e-68	97.96	hypothetical protein SDJN03_05587, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7031013.1	4.5e-68	97.28	hypothetical protein SDJN02_05052, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022982937.1	5.9e-68	97.28	uncharacterized protein LOC111481629 isoform X1 [Cucurbita maxima] >XP_022982945...	[more]
XP_023533822.1	5.9e-68	97.28	uncharacterized protein LOC111795549 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh04G005570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60870.1	2.1e-39	59.86	maternal effect embryo arrest 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 70..90
None	No IPR available	PANTHER	PTHR37707	MATERNAL EFFECT EMBRYO ARREST 9	coord: 1..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G005570.1	CmoCh04G005570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009555	pollen development
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003676	nucleic acid binding