CmoCh04G004610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G004610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Tubulin alpha chain
Location	Cmo_Chr04: 2293636 .. 2298023 (+)
RNA-Seq Expression	CmoCh04G004610
Synteny	CmoCh04G004610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCGTTGAATTCCTTGTGAGGAAGAAAGTTCCATCTCTGCTTCTAGTTCTACTTCTAGTTCTACCTATGGCTGCTCTGCAAATTCTCAAATCAACTGTCTCTCCTCTTTCGTTCTCTCAGCCGAGTTTTGGCGTCCAATCGAGCCGGTTCTTCACGGAGTTGGATTCCTCGAGGAGGTCTGTACGGTTCCATGGCCGTCGGAGAAGTTTGAGATATGGCTGCGTTTGTAGGAGGTTGAGTTTCCGTTGCGCTGCTCAGGATGCTCATAAGGAAAGCAATGGTAAGTTTTAGCTGGCTTTTCTTCTTCTTCTTCTTCTGATTCTGCTTGTTGCGGTCTTGTTTTTTGTTCTGTGTTTTTTTTTTTTCGTTCTCAGTGCATTTGCCTTGCTTGGATCTTCTTCATGAATTGATTTTCGTTATCATGGACTTCGTGTTGCTCATTTTGAAGGCGAGAGATCGAGAGGCTACTAATTAACTTGTTTAGGTCAGGCAATAGTTCCATGGTGTGTGTTGTTCGGATGTTCCATCACTCTCACTCGTGAATGATCTTGCTCTTTTGAGAATCGTGCGAGCATTCATTCGGCTATTATTTCGTCACTTCTGGTTTATCTTTCTCTGTGCATTTTCCTTGCTCGGATGCCTTGATGAATTGATGCTAGTGATCATTGACTTGAGCGAGAGATAGAGAGGCAATAAGTAGCTTAAGCCTTCGCTGAGGCAGAATTTGCGTGTAGTTTGTTGTTCAGATTGTCCGTCACTTCCGAATTTTCTTGTTCTGTGGATATTAGCTCAATCATTTAGAAAAATCGCACGAGACAAGATCCCTCCAGCCATTCGTCCGTCATTCCTTAAATCTCATTCACTGTGCATTTTCCTTGTTTGGATATCTTGATGAATGGATGTTCGTTATTGTAGACATCGTTCTGCTTATTTATTTCCGAAGCGAGAAATGGAAACACAAATGCACCAAGAGAGAGAATTCGGGAAGAACGGACGAATAGTTGGATGGACCTCGTACTATCTTGTTTTACCACATGCTTGTGCTACAGTCCACAGAATAAGGTAGTAGATGTTCATTATCATAGAGCTCATCTTGCTTAGTTTCAAAAGGCGAGAGTTAGGAGAGGCATCTAACTTTCTTAGAAGAGGCGGAAGTTGCACGGTGAAGTTTATTTAGCTGGTCTTTCATTTCTTAGTAATCATGTAGCAAAATTGTGCTAGTGTCCATCAAGCTATTTGAGTAAATGAGGAACGGAAGATGCTTGCGGCTACGCATAAGGATCGCTTAGTTGGCACTCTAATTCTGTTTGGAGCTTCATTCTCGAGTCAACATATGCACAGCCGCAAAGATGAAATTTAAACCGGAATCTGAAAATTTAAGCTAAGAGTTTTGATGATGTTTATCATATTTTTAAAATTTAACCAAACTTTTTGTTCTTCAGCCAGAAAACACTTGGTAGATGGATAGAACCATCATTCCTACCAATATCTGTGTTAACCATGAATCTGTAACCGTGGTTTTTATTGGTCCAGTTGTTATAGTTAAAGCTTTTAGGAAGCTACATATCTGTACCAAGCCAACAGTTCTAGTACCCGTACTTGTATTAGGAGTGGTAGCTGGCTATGCTTGTTTAGATTGCTTGAACAGCTTGCTAAAGGTCGAATTGCTCCTTTGAGAAGCATTTCCATTTCGGACATTAGAGCTTTGTTCAGCCAGCATAACAGTGGCATGATTTCTTTAGTCTTCCAAGTTTATCTTCCATGAACTTTCCAGGCAAGTCTTTTTTGAGTGCATTATCTTCTTACCATGTTCATACTTGGCCTTTATTCTTCGGTCCCATATAGAGGAACTTTTACTTATTAGAGCATAGCTTTTAGAGTTCACCTGATTTGATGTTCCAAGAAAGTTTGTATCTGCCTCAGTAGTAATGCTTCTAACAGTAGGTCTTCATAGTCGGAATCTTTCATATTCCGCATCTTAGTTTTTGTTAATTCTAGTATATTACTTGAGTTGAATGTATTGAAGAATGTTTTTTGTTTGAGACCTTCGATTATGTTAATTTAAGGTGTTATACACTACTTTTTTCAGGAGAAGAACCTCCAGAATCATTATTCATGAAGGAGCTGAAGAAGAGAGGTATAGCTCCCACTTCCTTGCTTGAGGATACTAACAGCACTGAATTTGAACTTGGTGTTGAGGCGACGGGAGGAAGCCTAGATTTATCCGGTACAAGTGCTGTTTCAACTGAAGTTAGCAAGAGCCTATCCAATCAAATGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTCGAGGTTAATTTCCTTATGATTTTATTTATTCGAGTTTATGAGTTATTCAAATTTCTAAATTCATTATATCTGATCTGTTTTGATTTCTATTGTTCCCTTGCTTGAAGAGTTGTGACCAAAATAACCAGAATTTGGTGAACAATTAATGAAAATATTATTACCATTCACCAAGAACAATGAAAGACTGGCCGGCCATACAAACCTAAAGCTAAAGACGTAAGGGATCTATAAAAAAGAATTACAATAAGTTGCCGGCTCCAAAGTTGATAATCATCCAAAACAATTGGACGACCAAAAACTCTCTGGAGCAAAAGCCTAAAGAAAAGCATTGTAGTGAGCCAAGCTCCAAAACATCCTACCATTTTTCCCCATAAAAATCCTCATAATTCTTTCTAACTTAATTCTCCAAACAGCAACAAAATAATCCGCCTGCTGACTGCTGATGAACCTTTCCTTCGTTGGCAAAGGGAGGATGAAAATAATCTCAATTCTCATCCACACATCAGTGATTAGAAATGAAAGAAATAATCTTGATAATACACTAGATGTATTGAAAAATTTCTCCCAAAGCTTCTCAGAAAACATGCATCCGAGAATGCTCTTTGGATGTGCCTGCTTGCAAAGATCACACCATTGAAATCAAACTACTCAAGACAATTTTGAATAAGTCCATGATATCGATTCTCCCAAGGCAACCAACCAAAAGCAGAATCAAGGGTGTTGTTTGTTGGTGATATGATGGTATCTTTTATAAAATATAAAACTACTAGTAGTTGCCAACTAAATATTAGGTTGAATATAAAGTTGTATTAATTAATTGATGAACATATTTTATGTCTCAACCACAAACTTTCCTCCATCCCTATAGCTCAATTAGAAAGATTTACTTTCTATAGGTATAGAAAAGCACCATCAAACATGAAGCCCAAGATACTCGAGAAATAATTAGTCATTTGTATTAGTAGTTCTTATAAAAACAAAACGTACTTGTAAATTTTTTTTAAAGAAGTGTTACTTTGACATGCCAAGGATCATAATCGGAATCCATCATAGTGAGGTTTGAAATTGAAGTATGCAGTATTTGAGCCTTCTACATGTCACTGGAACTGTATTCTATTATCAAACAAAAACCTAGGAAAAACTGGGGAAGTTCATTTCTAATTTTGTGCTGGAGTGAACACAATCTGAGTGATCCATTCGTTGCAGTTTTTTGGCTCACTTCTAAAAGAGAGAACAGTTTCTATATGATTGCTTTAATTTCTACTTTCTGGCATCAATTTGTTCTACTTATTTCGATCCTTTTTCATTCCAATTTCAAGTGATTATCATTTCTACGGCATATTTCAATCTTCTATATTCTAGTTTGTGTTAGTAATCACGACCCTCCACAATGTTATGTTATTGTTCACTTTAAGCCTAAGCTCTCATGACTTTACTTTTGACTTTCCTAAAAGGCCTCGTGACAATGGAGATAGTATTTCTTACTTATGAATCCTTATTCAACTTCTTAATTAGCCGATGTGGAACTCCCCTCCCAACAATCCTCAACCGTTTGAAGATGTTTAAGGTTAACATTGTTTTATTTGGTTTCAGGGTTTGATCCCTCGTGCTAAACTTTTGCTAACACTGGGAGGAACATTTTTCTTAGGATTCTGGCCGCTGATCGTCATCACTGTTTCATTATTTTTTGCTTTATACTTTGTAAGGCTTCTTGAATCCAGATTAACAACCAAGTACTAAAGAGGAGCTAGACTTTGTGCTTGATTACAAAGACCTAGATGAAAACTAACAATTCTTAAATATTTTGTTCCAATGCAGTTTTTTGGATCATCTTTTGTTCACGACGGCACCCAAACGCCACCATCTCCTCCACCGTATGTTTATCCATATGCTCCTTTAGAAGACGAGAGGATTTCACAAATAGCTCCTCGTGTAAATTGACTGGTACCCATTATAATCTTAATTGGTTGGTTTTCTGCTACTTACTTTTCCCTTTCGCAATATTGATTCCTGTCCTTGCAATATTATGTATATATGAAAATGATTGTTAGCTAGAATTTTCTTGTTTACACTTTCCC

mRNA sequence

CCCGTTGAATTCCTTGTGAGGAAGAAAGTTCCATCTCTGCTTCTAGTTCTACTTCTAGTTCTACCTATGGCTGCTCTGCAAATTCTCAAATCAACTGTCTCTCCTCTTTCGTTCTCTCAGCCGAGTTTTGGCGTCCAATCGAGCCGGTTCTTCACGGAGTTGGATTCCTCGAGGAGGTCTGTACGGTTCCATGGCCGTCGGAGAAGTTTGAGATATGGCTGCGTTTGTAGGAGGTTGAGTTTCCGTTGCGCTGCTCAGGATGCTCATAAGGAAAGCAATGGAGAAGAACCTCCAGAATCATTATTCATGAAGGAGCTGAAGAAGAGAGGTATAGCTCCCACTTCCTTGCTTGAGGATACTAACAGCACTGAATTTGAACTTGGTGTTGAGGCGACGGGAGGAAGCCTAGATTTATCCGGTACAAGTGCTGTTTCAACTGAAGTTAGCAAGAGCCTATCCAATCAAATGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTCGAGGGTTTGATCCCTCGTGCTAAACTTTTGCTAACACTGGGAGGAACATTTTTCTTAGGATTCTGGCCGCTGATCGTCATCACTGTTTCATTATTTTTTGCTTTATACTTTTTTTTTGGATCATCTTTTGTTCACGACGGCACCCAAACGCCACCATCTCCTCCACCGTATGTTTATCCATATGCTCCTTTAGAAGACGAGAGGATTTCACAAATAGCTCCTCGTGTAAATTGACTGGTACCCATTATAATCTTAATTGGTTGGTTTTCTGCTACTTACTTTTCCCTTTCGCAATATTGATTCCTGTCCTTGCAATATTATGTATATATGAAAATGATTGTTAGCTAGAATTTTCTTGTTTACACTTTCCC

Coding sequence (CDS)

ATGGCTGCTCTGCAAATTCTCAAATCAACTGTCTCTCCTCTTTCGTTCTCTCAGCCGAGTTTTGGCGTCCAATCGAGCCGGTTCTTCACGGAGTTGGATTCCTCGAGGAGGTCTGTACGGTTCCATGGCCGTCGGAGAAGTTTGAGATATGGCTGCGTTTGTAGGAGGTTGAGTTTCCGTTGCGCTGCTCAGGATGCTCATAAGGAAAGCAATGGAGAAGAACCTCCAGAATCATTATTCATGAAGGAGCTGAAGAAGAGAGGTATAGCTCCCACTTCCTTGCTTGAGGATACTAACAGCACTGAATTTGAACTTGGTGTTGAGGCGACGGGAGGAAGCCTAGATTTATCCGGTACAAGTGCTGTTTCAACTGAAGTTAGCAAGAGCCTATCCAATCAAATGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTCGAGGGTTTGATCCCTCGTGCTAAACTTTTGCTAACACTGGGAGGAACATTTTTCTTAGGATTCTGGCCGCTGATCGTCATCACTGTTTCATTATTTTTTGCTTTATACTTTTTTTTTGGATCATCTTTTGTTCACGACGGCACCCAAACGCCACCATCTCCTCCACCGTATGTTTATCCATATGCTCCTTTAGAAGACGAGAGGATTTCACAAATAGCTCCTCGTGTAAATTGA

Protein sequence

MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTSAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFALYFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN

Homology

[Close]

BLAST of CmoCh04G004610 vs. ExPASy TrEMBL
Match: A0A6J1FRG9 (uncharacterized protein LOC111447509 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447509 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.3e-116
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60
           MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR
Sbjct: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60

Query: 61  CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS 120
           CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS
Sbjct: 61  CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS 120

Query: 121 AVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL 180
           AVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL
Sbjct: 121 AVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL 180

Query: 181 YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 223
           YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN
Sbjct: 181 YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 222

[Close]

BLAST of CmoCh04G004610 vs. ExPASy TrEMBL
Match: A0A6J1JUF8 (uncharacterized protein LOC111488465 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488465 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.6e-107
Identity = 207/222 (93.24%), Postives = 211/222 (95.05%), Query Frame = 0


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60
           MAALQILKSTVS LSFSQ SFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR
Sbjct: 1   MAALQILKSTVSTLSFSQTSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60

Query: 61  CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS 120
           CAAQD+HKESNGEEPPESLFMKELKKRGI PTSLLEDT STEFELG E TG ++D SGTS
Sbjct: 61  CAAQDSHKESNGEEPPESLFMKELKKRGITPTSLLEDTKSTEFELGGETTGENIDFSGTS 120

Query: 121 AVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL 180
           AVSTEVSKSLSNQ ERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITV+ FFA 
Sbjct: 121 AVSTEVSKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVAFFFAF 180

Query: 181 YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 223
           YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN
Sbjct: 181 YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 222

[Close]

BLAST of CmoCh04G004610 vs. ExPASy TrEMBL
Match: A0A6J1D5D9 (uncharacterized protein LOC111017763 OS=Momordica charantia OX=3673 GN=LOC111017763 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.6e-91
Identity = 183/222 (82.43%), Postives = 196/222 (88.29%), Query Frame = 0


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60
           MAALQ+LKS VSPLS SQP+FG +SSRF ++ DS+RR VRFHGRRRSLRYGCVCRRLSFR
Sbjct: 1   MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFR 60

Query: 61  CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS 120
           CAAQDA KESNGEEPPESLFMKELKKRG+ PTSLLED+NS +F LG E TG   D S  S
Sbjct: 61  CAAQDADKESNGEEPPESLFMKELKKRGLTPTSLLEDSNSNDFGLGGEMTGEGRDFSSRS 120

Query: 121 AVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL 180
           AVSTEV+KSLSNQ ERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIVITVS FFAL
Sbjct: 121 AVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL 180

Query: 181 YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 223
           YFFFG SFVH+G +TP SPPPYV PYA LEDERISQ APRVN
Sbjct: 181 YFFFGPSFVHNG-ETPISPPPYVDPYALLEDERISQTAPRVN 221

[Close]

BLAST of CmoCh04G004610 vs. ExPASy TrEMBL
Match: A0A6J1JBV1 (uncharacterized protein LOC111483048 OS=Cucurbita maxima OX=3661 GN=LOC111483048 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 6.2e-91
Identity = 183/222 (82.43%), Postives = 194/222 (87.39%), Query Frame = 0


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60
           MA LQILKSTVSP S SQP FG QSSRFF+ELDS+RR V  HGRRRSLRYGCV RRLSFR
Sbjct: 1   MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFVLLHGRRRSLRYGCVRRRLSFR 60

Query: 61  CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS 120
           CAAQD+ KESNGEEPPESLFMKELKKRGI PTSLLEDT++T+F LG E  G + D S  S
Sbjct: 61  CAAQDSDKESNGEEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 120

Query: 121 AVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL 180
           AVSTEV KSLSNQ ERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIV+TVS FFAL
Sbjct: 121 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 180

Query: 181 YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 223
           YFF G SFVHDGT+TP SPPPYV PYA LEDERISQ+APRVN
Sbjct: 181 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRVN 222

[Close]

BLAST of CmoCh04G004610 vs. ExPASy TrEMBL
Match: A0A6J1FWE6 (uncharacterized protein LOC111447509 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447509 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.4e-90
Identity = 186/222 (83.78%), Postives = 186/222 (83.78%), Query Frame = 0


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60
           MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR
Sbjct: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60

Query: 61  CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS 120
           CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS
Sbjct: 61  CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS 120

Query: 121 AVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL 180
           AVSTEVSKSLSNQMERSMQLNSEGLE                                  
Sbjct: 121 AVSTEVSKSLSNQMERSMQLNSEGLE---------------------------------- 180

Query: 181 YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 223
             FFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN
Sbjct: 181 --FFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 186

[Close]

BLAST of CmoCh04G004610 vs. NCBI nr
Match: XP_022942489.1 (uncharacterized protein LOC111447509 isoform X1 [Cucurbita moschata])

HSP 1 Score: 427.2 bits (1097), Expect = 8.8e-116
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60
           MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR
Sbjct: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60

Query: 61  CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS 120
           CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS
Sbjct: 61  CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS 120

Query: 121 AVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL 180
           AVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL
Sbjct: 121 AVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL 180

Query: 181 YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 223
           YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN
Sbjct: 181 YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 222

[Close]

BLAST of CmoCh04G004610 vs. NCBI nr
Match: KAG6600269.1 (hypothetical protein SDJN03_05502, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 411.8 bits (1057), Expect = 3.8e-111
Identity = 217/233 (93.13%), Postives = 219/233 (93.99%), Query Frame = 0


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60
           MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRR SFR
Sbjct: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRFSFR 60

Query: 61  CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS 120
           CAAQDAHKESNGEEPPESLFMKELKKRGI PTSLLEDTNSTEFELGVEATGG+LDLSGTS
Sbjct: 61  CAAQDAHKESNGEEPPESLFMKELKKRGITPTSLLEDTNSTEFELGVEATGGNLDLSGTS 120

Query: 121 AVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL 180
           AVSTEVSKSLSNQ ERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL
Sbjct: 121 AVSTEVSKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL 180

Query: 181 YF-----------FFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 223
           YF           FFGSSFVHDGTQTPPSPPPYVYPYAPLEDER+SQIAPRVN
Sbjct: 181 YFVRLLEFQINNQFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERVSQIAPRVN 233

[Close]

BLAST of CmoCh04G004610 vs. NCBI nr
Match: XP_023532257.1 (uncharacterized protein LOC111794456 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.8 bits (1026), Expect = 1.5e-107
Identity = 207/222 (93.24%), Postives = 212/222 (95.50%), Query Frame = 0


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60
           MAALQILKSTVSPLSFSQPSFGVQSSRFF+ELDSSRR VRFHGRRRSLRYGCVCRRLSFR
Sbjct: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFSELDSSRRFVRFHGRRRSLRYGCVCRRLSFR 60

Query: 61  CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS 120
           CAAQDAHKESNGEEPPESLFMKELKKRGI PTSLLEDT STEFELG E TG ++D SGTS
Sbjct: 61  CAAQDAHKESNGEEPPESLFMKELKKRGITPTSLLEDTKSTEFELGGETTGENIDFSGTS 120

Query: 121 AVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL 180
           AVSTEVSKSLSNQ ERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIV+T+SLFFAL
Sbjct: 121 AVSTEVSKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVVTISLFFAL 180

Query: 181 YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 223
            FFFGSSFVHDG QTPPSPPPYVYPYAPLEDERISQIAPRVN
Sbjct: 181 DFFFGSSFVHDGNQTPPSPPPYVYPYAPLEDERISQIAPRVN 222

[Close]

BLAST of CmoCh04G004610 vs. NCBI nr
Match: XP_022991980.1 (uncharacterized protein LOC111488465 isoform X1 [Cucurbita maxima])

HSP 1 Score: 398.7 bits (1023), Expect = 3.4e-107
Identity = 207/222 (93.24%), Postives = 211/222 (95.05%), Query Frame = 0


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60
           MAALQILKSTVS LSFSQ SFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR
Sbjct: 1   MAALQILKSTVSTLSFSQTSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60

Query: 61  CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS 120
           CAAQD+HKESNGEEPPESLFMKELKKRGI PTSLLEDT STEFELG E TG ++D SGTS
Sbjct: 61  CAAQDSHKESNGEEPPESLFMKELKKRGITPTSLLEDTKSTEFELGGETTGENIDFSGTS 120

Query: 121 AVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL 180
           AVSTEVSKSLSNQ ERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITV+ FFA 
Sbjct: 121 AVSTEVSKSLSNQRERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVAFFFAF 180

Query: 181 YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 223
           YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN
Sbjct: 181 YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 222

[Close]

BLAST of CmoCh04G004610 vs. NCBI nr
Match: XP_022149320.1 (uncharacterized protein LOC111017763 [Momordica charantia])

HSP 1 Score: 345.5 bits (885), Expect = 3.4e-91
Identity = 183/222 (82.43%), Postives = 196/222 (88.29%), Query Frame = 0


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFR 60
           MAALQ+LKS VSPLS SQP+FG +SSRF ++ DS+RR VRFHGRRRSLRYGCVCRRLSFR
Sbjct: 1   MAALQVLKSAVSPLSISQPNFGCRSSRFLSQSDSTRRFVRFHGRRRSLRYGCVCRRLSFR 60

Query: 61  CAAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLEDTNSTEFELGVEATGGSLDLSGTS 120
           CAAQDA KESNGEEPPESLFMKELKKRG+ PTSLLED+NS +F LG E TG   D S  S
Sbjct: 61  CAAQDADKESNGEEPPESLFMKELKKRGLTPTSLLEDSNSNDFGLGGEMTGEGRDFSSRS 120

Query: 121 AVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFAL 180
           AVSTEV+KSLSNQ ERSMQLNSEGLEGLIPRAKLLLT+GGTFFLGFWPLIVITVS FFAL
Sbjct: 121 AVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFAL 180

Query: 181 YFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 223
           YFFFG SFVH+G +TP SPPPYV PYA LEDERISQ APRVN
Sbjct: 181 YFFFGPSFVHNG-ETPISPPPYVDPYALLEDERISQTAPRVN 221

[Close]

BLAST of CmoCh04G004610 vs. TAIR 10
Match: AT1G50020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 72 Blast hits to 72 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 185.7 bits (470), Expect = 4.2e-47
Identity = 115/223 (51.57%), Postives = 148/223 (66.37%), Query Frame = 0


Query: 2   AALQILKSTVSPLSFSQPSFGVQSSRFFTELDSSRRSVRFHGRRRSLRYGCVCRRLSFRC 61
           ++L+I+K   SP+SF +    +       +L+  +R  R    R   R      R+S   
Sbjct: 4   SSLEIVKLCGSPVSFPRHKSPI-------KLECRKRVFRLPNSRSWHRL-----RVS-SS 63

Query: 62  AAQDAHKESNGEEPPESLFMKELKKRGIAPTSLLED--TNSTEFELGVEATGGSLDLSGT 121
           A      +S GEEPPESLFMKELK+RG+ PTSLL+D   +  E + G E TG S   S T
Sbjct: 64  ALNGGDNQSKGEEPPESLFMKELKRRGMTPTSLLQDYEVDQDEIKTGKE-TGNS---SKT 123

Query: 122 SAVSTEVSKSLSNQMERSMQLNSEGLEGLIPRAKLLLTLGGTFFLGFWPLIVITVSLFFA 181
           +A +    KSL NQ ERS+ LNSEGLEGLIPRA++LLT+GGTFFLGFWPLIV+T+  F A
Sbjct: 124 TATTPAFDKSLLNQRERSLALNSEGLEGLIPRARILLTIGGTFFLGFWPLIVLTLGAFSA 183

Query: 182 LYFFFGSSFVHDGTQTPPSPPPYVYPYAPLEDERISQIAPRVN 223
           LY +FG+ F+HDG++TP SPPPY+ PYA LEDERIS + PR+N
Sbjct: 184 LYLYFGADFIHDGSRTPVSPPPYIDPYALLEDERISGMDPRLN 209

The following BLAST results are available for this feature:

BLAST of CmoCh04G004610 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G004610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FRG9	4.3e-116	100.00	uncharacterized protein LOC111447509 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JUF8	1.6e-107	93.24	uncharacterized protein LOC111488465 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1D5D9	1.6e-91	82.43	uncharacterized protein LOC111017763 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1JBV1	6.2e-91	82.43	uncharacterized protein LOC111483048 OS=Cucurbita maxima OX=3661 GN=LOC111483048...	[more]
A0A6J1FWE6	1.4e-90	83.78	uncharacterized protein LOC111447509 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CmoCh04G004610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942489.1	8.8e-116	100.00	uncharacterized protein LOC111447509 isoform X1 [Cucurbita moschata]	[more]
KAG6600269.1	3.8e-111	93.13	hypothetical protein SDJN03_05502, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023532257.1	1.5e-107	93.24	uncharacterized protein LOC111794456 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022991980.1	3.4e-107	93.24	uncharacterized protein LOC111488465 isoform X1 [Cucurbita maxima]	[more]
XP_022149320.1	3.4e-91	82.43	uncharacterized protein LOC111017763 [Momordica charantia]	[more]

BLAST of CmoCh04G004610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50020.1	4.2e-47	51.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35699	F2J10.10 PROTEIN	coord: 27..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G004610.1	CmoCh04G004610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane