CmoCh04G002200 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G002200
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPlastocyanin-like domain-containing protein
LocationCmo_Chr04: 1110353 .. 1111224 (-)
RNA-Seq ExpressionCmoCh04G002200
SyntenyCmoCh04G002200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCAAAGTAGGGTTTCTTTACTTTATGCCTTTCTCTCTCTAGATTCTAATTTGTTAGCCATGCATGGTGCTGTGGCTAGAGAGAGAAATTATAATATAAATTAAGCTTTTTAGTGGGTCTTTGAGGTGAGAGAAGGAATATTATTATTAACTAATTAATTAATTAATTAAAATATGAATAAATAAAAAGAAGATGAACAAAAATAAAAAAGGTGATGGGTGGAGGGAATACTCTGGGTGGAAGTGTCGCAATCGAATGTACCTTTGTTTCCACTATTACCCTTCTTTTGTTTTCTTCTTAATTATATTCTTTTATTATTTTCACTTTTTTCTTAATACTTCTTAATTAAGAAAACAAAATTAAAAATACATTTATTTCCAATAATTTATTTTCATAACGTTTGAGTATATTTTATTTATTTATTTTTAGTTTAGTGAAACTTNAACCAATACAATCTACGAGACGCAATTGCACGGTGTACCACTCAGGTAAAACCAAGCTCTAGTTTTCATTTACTTTACAACCATTTGTGAAGCATGAGGAAGAAAGATGAAGCTGTTGTTCATGGCAGGTGTATCCGAAGTCATGGACTGCAATATATGTGGCGCTGGACAACGTGGGAATGTGGAATTTAAGGTCGGAATTCTGGGCAAGGCAGTACCTGGGTCAACAGTTTTACTTGAGAGTTTACACGCCATCGACTTCATTGAGAGACGAGTACCCAATTCCAAAGAATGCTCTGCTCTGTGGAAGAGCCACTGGGAGACGAACCAGGCCACTCTAGGCTCTATCCTCTGAGCTCAACACAATCAAATGATTTGTCATGTCGTATCATATCATATTTAGTTCTTCTGGGAAGGATATTC

mRNA sequence

ATGGCCACCAAAGTAGGTTTAGTGAAACTTNAACCAATACAATCTACGAGACGCAATTGCACGGTGTACCACTCAGGTGTATCCGAAGTCATGGACTGCAATATATGTGGCGCTGGACAACGTGGGAATGTGGAATTTAAGGTCGGAATTCTGGGCAAGGCAGTACCTGGGTCAACAGTTTTACTTGAGAGTTTACACGCCATCGACTTCATTGAGAGACGAGTACCCAATTCCAAAGAATGCTCTGCTCTGTGGAAGAGCCACTGGGAGACGAACCAGGCCACTCTAGGCTCTATCCTCTGAGCTCAACACAATCAAATGATTTGTCATGTCGTATCATATCATATTTAGTTCTTCTGGGAAGGATATTC

Coding sequence (CDS)

ATGGCCACCAAAGTAGGTTTAGTGAAACTTNAACCAATACAATCTACGAGACGCAATTGCACGGTGTACCACTCAGGTGTATCCGAAGTCATGGACTGCAATATATGTGGCGCTGGACAACGTGGGAATGTGGAATTTAAGGTCGGAATTCTGGGCAAGGCAGTACCTGGGTCAACAGTTTTACTTGAGAGTTTACACGCCATCGACTTCATTGAGAGACGAGTACCCAATTCCAAAGAATGCTCTGCTCTGTGGAAGAGCCACTGGGAGACGAACCAGGCCACTCTAGGCTCTATCCTCTGA

Protein sequence

MATKVGLVKLXPIQSTRRNCTVYHSGVSEVMDCNICGAGQRGNVEFKVGILGKAVPGSTVLLESLHAIDFIERRVPNSKECSALWKSHWETNQATLGSIL
Homology
BLAST of CmoCh04G002200 vs. ExPASy TrEMBL
Match: A0A446XUH2 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Av1G244950 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.8e-06
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 13  IQSTRRNCTVYHSGVSEVMDCNICGAGQRGNVEFKVGILGKAVPGSTVLLESLHAIDFIE 72
           +Q  RR+  V+ +GVS  +D +I   GQRG+VE  VG LG+AVPG  VL   + A + + 
Sbjct: 462 LQPERRDRPVHVAGVSWGVDSDIHATGQRGDVERSVGELGQAVPGPAVLPAGILAGELVA 521

Query: 73  RRVPNSKECSALWKSHWETNQATLGSI 100
           RR P+ +E +AL       +QA L S+
Sbjct: 522 RREPHPQERTALRPRLRPPDQAALNSV 548

BLAST of CmoCh04G002200 vs. ExPASy TrEMBL
Match: A0A6A3A066 (Plastocyanin-like domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110647pilonHSYRG00121 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.2e-06
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 0

Query: 26  GVSEVMDCNICGAGQRGNVEFKVGILGKAVPGSTVLLESLHAIDFIERRVPNSKECSALW 85
           GVSEV+D ++ G+GQRG+VE+KV  LG+ +  + VL + + A  F+ERR+ +  E S LW
Sbjct: 97  GVSEVVDRHLRGSGQRGDVEYKVRELGQTISRAAVLSQGIIACKFMERRIAHPTERSPLW 156

Query: 86  KSHWETNQATL 97
                  QA L
Sbjct: 157 PGQRAPYQAFL 167

BLAST of CmoCh04G002200 vs. ExPASy TrEMBL
Match: A0A444ER52 (Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_00023406 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 0

Query: 9   KLXPIQSTRRNCTVYHSGVSEVMDCNICGAGQRGNVEFKVGILGKAVPGSTVLLESLHAI 68
           K   +Q  R +  ++ SGVS++M C +   GQRG+VE  +G LG  V GS VL   L + 
Sbjct: 281 KQGELQPKRCSIPLHCSGVSQLMVCYLHAFGQRGHVEHPIGKLGSPVLGSAVLYPRLLSG 340

Query: 69  DFIERRVPNSKECSALWKSHWETNQATL 97
           + +E R  N +E  +L      +N+ATL
Sbjct: 341 ELVEGRESNPEERPSLRPGVRPSNEATL 368

BLAST of CmoCh04G002200 vs. ExPASy TrEMBL
Match: A0A287J1I5 (Plastocyanin-like domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.4e-04
Identity = 30/87 (34.48%), Postives = 48/87 (55.17%), Query Frame = 0

Query: 13  IQSTRRNCTVYHSGVSEVMDCNICGAGQRGNVEFKVGILGKAVPGSTVLLESLHAIDFIE 72
           +QS  R+  V+ +G SE++  ++   GQRG+VE +VG LG  VPG  VL   +HA   + 
Sbjct: 169 LQSRGRSGQVHGAGKSEIVGGDLHRVGQRGDVELEVGGLGAQVPGPAVLPPGVHADALLP 228

Query: 73  RRVPNSKECSALWKSHWETNQATLGSI 100
           RR P + + + L   + +   A L  +
Sbjct: 229 RRAPRADQRAPLRPRYQQQPPAILAVV 255

BLAST of CmoCh04G002200 vs. NCBI nr
Match: KAG6422710.1 (hypothetical protein SASPL_113089 [Salvia splendens])

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 27  VSEVMDCNICGAGQRGNVEFKVGILGKAVPGSTVLLESLHAIDFIERRVPNSKECSALWK 86
           VS+VMD +I G GQRGNVE +VG+LG  VPG   + E +HAI  IERR+P+ +EC++LW+
Sbjct: 471 VSQVMDRDISGVGQRGNVELEVGVLGPTVPGPAAVSEGIHAIHVIERRIPHPEECASLWE 530

Query: 87  SHWETNQATL 97
              + ++A+L
Sbjct: 531 GERKAHEASL 540

BLAST of CmoCh04G002200 vs. NCBI nr
Match: KAG6419723.1 (hypothetical protein SASPL_116233 [Salvia splendens])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 23  YHSGVSEVMDCNICGAGQRGNVEFKVGILGKAVPGSTVLLESLHAIDFIERRVPNSKECS 82
           Y+  VS+VMD +I G GQ GNVE +VG+LG  VPG   + E +HA+  IERR+P+ +E +
Sbjct: 454 YNLRVSQVMDRDISGVGQCGNVELEVGVLGTTVPGPAAVSEGIHAVHVIERRIPHPEERT 513

Query: 83  ALWKSHWETNQATL 97
           +LW+   + ++A L
Sbjct: 514 SLWEGERKAHEAAL 527

BLAST of CmoCh04G002200 vs. NCBI nr
Match: VAI79866.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 61.2 bits (147), Expect = 5.7e-06
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 13  IQSTRRNCTVYHSGVSEVMDCNICGAGQRGNVEFKVGILGKAVPGSTVLLESLHAIDFIE 72
           +Q  RR+  V+ +GVS  +D +I   GQRG+VE  VG LG+AVPG  VL   + A + + 
Sbjct: 462 LQPERRDRPVHVAGVSWGVDSDIHATGQRGDVERSVGELGQAVPGPAVLPAGILAGELVA 521

Query: 73  RRVPNSKECSALWKSHWETNQATLGSI 100
           RR P+ +E +AL       +QA L S+
Sbjct: 522 RREPHPQERTALRPRLRPPDQAALNSV 548

BLAST of CmoCh04G002200 vs. NCBI nr
Match: KAE8696742.1 (hypothetical protein F3Y22_tig00110647pilonHSYRG00121 [Hibiscus syriacus])

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 0

Query: 26  GVSEVMDCNICGAGQRGNVEFKVGILGKAVPGSTVLLESLHAIDFIERRVPNSKECSALW 85
           GVSEV+D ++ G+GQRG+VE+KV  LG+ +  + VL + + A  F+ERR+ +  E S LW
Sbjct: 97  GVSEVVDRHLRGSGQRGDVEYKVRELGQTISRAAVLSQGIIACKFMERRIAHPTERSPLW 156

Query: 86  KSHWETNQATL 97
                  QA L
Sbjct: 157 PGQRAPYQAFL 167

BLAST of CmoCh04G002200 vs. NCBI nr
Match: RZR88914.1 (hypothetical protein BHM03_00016596 [Ensete ventricosum])

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-04
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 0

Query: 9   KLXPIQSTRRNCTVYHSGVSEVMDCNICGAGQRGNVEFKVGILGKAVPGSTVLLESLHAI 68
           K   +Q  R +  ++ SGVS++M C +   GQRG+VE  +G LG  V GS VL   L + 
Sbjct: 165 KQGELQPKRCSIPLHCSGVSQLMVCYLHAFGQRGHVEHPIGKLGSPVLGSAVLYPRLLSG 224

Query: 69  DFIERRVPNSKECSALWKSHWETNQATL 97
           + +E R  N +E  +L      +N+ATL
Sbjct: 225 ELVEGRESNPEERPSLRPGVRPSNEATL 252

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A446XUH22.8e-0641.38Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Av1G... [more]
A0A6A3A0666.2e-0643.66Plastocyanin-like domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3... [more]
A0A444ER522.0e-0437.50Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_0002340... [more]
A0A287J1I53.4e-0434.48Plastocyanin-like domain-containing protein OS=Hordeum vulgare subsp. vulgare OX... [more]
Match NameE-valueIdentityDescription
KAG6422710.11.4e-1251.43hypothetical protein SASPL_113089 [Salvia splendens][more]
KAG6419723.11.3e-1045.95hypothetical protein SASPL_116233 [Salvia splendens][more]
VAI79866.15.7e-0641.38unnamed protein product [Triticum turgidum subsp. durum][more]
KAE8696742.11.3e-0543.66hypothetical protein F3Y22_tig00110647pilonHSYRG00121 [Hibiscus syriacus][more]
RZR88914.14.1e-0437.50hypothetical protein BHM03_00016596 [Ensete ventricosum][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G002200.1CmoCh04G002200.1mRNA