CmoCh04G001800 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G001800
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	thioredoxin H1-like
Location	Cmo_Chr04: 918125 .. 920787 (+)
RNA-Seq Expression	CmoCh04G001800
Synteny	CmoCh04G001800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCTGCGTGGTCCTGAAATTCTCCAGTCCCACATCGCTATTTCTTAATATCCCCTCCTCTTCGACTCCTATAAATTCACCCGCTCAGCTCTCAACTCTCCATTCAGTTTAATACACAGTTCCCATTTCTTCTTTCTTTTCCTTTTCCTTTTGTTCTGTAAGCGACTTCAATGGCGGACATGGGGAAAGTGGTTTCTTGCCCTACAGTTGGCTCATGGAAGCAACAGTTCCTCAAAGCCAAACAACACAACAAACTGGTACACTTTTTTCCTTCCTTTTTCTTTTCACCACGCATACAACAAATCTCATTCTAGTATTCTTTTCAACAGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCTCCACTGCTCGACGATTTAGCAAAGAAATCGTGCAATAACGTAACGTTCTTGAAAGTCGACGTTGATGAACTCATGGTATGTTCCAAACTCTTCGATCTGAGAAATTCACTTACTTCTAGGACGCAACAACCGTAACAATAACTGTGATTATCATTGTAGAGTGTGGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATCTATTGCTCAACACTGTGTCTAAACATAGCGCATGAAGCTGGTCTTTTCATCAGAATTTGCTTTTCATAAATAAACAACAATGCTGCAAAGAAACATTAAATGTTGTGCAACAAATTTACACGTTTATGTTCTATGGAGATGGTCAGTGAATCTTTGTCATGGCTATCAACCAACCCTCTCTGGATTAATAAATCTTTTGTTCTATTTAATTAAGGCAGAGAATATATTCAAAAATTTTATTATAATTAAGAATTCTGAATGTGGAATGCTAGAAAAGAATTTTCGTAGTCTTCTAGCCATTAAATAACATTGCAATATGGGATTGGAATAGAAACCACAAATCTGAAAAGATTGTGACAATATATTTATCAATTATGAATTCAACCTTTTTTTTTTAGTTTTCTTTTTAAAAATAATATGTAATTAGCTAGACAAGAATACTCGATAAATACTCGATAAATGACCCCACTATTGGAGTCGAAAAATGCTAACATATACGATGTGAGATCTACTTTTATTTTGGACTTTATTTATTTATTTATTTTTAGTAAAGTTGAATGTATAGTACTCTTCTATACATGATTGGTGTATATACGTACAAATCCATTAGATGAGCTTGTATACGTATACTTTGGCTTAACTACAACTAGTGCATGTTCATGCTGTCGAAAACCAATAAAAAAGAAGAAAACACGTAAAATATCGAGGTGCACGCGTCCATATATAACATACTGGAGAAACAATCTATGCTCGTGTGATATACAATATTGATGAAATCCATGTATATTTATTCATGGTACATGAACCCGTAGGATTAAGGAATAAAGATAGAAAGGTGAAGAAAATTACACAACGTCAACTACACGTGAAAATGAACAACAATATTAGTTGTAATAAAGTAGAAAAAAATATGGAAAAGACAAAACCCACGTTCATGGGACGAACAAAAAAGAGACAAGCATCTATGCCTTTTAAGGTTAAAATTGTGCGTTAAACGCCATGAACAATACACATTCTTCAACTGCTCCAACACTGAAAATTAGTAGAGTTATATTTTCTGTTCCGCAGTTTTTTACGTTCATTATTTTGTCTATAAATTAGAAAAATTGGTATATAAAGCTTTTTAAAAAAGACCGTAACAATATCATACAATTATAGAAAGTCATAATTTTGTAGACAAATTCATGAGCTAAATATAAACATTCCTAAATAATTATGTTTGATGTAACGGATTATTATTACTTTTATCAAATAAAGTTTCTAATTAATATTATAAACATTACTACGATCTTGAGCTAACTATTAATATTATTATTATTTTAGTTTGGAGAGTGATTTTTTAAGAGAGTGGAAATGTTTACGGTTTTGTTTTCCTCTCCTTAACAGACATGTGTTTAAAACTATAAGGTCGAGGGGCAAAGCAGATAATATTTGTTGGCAGTGGTTTTTGGACCATTACATTCGGTATTAGAGCCAGTGATTAGATGATACTAGGCACCGATCGAAAAAGGGTTAGACCCCCTCTCCATAATAGGCTCGTTTTAAAACTGTGAGATTGATACCTATAGATAATGGACTAAAGCGAATAATATTACTAGAATTAAAAAAGAAAATAGAAATGAAATATTTAAATGTTGATCATGAAGAGCATGAACTTTGACTATTTGAAGTTTAGGCCTACATATTTTGAGCCCGGAGATTGACAAATACATGGGCAGGACATTGAAATCGAGGCCCAAAACAATTGAAAATTCTTGGTCCTTCTTCAATTAAATCAGCACAATTCTCCCTGGGTTGTCTCTAAGATAAGGCGCTAGCCGCTAGCTCCAATTTTCTGTTTCGTTCGTTCCCGAAAGAACGATCATCATCCAAAGCTTGTGCAGGTAGAGTTTTTGTATGTCTCCAGCTTCGGTGCGCTTTGTTTAATTCCTGTAGTTGTTTCGCATATGTTCTCAGCCGTAGAGCCCTTCTTTATCCTGAATGAATCAACCCCTTCGGCCACAGCTCAATTTCTTTATTATACTTAA

mRNA sequence

GAGCTGCGTGGTCCTGAAATTCTCCAGTCCCACATCGCTATTTCTTAATATCCCCTCCTCTTCGACTCCTATAAATTCACCCGCTCAGCTCTCAACTCTCCATTCAGTTTAATACACAGTTCCCATTTCTTCTTTCTTTTCCTTTTCCTTTTGTTCTGTAAGCGACTTCAATGGCGGACATGGGGAAAGTGGTTTCTTGCCCTACAGTTGGCTCATGGAAGCAACAGTTCCTCAAAGCCAAACAACACAACAAACTGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCTCCACTGCTCGACGATTTAGCAAAGAAATCGTGCAATAACGTAACGTTCTTGAAAGTCGACGTTGATGAACTCATGAGTGTGGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATCTATTGCTCAACACTGTAGAGTTTTTGTATGTCTCCAGCTTCGGTGCGCTTTGTTTAATTCCTGTAGTTGTTTCGCATATGTTCTCAGCCGTAGAGCCCTTCTTTATCCTGAATGAATCAACCCCTTCGGCCACAGCTCAATTTCTTTATTATACTTAA

Coding sequence (CDS)

ATGGCGGACATGGGGAAAGTGGTTTCTTGCCCTACAGTTGGCTCATGGAAGCAACAGTTCCTCAAAGCCAAACAACACAACAAACTGCTGGTTGTCAATTTCACTGCAACATGGTGCCGCCCGTGTCGTGCCATGGCTCCACTGCTCGACGATTTAGCAAAGAAATCGTGCAATAACGTAACGTTCTTGAAAGTCGACGTTGATGAACTCATGAGTGTGGCCAATGAGTTAGGAGTGGGCGCCCTTCCATCGTTTCAATTCTTCAAGAACGGACAGTTGGTGGACAAGTTCGTGGGCGCAAAGAAAGATCTATTGCTCAACACTGTAGAGTTTTTGTATGTCTCCAGCTTCGGTGCGCTTTGTTTAATTCCTGTAGTTGTTTCGCATATGTTCTCAGCCGTAGAGCCCTTCTTTATCCTGAATGAATCAACCCCTTCGGCCACAGCTCAATTTCTTTATTATACTTAA

Protein sequence

MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVTFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVEFLYVSSFGALCLIPVVVSHMFSAVEPFFILNESTPSATAQFLYYT

Homology

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BLAST of CmoCh04G001800 vs. ExPASy Swiss-Prot
Match: Q39239 (Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-27
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C T   W  Q  KAK+ NKL+V++FTA+WC PCR +AP+ +DLAKK  ++  
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKD 104
           F KVDVDEL SVA E GV A+P+F F K G++VDK VGA K+
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKE 104

[Close]

BLAST of CmoCh04G001800 vs. ExPASy Swiss-Prot
Match: Q43636 (Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.5e-27
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 0


Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C TV +W +Q  K      L+VV+FTA+WC PCR +AP L +LAKK   NVT
Sbjct: 3   AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKK-LPNVT 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           FLKVDVDEL +VA+E  V ++P+F F K G+++DK VGAKKD L  T+
Sbjct: 63  FLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTI 109

[Close]

BLAST of CmoCh04G001800 vs. ExPASy Swiss-Prot
Match: P29448 (Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-26
Identity = 56/108 (51.85%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           ++ G+V++C TV +W +Q  KA +   L+VV+FTA+WC PCR +AP   DLAKK   NV 
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK-LPNVL 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           FLKVD DEL SVA++  + A+P+F F K G+++DK VGAKKD L +T+
Sbjct: 63  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 109

[Close]

BLAST of CmoCh04G001800 vs. ExPASy Swiss-Prot
Match: Q39362 (Thioredoxin H-type 2 OS=Brassica napus OX=3708 GN=THL-2 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-26
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C  +  W  Q   AKQ NKL+V++FTA+WC PCR +AP+  DLAKK  ++  
Sbjct: 3   AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           F KVDVDEL +VA E GV A+P+F   K+G +VDK VGA+K+ L  T+
Sbjct: 63  FFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATI 110

[Close]

BLAST of CmoCh04G001800 vs. ExPASy Swiss-Prot
Match: Q96419 (Thioredoxin H-type OS=Fagopyrum esculentum OX=3617 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.9e-25
Identity = 54/109 (49.54%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA+  +V++C TV  W ++F KAK   KL+V++FTA+WC PCR + P + +LAKK   +V
Sbjct: 1   MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKK-FPHV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
            F KVDVD+L  VA E  V A+PSF   K GQ V++ VGA+KD LL+ +
Sbjct: 61  AFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKI 108

[Close]

BLAST of CmoCh04G001800 vs. ExPASy TrEMBL
Match: A0A6J1FVM4 (thioredoxin H1-like OS=Cucurbita moschata OX=3662 GN=LOC111447699 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.5e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV
Sbjct: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV
Sbjct: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 109

[Close]

BLAST of CmoCh04G001800 vs. ExPASy TrEMBL
Match: A0A6J1KBU8 (thioredoxin H-type-like OS=Cucurbita maxima OX=3661 GN=LOC111491878 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 9.5e-54
Identity = 104/109 (95.41%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAP+LD+LAKKSCNNV
Sbjct: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           TFLKVDVD+LMSVANELGVGALPSFQFFKNGQLVDKFVGAKKD+LLN V
Sbjct: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIV 109

[Close]

BLAST of CmoCh04G001800 vs. ExPASy TrEMBL
Match: A0A5A7U8S0 (Thioredoxin H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G00820 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.4e-43
Identity = 89/109 (81.65%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           M DMGKVVSC TVGSWKQQ LKAKQ+NKL+VVNFTATWC PCR MAP+L DLA K  NNV
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
             LKVDVDELMSVANE GVGALPSFQFFKNG+LVDKFVGA+KD+L  TV
Sbjct: 61  IVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTV 109

[Close]

BLAST of CmoCh04G001800 vs. ExPASy TrEMBL
Match: A0A5D3DCH1 (Thioredoxin H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00270 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.4e-43
Identity = 89/109 (81.65%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           M DMGKVVSC TVGSWKQQ LKAKQ+NKL+VVNFTATWC PCR MAP+L DLA K  NNV
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
             LKVDVDELMSVANE GVGALPSFQFFKNG+LVDKFVGA+KD+L  TV
Sbjct: 61  IVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTV 109

[Close]

BLAST of CmoCh04G001800 vs. ExPASy TrEMBL
Match: A0A1S3CMM6 (thioredoxin H1-like OS=Cucumis melo OX=3656 GN=LOC103502660 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.4e-43
Identity = 89/109 (81.65%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           M DMGKVVSC TVGSWKQQ LKAKQ+NKL+VVNFTATWC PCR MAP+L DLA K  NNV
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMSNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
             LKVDVDELMSVANE GVGALPSFQFFKNG+LVDKFVGA+KD+L  TV
Sbjct: 61  IVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTV 109

[Close]

BLAST of CmoCh04G001800 vs. NCBI nr
Match: XP_022942758.1 (thioredoxin H1-like [Cucurbita moschata] >KAG7030692.1 hypothetical protein SDJN02_04729, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227.3 bits (578), Expect = 9.4e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV
Sbjct: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV
Sbjct: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 109

[Close]

BLAST of CmoCh04G001800 vs. NCBI nr
Match: KAG6600023.1 (Thioredoxin H4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.4 bits (568), Expect = 1.4e-54
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV
Sbjct: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
            FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKF GAKKDLLLNTV
Sbjct: 61  MFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFAGAKKDLLLNTV 109

[Close]

BLAST of CmoCh04G001800 vs. NCBI nr
Match: XP_023549191.1 (thioredoxin H4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.2 bits (565), Expect = 3.0e-54
Identity = 106/109 (97.25%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MADMGKVVSCPTV SWK+QFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV
Sbjct: 1   MADMGKVVSCPTVASWKKQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKD+LLNTV
Sbjct: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNTV 109

[Close]

BLAST of CmoCh04G001800 vs. NCBI nr
Match: XP_022996723.1 (thioredoxin H-type-like [Cucurbita maxima])

HSP 1 Score: 219.5 bits (558), Expect = 2.0e-53
Identity = 104/109 (95.41%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAP+LD+LAKKSCNNV
Sbjct: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPVLDELAKKSCNNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           TFLKVDVD+LMSVANELGVGALPSFQFFKNGQLVDKFVGAKKD+LLN V
Sbjct: 61  TFLKVDVDKLMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDVLLNIV 109

[Close]

BLAST of CmoCh04G001800 vs. NCBI nr
Match: XP_038893273.1 (thioredoxin H1-like [Benincasa hispida])

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-43
Identity = 94/117 (80.34%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNN- 60
           MADMGKVVSC TVGSWKQQ LKAKQ+NKL+VVNFTATWC PCR MAP+L+DLA K  NN 
Sbjct: 1   MADMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCGPCRTMAPVLEDLASKMRNND 60

Query: 61  VTFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVEFLYVSS 117
           V FLKVDVDELMSVANELGVGALPSFQFFKNG+LVDKFVGA+KD+L +TV    V S
Sbjct: 61  VLFLKVDVDELMSVANELGVGALPSFQFFKNGKLVDKFVGARKDVLHSTVSKHVVQS 117

[Close]

BLAST of CmoCh04G001800 vs. TAIR 10
Match: AT1G19730.1 (Thioredoxin superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-28
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           A+ G+V+ C T   W  Q  KAK+ NKL+V++FTA+WC PCR +AP+ +DLAKK  ++  
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKD 104
           F KVDVDEL SVA E GV A+P+F F K G++VDK VGA K+
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKE 104

[Close]

BLAST of CmoCh04G001800 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 )

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-27
Identity = 56/108 (51.85%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           ++ G+V++C TV +W +Q  KA +   L+VV+FTA+WC PCR +AP   DLAKK   NV 
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKK-LPNVL 62

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTV 110
           FLKVD DEL SVA++  + A+P+F F K G+++DK VGAKKD L +T+
Sbjct: 63  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 109

[Close]

BLAST of CmoCh04G001800 vs. TAIR 10
Match: AT1G45145.1 (thioredoxin H-type 5 )

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-24
Identity = 49/103 (47.57%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA  G+V++C T+  W ++   A +  KL+V++FTA+WC PCR +AP+  ++AKK   NV
Sbjct: 1   MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKK-FTNV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKD 104
            F K+DVDEL +VA E  V A+P+F F K G ++D+ VGA KD
Sbjct: 61  VFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKD 102

[Close]

BLAST of CmoCh04G001800 vs. TAIR 10
Match: AT5G42980.1 (thioredoxin 3 )

HSP 1 Score: 109.4 bits (272), Expect = 2.7e-24
Identity = 52/110 (47.27%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60
           MA  G+V++C TV  W ++   A +  KL+V++FTATWC PCR +AP+  DLAKK   +V
Sbjct: 1   MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHL-DV 60

Query: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVE 111
            F KVDVDEL +VA E  V A+P+F F K G++ +  VGA K+ ++  +E
Sbjct: 61  VFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLE 109

[Close]

BLAST of CmoCh04G001800 vs. TAIR 10
Match: AT5G39950.1 (thioredoxin 2 )

HSP 1 Score: 94.4 bits (233), Expect = 8.8e-20
Identity = 46/111 (41.44%), Postives = 70/111 (63.06%), Query Frame = 0


Query: 2   ADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNVT 61
           ++  +V+   +   W+  F + K+ NKLLVV+F+A+WC PCR + P +  +A K  N+V 
Sbjct: 22  SEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADK-FNDVD 81

Query: 62  FLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVEFL 113
           F+K+DVDEL  VA E  V A+P+F   K G+ +++ +GAKKD L   V  L
Sbjct: 82  FVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSKL 131

The following BLAST results are available for this feature:

BLAST of CmoCh04G001800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39239	1.5e-27	54.90	Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=1 SV=2	[more]
Q43636	9.5e-27	53.70	Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1	[more]
P29448	1.6e-26	51.85	Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1	[more]
Q39362	3.6e-26	50.93	Thioredoxin H-type 2 OS=Brassica napus OX=3708 GN=THL-2 PE=2 SV=1	[more]
Q96419	8.9e-25	49.54	Thioredoxin H-type OS=Fagopyrum esculentum OX=3617 PE=3 SV=1	[more]

BLAST of CmoCh04G001800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FVM4	4.5e-56	100.00	thioredoxin H1-like OS=Cucurbita moschata OX=3662 GN=LOC111447699 PE=4 SV=1	[more]
A0A6J1KBU8	9.5e-54	95.41	thioredoxin H-type-like OS=Cucurbita maxima OX=3661 GN=LOC111491878 PE=4 SV=1	[more]
A0A5A7U8S0	3.4e-43	81.65	Thioredoxin H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G...	[more]
A0A5D3DCH1	3.4e-43	81.65	Thioredoxin H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G...	[more]
A0A1S3CMM6	3.4e-43	81.65	thioredoxin H1-like OS=Cucumis melo OX=3656 GN=LOC103502660 PE=4 SV=1	[more]

BLAST of CmoCh04G001800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942758.1	9.4e-56	100.00	thioredoxin H1-like [Cucurbita moschata] >KAG7030692.1 hypothetical protein SDJN...	[more]
KAG6600023.1	1.4e-54	98.17	Thioredoxin H4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023549191.1	3.0e-54	97.25	thioredoxin H4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022996723.1	2.0e-53	95.41	thioredoxin H-type-like [Cucurbita maxima]	[more]
XP_038893273.1	1.1e-43	80.34	thioredoxin H1-like [Benincasa hispida]	[more]

BLAST of CmoCh04G001800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19730.1	1.0e-28	54.90	Thioredoxin superfamily protein	[more]
AT3G51030.1	1.2e-27	51.85	thioredoxin H-type 1	[more]
AT1G45145.1	1.6e-24	47.57	thioredoxin H-type 5	[more]
AT5G42980.1	2.7e-24	47.27	thioredoxin 3	[more]
AT5G39950.1	8.8e-20	41.44	thioredoxin 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 38..47 score: 56.94 coord: 30..38 score: 47.59 coord: 78..89 score: 35.09
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..114 e-value: 1.2E-32 score: 114.3
None	No IPR available	PANTHER	PTHR10438:SF431	THIOREDOXIN	coord: 1..115
None	No IPR available	PANTHER	PTHR10438	THIOREDOXIN	coord: 1..115
None	No IPR available	CDD	cd02947	TRX_family	coord: 18..110 e-value: 3.82284E-32 score: 108.029
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 19..107 e-value: 7.2E-25 score: 87.0
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 1..114 score: 11.912779
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 5..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G001800.1	CmoCh04G001800.1	mRNA