CmoCh04G000020 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G000020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
LocationCmo_Chr04: 5855 .. 9068 (-)
RNA-Seq ExpressionCmoCh04G000020
SyntenyCmoCh04G000020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTCTCGGGCTCCTCGAAGAAGATGATAGCGACGCAGGCTGAGATGGTCGAGGCTAGGGTTCCAATCCCTTACCGAGACCAGTGCGCTCACTTGTTGATCCCTCTTAATGTCGCCAATCAGAGTTCTACCTCCCATGGAAATGCGAAAACGAGCGCCATTCCTACGAGAAGTGTGAATATGAGCTCGTTATGGAGAGTACGAAACAGTCCGAGATTTGAGAAAAAGGAAGAACATGTCCTGTTTCATAAAATAAATAAGATAAAGAGGATCATTATTTCCCAAACTTGGGCACTACCAAGGAAACCAGTTATTTCCTAAGCTTGGGCTCTGGAAGCATAAGCTCTTATTGGGTGTCAAAACGGTACTAAAATTGGCCAAGTTGTTTTGAAAACAATTGGATATATCATAAATCTTTCTTTGAAAGACTAAGGACCTATGGTGGGGCATTTTGCAATGACTTGTGCACTATAAAATGAACTTACTCGATTGACTACTTGATAAAGGTCCATTCATCATTTCTTCTGGTCAGCTCAAGACTCTCAAAATTCACCACGAGCTTTATTTGTGAGAGGGACTGATCTTTTGTACCAATTTCTTAAGTTCTAATAGTAGTACCTTTTGTAAGGTTGGGCTACTGGAAGTTCTGTTAGACTCTTAGGATAGTAAAAGGAAATTATGAATGATCCACCCCAAAATGATTATATATTTTCCTCTTCTACCGTTTTAGAGTATGAATCTTTCATGGAAAGTGGGTTATCCTAGTTGCAAAAGATGCTTAAAAGTTACAACCTACAAGGATCTATTTTTCAGTGAACAAAGGATTATTTTCACTTATCATACTGGCCATAAAAGTTTTGTCGTTGTTTAATCTATGCTCTCAGTGCTCATTTTTGTTCAGTTAGAAAAAGAATTCCTCCCTCAGATGGCTCAAAGAATGCTTGGTATATCAAATACGAAAGGTTAGTTGACTTTTCTATTTGTTCGGTGTTCACTGCTTGCATTGTAGTACATCTTCAAAAACTCTTCCCAAATCTGCATCTTTGAACCCAAGCCCAAAGCCTCAAGATAAAACTCTCCTACCTCGAATTTATATAGAGTAATTTATTACAAAAAAAGAATAACAATTGAACTCTCTTTCTAAAGTAACCAGAAAGGAACAATTTTTTTTTTTTTTTTTTTTTGCAACAATCCTTAGATACAGCATTAAACCACCTTGTATTCCTTTCCAACCATATGTTTCTTTAGAAAGTTTTTAAAGCATTAGCCGAAGGCTATCAAAGTGAGTATGGCTCAATAATAATTGACATGTACTCTTGTTCAACGAAATCGTAAAAAGGCCTTCAGTTAATTTTTTAAAAAAGTTTAACAACATTTTCAAGGTGCACTCAAGTGATTGCATATGGTGAGAGATGATATGAGACACTTATCAATTTCTTGAGTGATATCCTAAGTGAGTGTGCTTAATACCTTTCACCCACGAGAGGAGAAGATCAGTCAAATAAAGAAGAGCGGTAAGGGGTGGAGGAGGAAGAGGCAAAAGGCAAAAGGCTCTTTCTTACATTTCCTAGAAGCACTACTGAAGTGCTCACTCACGGCTCCTATAAAAAAAAAAAAAAAAAAAAAAAAGTGCTAATTGCATGTTAGTCAACAAATGGCTGAATTTCTTCCCCAATAAATGTAAGTGTTTTTATTTATAACTTTATTGAGATGGTTGCTTGAGGCACAAGACTAGGTGTGGTTTTTATGCAAAACTAGATGTGGAAGAGAATTAGAAGCAACGATGTTTGGATGGCTTTCCATGGGCTGAGATAACTAGGTTTCATGGGTCTTCTGAGTATATTTTTTAAAAAATAAACATAAAAGACAGAATTAAACTGATAGGGTTCTTTTAGGTGAGTGCCTAATTGGAGGTGCTTGCCCAGCCTAATGTTGATGCGCAAAGGTTCTCGGTGCGCAGGCTCCAAGATGTTGTGTAATCATTTCTATACTATTTGATGCAATGACCACTGTTCTCACTCATAGGTAGTTTTATATAAAGAGCTGCCCCTAGAAAGGGAAAAATAGGAAAAGAGATCATTGCTTACGTTAATAGTCCAACGCACAAGTAGCTTCCTCATTCCATATGAATGCATCTTTCTTCAACCCCTAAGTGAGGGGAACAATTTTCCATATTTAGTGGGAAGTCGTTGGTAGAATCTTATCAATCCAAAGTACGTCCTAACACCTTCGATGATTTCAATGTAAGCTACTGTAGCATTCCTTGGATTTTGGTTGGATCCACTTCAACTCGCACTCCACCTTTGGCTGAGGGAATTGACACTTCTTGAGGTTTACATAAGCTCCCTTACCTTCAAAATTGAGAAAAGGGCTTCCAATTGTAATCCTTGAGAATCTAGATCAACATTGTGGATAAGGATTGTTTAATCAATGCAAACATGCCAACTACCATTTTTTTATTAACCAGGAGGATCAGAATGGGGTTGGTGTTGGGTTCTTGCTGTTGGGGATGTGTGTGGAGGGAGTAGGTGATGAAGGAGTCTTGCGAGGGTGGGTTTGGGATTGGAATTACATTGAAGAAGACTTGGAAGTTGATCTTTCCACTTTATTGCATAATGTCGAGTTACTTGTTGATTGTTTCACCTAAATCTGACAGGATATCATAAATTACTGACATGTCAAGGTTCGCTATTTCCTGGTGCCAGCAATAGGAAGGTATTTGAAAACGTAAACGACTTTTAAATCTGTTGGGCATATCCCTTATTCAGCATTTAGAATAAAGTTATTCACATATCCCTTATTCAGCATTTAGAATAAAGTTATTCAGCATCTGAATGTTGTTGATGTGTACTGATATCAATGGTTTCATAACTTTTCAGATACAATTTTTCCAAGTTCAAGTTTGAAAAGAAATTAAGAGAGTCGTAACTAATCGAGTTTTATGCTCCTCAGGAATTGGATTTGAATTTAGGTCTGTGAAGGGATGTCTTTGATGGGGTTGGTTTTCTGTATCTAGAAAAAAGATGACGAGTTCTCTGCTGTATTTTAAGTTCAAAGTGTTCCTTTTGATTTATGAATTTAAACCACATTATCGTTTCCTTCCACCAAATTTCAAATACTCAAAAAATTGACATATAAGAATTGGATGCTTGGAACTGCAATTAAAACTATTGATATATTTTATATAGGGTTGTATGAATTTGAAATCTAA

mRNA sequence

ATGGAAGTCTCGGGCTCCTCGAAGAAGATGATAGCGACGCAGGCTGAGATGGTCGAGGCTAGGGTTCCAATCCCTTACCGAGACCAGTGCGCTCACTTGTTGATCCCTCTTAATGTCGCCAATCAGAGTTCTACCTCCCATGGAAATGCGAAAACGAGCGCCATTCCTACGAGAAGGTTGTATGAATTTGAAATCTAA

Coding sequence (CDS)

ATGGAAGTCTCGGGCTCCTCGAAGAAGATGATAGCGACGCAGGCTGAGATGGTCGAGGCTAGGGTTCCAATCCCTTACCGAGACCAGTGCGCTCACTTGTTGATCCCTCTTAATGTCGCCAATCAGAGTTCTACCTCCCATGGAAATGCGAAAACGAGCGCCATTCCTACGAGAAGGTTGTATGAATTTGAAATCTAA

Protein sequence

MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQSSTSHGNAKTSAIPTRRLYEFEI
Homology
[Close]
BLAST of CmoCh04G000020 vs. ExPASy Swiss-Prot
Match: Q9SKC9 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana OX=3702 GN=At2g02050 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQ EM  A++ +  RD CAHLLIPLN   Q+
Sbjct: 1  MEVPGSSKKMIATQEEMSAAKIALGSRDMCAHLLIPLNKCRQA 43

[Close]
BLAST of CmoCh04G000020 vs. ExPASy Swiss-Prot
Match: Q54V61 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Dictyostelium discoideum OX=44689 GN=ndufb7 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 4.7e-04
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 0 

Query: 7  SKKMIATQAEMVEARVPIPYRDQCAHLLIPLN 39
          S+KMIATQ +  +  +P+ +RD CAHLLIPLN
Sbjct: 15 SRKMIATQQQCEDKNLPLSFRDYCAHLLIPLN 46

[Close]
BLAST of CmoCh04G000020 vs. ExPASy TrEMBL
Match: A0A6J1K1V5 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Cucurbita maxima OX=3661 GN=LOC111490278 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.4e-12
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLN   QS
Sbjct: 1  MEVQGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNKCRQS 43

[Close]
BLAST of CmoCh04G000020 vs. ExPASy TrEMBL
Match: A0A0A0KMK8 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Cucumis sativus OX=3659 GN=Csa_5G277970 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.4e-12
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLN   QS
Sbjct: 1  MEVQGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNKCRQS 43

[Close]
BLAST of CmoCh04G000020 vs. ExPASy TrEMBL
Match: A0A6J1E0D5 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Momordica charantia OX=3673 GN=LOC111025235 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.4e-12
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLN   QS
Sbjct: 1  MEVQGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNKCRQS 43

[Close]
BLAST of CmoCh04G000020 vs. ExPASy TrEMBL
Match: A0A6J1EVU8 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111436457 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.4e-12
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLN   QS
Sbjct: 1  MEVQGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNKCRQS 43

[Close]
BLAST of CmoCh04G000020 vs. ExPASy TrEMBL
Match: A0A6A1V4A3 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Morella rubra OX=262757 GN=CJ030_MR7G009309 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLN   Q+
Sbjct: 1  MEVEGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNKCRQA 43

[Close]
BLAST of CmoCh04G000020 vs. NCBI nr
Match: KAG7030527.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.4 bits (285), Expect = 3.7e-22
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQSSTSHGNAKTSAIPTR 59
          MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQSSTSHGNAKTSAIP+R
Sbjct: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQSSTSHGNAKTSAIPSR 58

[Close]
BLAST of CmoCh04G000020 vs. NCBI nr
Match: KAG6599852.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.4 bits (285), Expect = 3.7e-22
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQSSTSHGNAKTSAIPTR 59
          MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQSSTSHGNAKTSAIP+R
Sbjct: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQSSTSHGNAKTSAIPSR 58

[Close]
BLAST of CmoCh04G000020 vs. NCBI nr
Match: XP_031741352.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7-like [Cucumis sativus] >XP_031741831.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 isoform X1 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLN   QS
Sbjct: 1  MEVQGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNKCRQS 43

[Close]
BLAST of CmoCh04G000020 vs. NCBI nr
Match: XP_038892568.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Benincasa hispida])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLN   QS
Sbjct: 1  MEVQGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNKCRQS 43

[Close]
BLAST of CmoCh04G000020 vs. NCBI nr
Match: XP_022930015.1 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Cucurbita moschata] >XP_022994625.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Cucurbita maxima] >XP_023553585.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLN   QS
Sbjct: 1  MEVQGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNKCRQS 43

[Close]
BLAST of CmoCh04G000020 vs. TAIR 10
Match: AT2G02050.1 (NADH-ubiquinone oxidoreductase B18 subunit, putative )

HSP 1 Score: 56.6 bits (135), Expect = 8.6e-09
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQ EM  A++ +  RD CAHLLIPLN   Q+
Sbjct: 1  MEVPGSSKKMIATQEEMSAAKIALGSRDMCAHLLIPLNKCRQA 43

The following BLAST results are available for this feature:
BLAST of CmoCh04G000020 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SKC91.2e-0765.12NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thali... [more]
Q54V614.7e-0459.38NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Dictyostelium dis... [more]
BLAST of CmoCh04G000020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K1V58.4e-1290.70NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Cucurbita maxima ... [more]
A0A0A0KMK88.4e-1290.70NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Cucumis sativus O... [more]
A0A6J1E0D58.4e-1290.70NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Momordica charant... [more]
A0A6J1EVU88.4e-1290.70NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Cucurbita moschat... [more]
A0A6A1V4A31.9e-1188.37NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Morella rubra OX=... [more]
BLAST of CmoCh04G000020 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030527.13.7e-2298.28NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7, partial [Cucurbita ... [more]
KAG6599852.13.7e-2298.28NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7, partial [Cucurbita ... [more]
XP_031741352.11.7e-1190.70NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7-like [Cucumis sativu... [more]
XP_038892568.11.7e-1190.70NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Benincasa hispida][more]
XP_022930015.11.7e-1190.70NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Cucurbita moschata]... [more]
BLAST of CmoCh04G000020 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G02050.18.6e-0965.12NADH-ubiquinone oxidoreductase B18 subunit, putative [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008698NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7, NDUB7PFAMPF05676NDUF_B7coord: 11..40
e-value: 1.4E-10
score: 40.7
IPR008698NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7, NDUB7PANTHERPTHR20900NADH:UBIQUINONE OXIDOREDUCTASE B18-LIKE SUBUNITcoord: 1..43
NoneNo IPR availablePANTHERPTHR20900:SF2BNAC09G20920D PROTEINcoord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G000020.1CmoCh04G000020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005758 mitochondrial intermembrane space
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005739 mitochondrion