CmoCh03G014170 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G014170
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	BEST Arabidopsis thaliana protein match is: Galact s in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Location	Cmo_Chr03: 10257897 .. 10258785 (+)
RNA-Seq Expression	CmoCh03G014170
Synteny	CmoCh03G014170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATTCCCGTATAGCAAGGTTCGTTACCGAGGTGGCGCCACCACAGATTATCAGTGTCATGAGACGCCGAACGTCAAAAGTGTTGGATACCATCAGTGAAGAGGAGAGAGATGGCAGCAAGAATGAGTATCCTGCTTCTCCAAGAAGCCTACCATCATCAACAACCCCTGCGCCTATGGTTGTTAGTGCCAATTCTATGTACTTCGTCAGAAACATAAATAGATCTTTCTCCAAATTCAATGATTGAATAATTTGTTGTCTGGAGTGAAAATTGGGACTTTGAGGCTTCATCACCATATCCTGTAGTTGAATTTTCATGTCGTTGTGGGATGAGTTCCTGAAATTTGTGCTCGCACAGTTTCCAGTGAACTTGCTAAAAGACTGTAATGCAAAATCTTATGTATAGTTTGTCGAGTTTGAAATGAGGAATTTGTAATGTTAAAATGCATAAGAATACTGTCATTCAGTCCAACGGTTTCAACGCAGATTAGTCAACAGAACATGCAAGATTAAACATTCAAATCATGCCTGCCATTTAATCTTTCCCTACACGGCCTAAACGAGTTTTTCATATGTTACGAAATGGGACATTAAACTCTCAGAGGAACTTGTTTGTTAGTACCAACCTTTTTCTTTGGAGGAGTTCGAATCTTTTCGTTTGCGCACTCTGGAAGACATGAATGTGCTTTCTTTCTGATTCAACCTTTTCCTTCAGTTTCTCTAGGGCTGTTAATCATTACAAATCAAAATAAGAAAAATGTATGGAGAACATCTATATGAACAAAAATAATAGAGGATTATTTATTTATTTATGTAACAGCTTCGCTGGAAACAACAATCCTTCCCAACAAATTAACCCAGCAACCTTCTTTACTTTTGGATAA

mRNA sequence

ATGGCAAATTCCCGTATAGCAAGGTTCGTTACCGAGGTGGCGCCACCACAGATTATCAGTGTCATGAGACGCCGAACGTCAAAAGTGTTGGATACCATCAGTGAAGAGGAGAGAGATGGCAGCAAGAATGAGTATCCTGCTTCTCCAAGAAGCCTACCATCATCAACAACCCCTGCGCCTATGGTTGTTAGTGCCAATTCTATCTTCGCTGGAAACAACAATCCTTCCCAACAAATTAACCCAGCAACCTTCTTTACTTTTGGATAA

Coding sequence (CDS)

ATGGCAAATTCCCGTATAGCAAGGTTCGTTACCGAGGTGGCGCCACCACAGATTATCAGTGTCATGAGACGCCGAACGTCAAAAGTGTTGGATACCATCAGTGAAGAGGAGAGAGATGGCAGCAAGAATGAGTATCCTGCTTCTCCAAGAAGCCTACCATCATCAACAACCCCTGCGCCTATGGTTGTTAGTGCCAATTCTATCTTCGCTGGAAACAACAATCCTTCCCAACAAATTAACCCAGCAACCTTCTTTACTTTTGGATAA

Protein sequence

MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAPMVVSANSIFAGNNNPSQQINPATFFTFG

Homology

[Close]

BLAST of CmoCh03G014170 vs. ExPASy TrEMBL
Match: A0A0A0KI68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524100 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.7e-20
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPAS-PRSLPSSTTPA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEE+R+ +KNEYPA+ PRSL SSTT A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60

Query: 61 PMVVSANSIFAGNN--NPSQQIN 81
           MVV+ANS++   N   P  +IN
Sbjct: 61 SMVVAANSMYFVRNISRPFSKIN 83

[Close]

BLAST of CmoCh03G014170 vs. ExPASy TrEMBL
Match: A0A5D3CN92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009220 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASP-RSLPSSTTPA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEE+R+ +KNEYPA+P RSL SS+T A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60

Query: 61 PMVVSANSIFAGNN 74
           M V ANS++   N
Sbjct: 61 SMAVGANSMYFVRN 74

[Close]

BLAST of CmoCh03G014170 vs. ExPASy TrEMBL
Match: A0A7J7GTQ9 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_018137 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERD-GSKNEYPASPRSLPSSTTPA 60
          MAN+RIARFVTEVAPPQ +SVMR R SK+LDTI+EEERD GS +    SP+S  SS++  
Sbjct: 1  MANARIARFVTEVAPPQFVSVMRHRASKMLDTINEEERDIGSNDSLSLSPKSSSSSSSST 60

Query: 61 PMVVSANSI 69
          P   S ++I
Sbjct: 61 PTSASPSNI 69

[Close]

BLAST of CmoCh03G014170 vs. ExPASy TrEMBL
Match: W9QKX7 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011438 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.1e-10
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAP 60
          MANSRIARF+TEVAPPQ +SVMR RTSKVLDTI EEERD   N+   SP + P+ T P+ 
Sbjct: 1  MANSRIARFITEVAPPQFVSVMRHRTSKVLDTIKEEERDVCAND---SPNTSPAKTIPSA 60

Query: 61 MVVSANS 68
             S+ S
Sbjct: 61 HAFSSAS 64

[Close]

BLAST of CmoCh03G014170 vs. ExPASy TrEMBL
Match: A0A3N7FR06 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081001 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.6e-10
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERD-GSKNEYPASPRSLPSSTTPA 60
          MANSRIA+F+TE APPQ ISVMR RTSK+LDTISEE+RD  + + +P +P S    TT A
Sbjct: 1  MANSRIAKFITEAAPPQYISVMRHRTSKMLDTISEEDRDVAASDPFPMAPTSSTIVTTSA 60

Query: 61 PMVVSANSIF 70
            V + NS +
Sbjct: 61 TSVAAKNSTY 70

[Close]

BLAST of CmoCh03G014170 vs. NCBI nr
Match: KAG7034740.1 (hypothetical protein SDJN02_04470, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 4.0e-27
Identity = 70/78 (89.74%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAP 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAP
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAP 60

Query: 61 MVVSANSIFAGNNNPSQQ 79
          MVVSANSI   + N ++Q
Sbjct: 61 MVVSANSIIERDANQAEQ 78

[Close]

BLAST of CmoCh03G014170 vs. NCBI nr
Match: KGN49420.1 (hypothetical protein Csa_003492 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-19
Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPAS-PRSLPSSTTPA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEE+R+ +KNEYPA+ PRSL SSTT A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPPRSLSSSTTSA 60

Query: 61 PMVVSANSIFAGNN--NPSQQIN 81
           MVV+ANS++   N   P  +IN
Sbjct: 61 SMVVAANSMYFVRNISRPFSKIN 83

[Close]

BLAST of CmoCh03G014170 vs. NCBI nr
Match: KAG6594447.1 (hypothetical protein SDJN03_11000, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.5 bits (262), Expect = 2.3e-19
Identity = 63/77 (81.82%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASPRSLPSSTTPAP 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERD SK EYPASP S   STTPAP
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDCSKYEYPASPISPSPSTTPAP 60

Query: 61 MVVSANS-IFAGNNNPS 77
            VSANS  F  N N S
Sbjct: 61 ATVSANSRYFVRNINRS 77

[Close]

BLAST of CmoCh03G014170 vs. NCBI nr
Match: KAA0052524.1 (hypothetical protein E6C27_scaffold120G001250 [Cucumis melo var. makuwa] >TYK13301.1 hypothetical protein E5676_scaffold255G009220 [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 4.4e-18
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNEYPASP-RSLPSSTTPA 60
          MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEE+R+ +KNEYPA+P RSL SS+T A
Sbjct: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEDRECNKNEYPAAPQRSLSSSSTSA 60

Query: 61 PMVVSANSIFAGNN 74
           M V ANS++   N
Sbjct: 61 SMAVGANSMYFVRN 74

[Close]

BLAST of CmoCh03G014170 vs. NCBI nr
Match: KAG5235151.1 (galactosyltransferase family [Salix suchowensis])

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 1   MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERDGSKNE-YPASPRSLPSSTTPA 60
           MANSRIA+F+TE APPQ ISVMR RTSK+LDTISEE+RD + ++ +P SP S    TT A
Sbjct: 116 MANSRIAKFITEAAPPQYISVMRHRTSKMLDTISEEDRDAAASDPFPKSPASSTIVTTTA 175

Query: 61  PMVVSANSIF 70
             V + NS F
Sbjct: 176 APVPAKNSTF 185

[Close]

BLAST of CmoCh03G014170 vs. TAIR 10
Match: AT1G30260.1 (BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-11
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 1  MANSRIARFVTEVAPPQIISVMRRRTSKVLDTISEEERD-GSKNEYPASPRSLPSS---T 60
          MA SR+ARF+TEVAPPQ ++VMRRRT+KVLDTI EEER+ G+ + +P+S  S   S   T
Sbjct: 1  MATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISSPFT 60

Query: 61 TPAPMVVSANSIFA 71
          +P    VS+ S  A
Sbjct: 61 SPYSSSVSSASASA 74

[Close]

BLAST of CmoCh03G014170 vs. TAIR 10
Match: AT4G21060.1 (Galactosyltransferase family protein )

HSP 1 Score: 47.4 bits (111), Expect = 7.0e-06
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 1  MANSRIARFVTEVAPPQIISVMRRR--TSKVLDTISEEE 38
          MA SR+ARFV+EVAPPQ ++VMRR     + LDTI EEE
Sbjct: 1  MATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEE 39

The following BLAST results are available for this feature:

BLAST of CmoCh03G014170 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G014170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI68	8.7e-20	74.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524100 PE=4 SV=1	[more]
A0A5D3CN92	2.1e-18	77.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A7J7GTQ9	1.6e-10	60.87	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_018137 PE=4 SV=1	[more]
W9QKX7	2.1e-10	62.69	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011438 PE=4 SV=1	[more]
A0A3N7FR06	3.6e-10	58.57	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G081001 PE=4 ...	[more]

BLAST of CmoCh03G014170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034740.1	4.0e-27	89.74	hypothetical protein SDJN02_04470, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN49420.1	1.8e-19	74.70	hypothetical protein Csa_003492 [Cucumis sativus]	[more]
KAG6594447.1	2.3e-19	81.82	hypothetical protein SDJN03_11000, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0052524.1	4.4e-18	77.03	hypothetical protein E6C27_scaffold120G001250 [Cucumis melo var. makuwa] >TYK133...	[more]
KAG5235151.1	2.0e-10	61.43	galactosyltransferase family [Salix suchowensis]	[more]

BLAST of CmoCh03G014170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30260.1	2.5e-11	55.41	BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein...	[more]
AT4G21060.1	7.0e-06	64.10	Galactosyltransferase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..44
None	No IPR available	PANTHER	PTHR35101:SF12	OS02G0162600 PROTEIN	coord: 1..73
None	No IPR available	PANTHER	PTHR35101	OS02G0162600 PROTEIN	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G014170.1	CmoCh03G014170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016740	transferase activity