CmoCh03G014080 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G014080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr03: 10240280 .. 10241415 (-)
RNA-Seq ExpressionCmoCh03G014080
SyntenyCmoCh03G014080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGGAACGGCGGAGTGTCGGAGTTTTCCCGATAAGTCCGGTGACCAAAAAAAAATAAATAAATAAATAAATAAATATCTCCTTCACTTATTCACTGTCTTCTTCTTTTCTTCAGTTCTTCGCTTTCATTTCTCAACTCTTTCTTTTTCTCTCTCAATTTTCCCGCCGTTCCGCTCCAACTATCTTCCCGGACTGTAGACTGGATCGTTTTGTTTCACAAGGATTTGAAGCGCAGGCATCGTATATTCTCTATTCTCTACGAAATTCCGCTGTCTTTGTATCATCACACAATTTTTTATTTGAAATTTTGTCTATTGCTATCAAGACGTGATGTGATTTTAGCTTGGAGGTTATTGATTTTAGCTTTTTATCTATTGGAACCAAGACGTGATGTGATTTTGAAATTTTGTCTATTGCTATCAAGATTTAATGTGATTTCAGCTTTTTATCTATTGGTATCAATACGTGATGTGATTTGAAACTTTTGTGTTACTTGCAGTTCGAGGAGAAGAAAATTACATGTCAGTGCTTGAGAGATTGAGCTGCTTGCGGGCTTTTCTCTTTCTTGTAATCGAGGTATATATGTTGTTTAGAGAACGATACCTAGCTAGATGAGTGTGAATCTAATCTAGGCTCGGAAATTTGTACGGTTTAATTTCAGTTTTGTGACTGTGTATTCTTTGTTTGATTTTTCGATGGAATAGTTGAAATTTGTTTTTAGTCTCTCGTTTTTCTATTCAACTAAAATTTTGAGCACGAAGAAGATGATTTCTACTTTCAGTGGTTAATTTCGGTTCAAGGGAATGCAGATCTGCAAAGGGTTTTGAATGTAGCTGAGTAATTTGAAGAAATTAAACAAAAAAAAATTGTCCAGGTTATGTAAATTCTAGGTTTAGCGATTTGCCTCTCAGTGATAAACACCTGTCATCTGAATTATTGATGTATGCGTAATCCGTTCTCCGGACTCAACCTTGTCCTCCAGTTTAATAAATTTAATAGTTTCTTGTTCGTGCAAGTGTGGATAATTTGGAAACATGAATTTGTTGGTTTCTTTTGATTTTTTTTAATAAAAAATATTTCTCAGAGTTGTCGTGTTAATGTATTTTGTCTGCCATTTTTAGGACCAGAGATGA

mRNA sequence

ATGCAGGGAACGGCGGAGTGTCGGAGTTTTCCCGATAATTCTTCGCTTTCATTTCTCAACTCTTTCTTTTTCTCTCTCAATTTTCCCGCCGTTCCGCTCCAACTATCTTCCCGGACTGTAGACTGGATCGTTTTGTTTCACAAGGATTTGAAGCGCAGGCATCTTCGAGGAGAAGAAAATTACATGTCAGTGCTTGAGAGATTGAGCTGCTTGCGGGCTTTTCTCTTTCTTGTAATCGAGGACCAGAGATGA

Coding sequence (CDS)

ATGCAGGGAACGGCGGAGTGTCGGAGTTTTCCCGATAATTCTTCGCTTTCATTTCTCAACTCTTTCTTTTTCTCTCTCAATTTTCCCGCCGTTCCGCTCCAACTATCTTCCCGGACTGTAGACTGGATCGTTTTGTTTCACAAGGATTTGAAGCGCAGGCATCTTCGAGGAGAAGAAAATTACATGTCAGTGCTTGAGAGATTGAGCTGCTTGCGGGCTTTTCTCTTTCTTGTAATCGAGGACCAGAGATGA

Protein sequence

MQGTAECRSFPDNSSLSFLNSFFFSLNFPAVPLQLSSRTVDWIVLFHKDLKRRHLRGEENYMSVLERLSCLRAFLFLVIEDQR
Homology
[Close]
BLAST of CmoCh03G014080 vs. NCBI nr
Match: KAG6581440.1 (hypothetical protein SDJN03_21442, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-05
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 52 RRHLRGEENYMSVLERLSCLRAFLFLVIEDQR 84
          R   RGEENYMSVLERLSCLRAFLFLVIEDQR
Sbjct: 37 RLGFRGEENYMSVLERLSCLRAFLFLVIEDQR 68

The following BLAST results are available for this feature:
BLAST of CmoCh03G014080 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G014080 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G014080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581440.12.4e-0590.63hypothetical protein SDJN03_21442, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh03G014080 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G014080.1CmoCh03G014080.1mRNA