CmoCh03G013330 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G013330
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Transcription factor bHLH35-like protein
Location	Cmo_Chr03: 9929314 .. 9930424 (+)
RNA-Seq Expression	CmoCh03G013330
Synteny	CmoCh03G013330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGATGGGGTTCCTCTGTTTTCGAGTTCACATGACAACAAGAGGAAAGTAGCTGAGTGATTATTTCGATCTGGCCTTTCAAAACACACACACCCCCCCCAACTTTTTATGCTATAAAAAGCCAGACCCTTCATTTCAGGTCATATTCTTCACTAACTTGTCTTAATTGGTAAGCAAGTTCCAGCCAAACAGAGACACAGACATGGTTTCTACGTTTCAGAAAAGATTCGACTCACGCAAGAAGCTACGCCTTGTTCGATCACTACCCACATACCAATCCTCTGTAATAATTCCTAAAACATTCTGTTTTGGTTATGATTTTTGTCTCTGTTTTGTCACTTCAGTTTGTTTGGGCCATTAGTTATCAAGTCCTCTGTTTATGCAGGGAAAACAGAGCAGTGAGTTCTGGAATGCTGTTCTCTTCCTTCATAAGCTCAAGCTCAAGCTGGAAGCAATTGAGAGAGAGTATTCAAATCTATTGTCCATGAAAAGAGAATACTTAAACTCTGTAAAGCAAATTCATGCCCCTAAGGTCCTTCCTTTCCCTCCCTCTTTTAAACAATTCAAATTCTTCCTAATAGTTAATATATATTACAGAAAATTAAATGGTTTATGAATGCTTGAAAGCAGGAAGTGAAGGTTGAGAAGGTCGGAGAAGAGTTGAGAGTGAAAGTGAGATGCGAAAAGGGAGGGGACAGATTGGTTACAGTGTTGGAGGCATTTGACAAAATGGGTCTTAATGTTCTGCAAGCTAAAGTTTCGTGTAGTGAATGTTTTTCCATGGAAGCCATTGCTGTCGCTGAAGATGAACAGTCGCTTAACATAAGTGATATAACTGAAGCTATCAATGCAGCCATTGATGGAAAATCATTGGCTGCAAATCAGCAGCAGAAAGAAACTCCTAAGAAAGATGATGAAATTTAGTCACTTCCTAAGCTATCAGTTGAATGAGAGTGTTTCTTTCCATCGCAATCTCTTGTATTCTTCTTTCTTTCCTGCAAATTCAAAAAACAGAGTGGTTTTGGAAAAAAAAACAGAGTGGTTTTGGAAGGAAGAGGCTGAAACTGAAACAGCCGGTAAATATGGAGCATATTAAATTAGATTCTAAAT

mRNA sequence

GAGAGATGGGGTTCCTCTGTTTTCGAGTTCACATGACAACAAGAGGAAAGTAGCTGAGTGATTATTTCGATCTGGCCTTTCAAAACACACACACCCCCCCCAACTTTTTATGCTATAAAAAGCCAGACCCTTCATTTCAGGTCATATTCTTCACTAACTTGTCTTAATTGGTAAGCAAGTTCCAGCCAAACAGAGACACAGACATGGTTTCTACGTTTCAGAAAAGATTCGACTCACGCAAGAAGCTACGCCTTGTTCGATCACTACCCACATACCAATCCTCTGGAAAACAGAGCAGTGAGTTCTGGAATGCTGTTCTCTTCCTTCATAAGCTCAAGCTCAAGCTGGAAGCAATTGAGAGAGAGTATTCAAATCTATTGTCCATGAAAAGAGAATACTTAAACTCTGTAAAGCAAATTCATGCCCCTAAGGAAGTGAAGGTTGAGAAGGTCGGAGAAGAGTTGAGAGTGAAAGTGAGATGCGAAAAGGGAGGGGACAGATTGGTTACAGTGTTGGAGGCATTTGACAAAATGGGTCTTAATGTTCTGCAAGCTAAAGTTTCGTGTAGTGAATGTTTTTCCATGGAAGCCATTGCTGTCGCTGAAGATGAACAGTCGCTTAACATAAGTGATATAACTGAAGCTATCAATGCAGCCATTGATGGAAAATCATTGGCTGCAAATCAGCAGCAGAAAGAAACTCCTAAGAAAGATGATGAAATTTAGTCACTTCCTAAGCTATCAGTTGAATGAGAGTGTTTCTTTCCATCGCAATCTCTTGTATTCTTCTTTCTTTCCTGCAAATTCAAAAAACAGAGTGGTTTTGGAAAAAAAAACAGAGTGGTTTTGGAAGGAAGAGGCTGAAACTGAAACAGCCGGTAAATATGGAGCATATTAAATTAGATTCTAAAT

Coding sequence (CDS)

ATGGTTTCTACGTTTCAGAAAAGATTCGACTCACGCAAGAAGCTACGCCTTGTTCGATCACTACCCACATACCAATCCTCTGGAAAACAGAGCAGTGAGTTCTGGAATGCTGTTCTCTTCCTTCATAAGCTCAAGCTCAAGCTGGAAGCAATTGAGAGAGAGTATTCAAATCTATTGTCCATGAAAAGAGAATACTTAAACTCTGTAAAGCAAATTCATGCCCCTAAGGAAGTGAAGGTTGAGAAGGTCGGAGAAGAGTTGAGAGTGAAAGTGAGATGCGAAAAGGGAGGGGACAGATTGGTTACAGTGTTGGAGGCATTTGACAAAATGGGTCTTAATGTTCTGCAAGCTAAAGTTTCGTGTAGTGAATGTTTTTCCATGGAAGCCATTGCTGTCGCTGAAGATGAACAGTCGCTTAACATAAGTGATATAACTGAAGCTATCAATGCAGCCATTGATGGAAAATCATTGGCTGCAAATCAGCAGCAGAAAGAAACTCCTAAGAAAGATGATGAAATTTAG

Protein sequence

MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI

Homology

[Close]

BLAST of CmoCh03G013330 vs. ExPASy TrEMBL
Match: A0A6J1ED01 (uncharacterized protein LOC111433204 OS=Cucurbita moschata OX=3662 GN=LOC111433204 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.0e-85
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60
           MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS
Sbjct: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60

Query: 61  MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120
           MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS
Sbjct: 61  MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120

Query: 121 CSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI 174
           CSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI
Sbjct: 121 CSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI 173

[Close]

BLAST of CmoCh03G013330 vs. ExPASy TrEMBL
Match: A0A6J1IR65 (uncharacterized protein LOC111478631 OS=Cucurbita maxima OX=3661 GN=LOC111478631 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.4e-84
Identity = 170/173 (98.27%), Postives = 171/173 (98.84%), Query Frame = 0


Query: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60
           MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS
Sbjct: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60

Query: 61  MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120
           MKREYLNSVKQIHAPKEVKVEKVGEE RVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS
Sbjct: 61  MKREYLNSVKQIHAPKEVKVEKVGEEFRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120

Query: 121 CSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI 174
           CSECFSMEAIAVAEDEQSLNI DITEAINAAIDGKSLAANQQQKETP+KDDEI
Sbjct: 121 CSECFSMEAIAVAEDEQSLNICDITEAINAAIDGKSLAANQQQKETPEKDDEI 173

[Close]

BLAST of CmoCh03G013330 vs. ExPASy TrEMBL
Match: A0A5A7UBN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008340 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 6.6e-64
Identity = 133/174 (76.44%), Postives = 151/174 (86.78%), Query Frame = 0


Query: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60
           MVST QKRFDSR KLRLVRSLPTY+SSG+Q+  FWNAVLF+HKLKLKLEAIEREYSNLL+
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLPTYESSGRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLN 60

Query: 61  MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120
           MKREYLNS+KQ H+ KEVKVEK GEE RVKVRCEKGGDRLV+VLEAF+KMGLNV++A+VS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CSECFSMEAIAVAED-EQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI 174
           C+ECF MEAIAVAED  Q LN+SDIT+AIN AID K LA NQ   + P  D ++
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHNDIPHNDAQL 174

[Close]

BLAST of CmoCh03G013330 vs. ExPASy TrEMBL
Match: E5GC31 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 8.6e-64
Identity = 133/174 (76.44%), Postives = 150/174 (86.21%), Query Frame = 0


Query: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60
           MVST QKRFDSR KLRLVRSLPTY+SSG+Q+  FWNAVLF+HKLKLKLEAIEREYSNLL 
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLPTYESSGRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLD 60

Query: 61  MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120
           MKREYLNS+KQ H+ KEVKVEK GEE RVKVRCEKGGDRLV+VLEAF+KMGLNV++A+VS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CSECFSMEAIAVAED-EQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI 174
           C+ECF MEAIAVAED  Q LN+SDIT+AIN AID K LA NQ   + P  D ++
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHNDIPHNDAQL 174

[Close]

BLAST of CmoCh03G013330 vs. ExPASy TrEMBL
Match: A0A1S3B049 (uncharacterized protein LOC103484437 OS=Cucumis melo OX=3656 GN=LOC103484437 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 8.6e-64
Identity = 133/174 (76.44%), Postives = 150/174 (86.21%), Query Frame = 0


Query: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60
           MVST QKRFDSR KLRLVRSLPTY+SSG+Q+  FWNAVLF+HKLKLKLEAIEREYSNLL 
Sbjct: 1   MVSTLQKRFDSRNKLRLVRSLPTYESSGRQTCVFWNAVLFIHKLKLKLEAIEREYSNLLD 60

Query: 61  MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120
           MKREYLNS+KQ H+ KEVKVEK GEE RVKVRCEKGGDRLV+VLEAF+KMGLNV++A+VS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 121 CSECFSMEAIAVAED-EQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI 174
           C+ECF MEAIAVAED  Q LN+SDIT+AIN AID K LA NQ   + P  D ++
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHNDIPHNDAQL 174

[Close]

BLAST of CmoCh03G013330 vs. NCBI nr
Match: XP_022925942.1 (uncharacterized protein LOC111433204 [Cucurbita moschata])

HSP 1 Score: 325.9 bits (834), Expect = 2.2e-85
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60
           MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS
Sbjct: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60

Query: 61  MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120
           MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS
Sbjct: 61  MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120

Query: 121 CSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI 174
           CSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI
Sbjct: 121 CSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI 173

[Close]

BLAST of CmoCh03G013330 vs. NCBI nr
Match: KAG7034655.1 (hypothetical protein SDJN02_04385, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 324.3 bits (830), Expect = 6.3e-85
Identity = 172/173 (99.42%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60
           MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS
Sbjct: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60

Query: 61  MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120
           MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS
Sbjct: 61  MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120

Query: 121 CSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI 174
           CSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETP+KDDEI
Sbjct: 121 CSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPEKDDEI 173

[Close]

BLAST of CmoCh03G013330 vs. NCBI nr
Match: XP_023544520.1 (uncharacterized protein LOC111804071 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321.2 bits (822), Expect = 5.3e-84
Identity = 170/173 (98.27%), Postives = 172/173 (99.42%), Query Frame = 0


Query: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60
           MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS
Sbjct: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60

Query: 61  MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120
           MKREYLNSVKQIHAPKEVKVEKVGEE RVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS
Sbjct: 61  MKREYLNSVKQIHAPKEVKVEKVGEEFRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120

Query: 121 CSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI 174
           CSECFSMEAIAVAEDEQSLNISDITEAINAAI+GKSLAANQQQKETP+KDDEI
Sbjct: 121 CSECFSMEAIAVAEDEQSLNISDITEAINAAIEGKSLAANQQQKETPEKDDEI 173

[Close]

BLAST of CmoCh03G013330 vs. NCBI nr
Match: XP_022978770.1 (uncharacterized protein LOC111478631 [Cucurbita maxima])

HSP 1 Score: 320.9 bits (821), Expect = 7.0e-84
Identity = 170/173 (98.27%), Postives = 171/173 (98.84%), Query Frame = 0


Query: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60
           MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS
Sbjct: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60

Query: 61  MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120
           MKREYLNSVKQIHAPKEVKVEKVGEE RVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS
Sbjct: 61  MKREYLNSVKQIHAPKEVKVEKVGEEFRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120

Query: 121 CSECFSMEAIAVAEDEQSLNISDITEAINAAIDGKSLAANQQQKETPKKDDEI 174
           CSECFSMEAIAVAEDEQSLNI DITEAINAAIDGKSLAANQQQKETP+KDDEI
Sbjct: 121 CSECFSMEAIAVAEDEQSLNICDITEAINAAIDGKSLAANQQQKETPEKDDEI 173

[Close]

BLAST of CmoCh03G013330 vs. NCBI nr
Match: KAG6581368.1 (hypothetical protein SDJN03_21370, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 274.6 bits (701), Expect = 5.7e-70
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 28  GKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEEL 87
           GKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEEL
Sbjct: 3   GKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLSMKREYLNSVKQIHAPKEVKVEKVGEEL 62

Query: 88  RVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEA 147
           RVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEA
Sbjct: 63  RVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVSCSECFSMEAIAVAEDEQSLNISDITEA 122

Query: 148 INAAIDGKSLAANQQQKETPKKDDEI 174
           INAAIDGKSLAANQQQKETP+KDDEI
Sbjct: 123 INAAIDGKSLAANQQQKETPEKDDEI 148

[Close]

BLAST of CmoCh03G013330 vs. TAIR 10
Match: AT1G29270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 98.2 bits (243), Expect = 6.8e-21
Identity = 59/154 (38.31%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 1   MVSTFQKRFDSRKKLRLVRSLPTYQ-SSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLL 60
           MV++ QK+  S+ K   +++L  ++ S  +QS     A+L++  LKL++EA++REY +L 
Sbjct: 1   MVASEQKKRASQGKPHFLKNLTHFKFSIHEQSMVIREALLYIAMLKLEIEALQREYEDLK 60

Query: 61  SMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKV 120
             K+E       +H  +EVKVEK+GE  +VK++  +G + LV +LEAF++MGLNV QA+ 
Sbjct: 61  ITKKE------SLHQFQEVKVEKIGEMFQVKIKSPRGENNLVNILEAFEEMGLNVAQARA 120

Query: 121 SCSECFSMEAIAVAEDEQSL-NISDITEAINAAI 153
           SC + F+MEAI   + +  L ++ D+T+ +  A+
Sbjct: 121 SCLDSFAMEAIVAPQSKDKLCSVDDLTQTLVKAL 148

[Close]

BLAST of CmoCh03G013330 vs. TAIR 10
Match: AT2G40435.1 (BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-08
Identity = 48/154 (31.17%), Postives = 83/154 (53.90%), Query Frame = 0


Query: 1   MVSTFQKRFDSRKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLLS 60
           MVS  QKR   ++K +L+RS+ T   +   +S   +A  ++ KLK K+E   ++ +    
Sbjct: 1   MVSREQKRGSLQEKFQLLRSI-TNSHAENDTSIIMDASKYIQKLKQKVERFNQDPT---- 60

Query: 61  MKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKG-GDRLVTVLEAFDKMGLNVLQAKV 120
              E  +S         V VE + +   + V   K     LV+VLEAF+ +GLNVL+A+ 
Sbjct: 61  --AEQSSSEPTDPKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARA 120

Query: 121 SCSECFSMEAIAVA-EDEQSLNISDITEAINAAI 153
           SC++ FS+ A+ +  ED ++++   + +A+  AI
Sbjct: 121 SCTDSFSLHAMGLENEDGENMDAEAVKQAVTDAI 147

[Close]

BLAST of CmoCh03G013330 vs. TAIR 10
Match: AT3G56220.1 (transcription regulators )

HSP 1 Score: 50.1 bits (118), Expect = 2.1e-06
Identity = 48/156 (30.77%), Postives = 81/156 (51.92%), Query Frame = 0


Query: 1   MVSTFQKRFDS-RKKLRLVRSLPTYQSSGKQSSEFWNAVLFLHKLKLKLEAIEREYSNLL 60
           MVS   KR  S R+K  L+RS+ T   +  ++S   +A  ++ KLK K+E I    ++  
Sbjct: 1   MVSREHKRGSSLREKFHLLRSI-TDSHAESETSIIVDASKYIKKLKQKVEKINNATTSEQ 60

Query: 61  SMKREYLNSVKQIHAPKEVKVEKVGEELRVKVRCEKG-GDRLVTVLEAFDKMGLNVLQAK 120
           S +       +       V VE + +   +KV   K     LV VLE F+ +GL+V++A+
Sbjct: 61  SFR-------ESSDPNPMVTVETLEKGFMIKVMSRKNEAGMLVCVLETFEDLGLDVVEAR 120

Query: 121 VSCSECFSMEAIAVA--EDEQSLNISDITEAINAAI 153
           VSC++ FS+ AI  +  +D   ++   + +A+  AI
Sbjct: 121 VSCTDTFSLHAIGSSNNDDGDCIDAEAVKQAVAEAI 148

The following BLAST results are available for this feature:

BLAST of CmoCh03G013330 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G013330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ED01	1.0e-85	100.00	uncharacterized protein LOC111433204 OS=Cucurbita moschata OX=3662 GN=LOC1114332...	[more]
A0A6J1IR65	3.4e-84	98.27	uncharacterized protein LOC111478631 OS=Cucurbita maxima OX=3661 GN=LOC111478631...	[more]
A0A5A7UBN8	6.6e-64	76.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GC31	8.6e-64	76.44	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3B049	8.6e-64	76.44	uncharacterized protein LOC103484437 OS=Cucumis melo OX=3656 GN=LOC103484437 PE=...	[more]

BLAST of CmoCh03G013330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925942.1	2.2e-85	100.00	uncharacterized protein LOC111433204 [Cucurbita moschata]	[more]
KAG7034655.1	6.3e-85	99.42	hypothetical protein SDJN02_04385, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023544520.1	5.3e-84	98.27	uncharacterized protein LOC111804071 [Cucurbita pepo subsp. pepo]	[more]
XP_022978770.1	7.0e-84	98.27	uncharacterized protein LOC111478631 [Cucurbita maxima]	[more]
KAG6581368.1	5.7e-70	99.32	hypothetical protein SDJN03_21370, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh03G013330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29270.1	6.8e-21	38.31	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G40435.1	3.9e-08	31.17	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G5...	[more]
AT3G56220.1	2.1e-06	30.77	transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..68
None	No IPR available	PANTHER	PTHR31945:SF27	TRANSCRIPTION FACTOR BHLH35-LIKE PROTEIN	coord: 1..156
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 1..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G013330.1	CmoCh03G013330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding