CmoCh03G012490 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G012490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr03: 9596858 .. 9598542 (-)
RNA-Seq Expression	CmoCh03G012490
Synteny	CmoCh03G012490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGAATGTCCAAAAGCTGAAAAGAAATACATGCAATAATCACAAAATAATATTCCCATTTCTCCTCTCTTCATCACTGATTCTTCTTGTTGTTCTCCATCTTCCGCCATGGAAATGAGCTTTACCACCACTGTGTTCTTCATCTTCCTTCTGCTTACCCCTTCATTCTGTTGTTGTTCTTCTTATGAAGGTGTGTGTGTAATTTGTGTATGATGGGTGTTACAGGAATATAATGGTTGATTCATTTGTTGATTTAATTTTAATTTGTAGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGATTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCACTCCCATGGAAGGCCATGGATTGTTCATCATCGCCATCCTCTCCACCCTCCTCCATACCCACTCAAGGTCATTTTCTTTTTCTTGTTTGTGACCATCAATATCAATCTTTTGGATTATCTAGCTAGAGTAAATAGTTCGATGTCCCTGGAGTGGGTAGGGTTATCTCTACCTCTTGTTTCGTTTCTCGTTCTCGTGAAAATTTTTATTTATTTTTATGAAAATTGAGATGGAGATCCTTCCGAATTCATTGATATGAAGATCCTCCATGTGAATTCCCGACCCGACCCTATTTAGCTCATGGAAAAAAGTCTCTTTCCGCTCCCTAAGATCCTCCATGTGAATTTTCGACCCGACCCTACTTGGCTCATGGAAAAAAGTCTCTTTACGCTTACTCTCCATTCCCCCTAAGTTTAGAGCGTTTTAATTGAAATAAACATCTCTAGCTTCAAGTGGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTACATAATTTTTATTTAAATTGTTTATATGTTTTTATTTTTCTTGCGTTTTAAAAAATAGCGTAGAAGTTCGTTTACTCCCAAACATAAATAAAAGGGTTATTTTATTTCTATTTACTTCCATAATAAATATTTTTTTTAAAAAAATAAAATTTCCACATGTACGTGCAAAATTGGTACTTTTGAGAACAAAAGAGTAATAATAATAATGAAAAAAATAAAAAATATTTATTAAAAAAAATAAAAATTGAGGTTTGTTTTGTTTTGTCCCACCCACCCATTAAATATTATTGGTGGGTAAAGAATTTGTTTGTTTTTAGTGTATTGGGTAATCATTTATTTATCTATTTATTTATATTTTAGCACTTAGCTTACGAAAAACTTAACCAAACTTAGTCGTTGAATTATGCAAATCAATCATAAGCTGTAATCTTAGATTAATTTCTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAAATAAAATAAAGATAACTTTTTTTATTTTATTTTATTTTATAGTTTCGTAATTATTCTGTTTATTTGTGCAGGGAAGCAAGGTGGGTGCATAATTGAAGATTTGGAAGCATTTATTTCAACGTTTACAAATAAAATCATATTTAGAACTTCAGATATAAATTTCATCATCTTTTTGAAGTATAGTTCTGTACAGAACATGACTGCATCAATCTTTTGTGTGTATGTTTGGGGTTTGTGCATTTTTAATTATACACAACATTAGTATTA

mRNA sequence

GTTTGAATGTCCAAAAGCTGAAAAGAAATACATGCAATAATCACAAAATAATATTCCCATTTCTCCTCTCTTCATCACTGATTCTTCTTGTTGTTCTCCATCTTCCGCCATGGAAATGAGCTTTACCACCACTGTGTTCTTCATCTTCCTTCTGCTTACCCCTTCATTCTGTTGTTGTTCTTCTTATGAAGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGATTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCACTCCCATGGAAGGCCATGGATTGTTCATCATCGCCATCCTCTCCACCCTCCTCCATACCCACTCAAGGGAAGCAAGGTGGGTGCATAATTGAAGATTTGGAAGCATTTATTTCAACGTTTACAAATAAAATCATATTTAGAACTTCAGATATAAATTTCATCATCTTTTTGAAGTATAGTTCTGTACAGAACATGACTGCATCAATCTTTTGTGTGTATGTTTGGGGTTTGTGCATTTTTAATTATACACAACATTAGTATTA

Coding sequence (CDS)

ATGGAAATGAGCTTTACCACCACTGTGTTCTTCATCTTCCTTCTGCTTACCCCTTCATTCTGTTGTTGTTCTTCTTATGAAGGTGGATCTGAAAATGGTGGCATGGGTTCTTCGTCAGAGGTTTATGAAATAGATTACAGAGGACCAGAGACTCACTCCTCTCATATTTCTCCTCCCCATCACTCCCATGGAAGGCCATGGATTGTTCATCATCGCCATCCTCTCCACCCTCCTCCATACCCACTCAAGGGAAGCAAGGTGGGTGCATAA

Protein sequence

MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPHHSHGRPWIVHHRHPLHPPPYPLKGSKVGA

Homology

[Close]

BLAST of CmoCh03G012490 vs. ExPASy TrEMBL
Match: A0A6J1EDR4 (uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC111433241 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.7e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60
          MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH
Sbjct: 1  MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60

Query: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 90
          HSHGRPWIVHHRHPLHPPPYPLKGSKVGA
Sbjct: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 89

[Close]

BLAST of CmoCh03G012490 vs. ExPASy TrEMBL
Match: A0A6J1IQ06 (uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 9.9e-40
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60
          MEMSFTTTVFF+FLLLTPSFCCCSS EGGSENGG+G SS+VYEIDYRGPETHSSHISPPH
Sbjct: 1  MEMSFTTTVFFLFLLLTPSFCCCSSSEGGSENGGLG-SSQVYEIDYRGPETHSSHISPPH 60

Query: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 90
           SHGRPWIVHH HPLHPPPYPLKGSKVGA
Sbjct: 61 PSHGRPWIVHHHHPLHPPPYPLKGSKVGA 88

[Close]

BLAST of CmoCh03G012490 vs. ExPASy TrEMBL
Match: A0A6J1CPX6 (uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013652 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.3e-18
Identity = 60/89 (67.42%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 8  TVFFIFLLL-TPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPP-HHSHGR 67
          T FF+FL+L TPS    SS +GGSENG M  SSEVYEIDYRGPETHSSH SPP HHSHGR
Sbjct: 10 TFFFLFLILATPSI---SSSKGGSENGAMEISSEVYEIDYRGPETHSSHFSPPDHHSHGR 69

Query: 68 PWIVHHR---HPLHPPPYPLKGS--KVGA 90
          PWI+HH+   H L+P P   K S  KVGA
Sbjct: 70 PWIIHHQPKLHSLNPSPNSRKVSCKKVGA 95

[Close]

BLAST of CmoCh03G012490 vs. ExPASy TrEMBL
Match: A0A5A7U1B9 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00720 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.0e-12
Identity = 52/85 (61.18%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 3  MSFTTTVFFIFLLLTPSFCCCSSYEGGS---ENGGM-----GSSS----EVYEIDYRGPE 62
          ++F TT+FF+FLL TPS    +S EGGS    NGG+      SSS     VYEIDYRGPE
Sbjct: 4  VNFMTTMFFLFLLATPSM---ASSEGGSSEYNNGGIDDDDSSSSSRRYDSVYEIDYRGPE 63

Query: 63 THSS-HISPPHHSHG-RPWIVHHRH 74
          THSS HISPP HSHG RPWI+HH H
Sbjct: 64 THSSHHISPPDHSHGRRPWIIHHHH 85

[Close]

BLAST of CmoCh03G012490 vs. ExPASy TrEMBL
Match: A0A0A0KIB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.4e-11
Identity = 51/83 (61.45%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 3  MSFTTTVFFIFLL-LTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSS-HISPPH 62
          ++F TT+FF+FLL  TPS    SS    SEN   G    VYEIDYRGPETHSS HISPP 
Sbjct: 4  VNFMTTMFFLFLLAATPSL--SSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPPD 63

Query: 63 HSHG-RPWIV-HHRHPLHPPPYP 82
          HSHG RPWI+ HHRH L  P  P
Sbjct: 64 HSHGRRPWIIHHHRHQLLQPKQP 84

[Close]

BLAST of CmoCh03G012490 vs. NCBI nr
Match: XP_022925989.1 (uncharacterized protein LOC111433241 [Cucurbita moschata] >KAG7034582.1 hypothetical protein SDJN02_04312 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.7 bits (483), Expect = 5.6e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60
          MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH
Sbjct: 1  MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60

Query: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 90
          HSHGRPWIVHHRHPLHPPPYPLKGSKVGA
Sbjct: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 89

[Close]

BLAST of CmoCh03G012490 vs. NCBI nr
Match: KAG6604438.1 (hypothetical protein SDJN03_05047, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.7 bits (478), Expect = 2.1e-44
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60
          MEM FTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH
Sbjct: 1  MEMRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60

Query: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 90
          HSHGRPWIVHHRHPLHPPPYPLKGSKVGA
Sbjct: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 89

[Close]

BLAST of CmoCh03G012490 vs. NCBI nr
Match: XP_023543089.1 (uncharacterized protein LOC111803061 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173.7 bits (439), Expect = 7.1e-40
Identity = 82/89 (92.13%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60
          MEMSF  TVFF+FLLLTPS CCCSS EGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH
Sbjct: 1  MEMSFRITVFFLFLLLTPSLCCCSSNEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60

Query: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 90
           SHGRPWIVHH HPLHPPPYPLKGSKVGA
Sbjct: 61 PSHGRPWIVHHHHPLHPPPYPLKGSKVGA 89

[Close]

BLAST of CmoCh03G012490 vs. NCBI nr
Match: XP_022979166.1 (uncharacterized protein LOC111478885 [Cucurbita maxima])

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPH 60
          MEMSFTTTVFF+FLLLTPSFCCCSS EGGSENGG+G SS+VYEIDYRGPETHSSHISPPH
Sbjct: 1  MEMSFTTTVFFLFLLLTPSFCCCSSSEGGSENGGLG-SSQVYEIDYRGPETHSSHISPPH 60

Query: 61 HSHGRPWIVHHRHPLHPPPYPLKGSKVGA 90
           SHGRPWIVHH HPLHPPPYPLKGSKVGA
Sbjct: 61 PSHGRPWIVHHHHPLHPPPYPLKGSKVGA 88

[Close]

BLAST of CmoCh03G012490 vs. NCBI nr
Match: XP_038881428.1 (uncharacterized protein LOC120072958 [Benincasa hispida])

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-21
Identity = 65/101 (64.36%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1  MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGM-----GSSSEVYEIDYRGPETHSSH 60
          MEM    T+FF+FLL TPS    SS +GGSENG M      SSSEVYEIDYRGPETHSSH
Sbjct: 1  MEMISFMTMFFLFLLATPSL---SSPKGGSENGEMDFSSSSSSSEVYEIDYRGPETHSSH 60

Query: 61 ISPPHHSHGRPWIVHH--------RHPLHPPPYPLKGSKVG 89
          ISPP HSHGRPWI HH        + P  P PYPLKGSK G
Sbjct: 61 ISPPDHSHGRPWINHHDQHQLQPKQPPFKPDPYPLKGSKAG 98

[Close]

BLAST of CmoCh03G012490 vs. TAIR 10
Match: AT5G03120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 3  MSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGMGSSSEVYEIDYRGPETHSSHISPPHHS 62
          M  T  + F+ + L  +  C   +  GSE     + SEVYEIDYRGPETH+S   PP   
Sbjct: 1  MKSTVMMIFLIIYLLIAVPC---FAKGSEQ----TDSEVYEIDYRGPETHNSR-PPPETM 60

Query: 63 HGRPWIVHH 72
          HG+P  +HH
Sbjct: 61 HGKPPYIHH 61

The following BLAST results are available for this feature:

BLAST of CmoCh03G012490 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G012490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EDR4	2.7e-45	100.00	uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC1114332...	[more]
A0A6J1IQ06	9.9e-40	92.13	uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885...	[more]
A0A6J1CPX6	6.3e-18	67.42	uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5A7U1B9	3.0e-12	61.18	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0KIB6	4.4e-11	61.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1	[more]

BLAST of CmoCh03G012490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925989.1	5.6e-45	100.00	uncharacterized protein LOC111433241 [Cucurbita moschata] >KAG7034582.1 hypothet...	[more]
KAG6604438.1	2.1e-44	98.88	hypothetical protein SDJN03_05047, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023543089.1	7.1e-40	92.13	uncharacterized protein LOC111803061 [Cucurbita pepo subsp. pepo]	[more]
XP_022979166.1	2.1e-39	92.13	uncharacterized protein LOC111478885 [Cucurbita maxima]	[more]
XP_038881428.1	3.3e-21	64.36	uncharacterized protein LOC120072958 [Benincasa hispida]	[more]

BLAST of CmoCh03G012490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03120.1	1.6e-05	43.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G012490.1	CmoCh03G012490.1	mRNA