CmoCh03G010610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G010610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RNA-binding protein 39-like isoform X1
Location	Cmo_Chr03: 7900300 .. 7908420 (+)
RNA-Seq Expression	CmoCh03G010610
Synteny	CmoCh03G010610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCTGTTTTCATCCATATAAAAGCAACTCCAAGTCTTTCCCCGCGGATTATTGGAAATTCCAAGCCAAACCAATAGTTCCCCTCCCGAAACCCCTTTAAAAAACCCTAGAATTTTCAATCTATCGAAATTTCGCCCGCCTAGATTCGCTGATTCTGTTCGAATACCAACTCCGGCGAGATCTCCAGCTTTCATTTTGCGGGTCTACTATCGAACCGCTGAATTTCTGAAGATTCGATGGACTTCGACGAGTATGATTACTTGGAGAAAGCCGTGGAGGATCAGGACGATAAGGAGACGAAGAAGGCAAAGAAGAGCGAGAGTGAGAGGAACGAGAAAAGCAGCAGGAAGAGAGAGGTAGACGAGGAAGCTGGCTCTGGTGGTCGTGTGGATGAGGAGCTGAAGGTCAAGAGGTCGAAAAGCGAGCATGAAAATGGGAAGGAGGATAGGGATCACTCGGGCCGAGCGAGGGATCGGCATCGAAGAGACAGAGAGGAAGAAACAGATGGGGTTAAAGAGAGGGATAGAGAAAGGAACCGTACGAGAGATAGGGGTAGCAGTGAGAAGGAAAGGGATAGAGACAGGGATAGAGAGGAGAGAGATAGAGAGAGACATAAGGAGAAGGAGAAGGAGAAGGAGAGGGAGAGAGACAAGGATAGAAGGGATAAGGAGAGAGATAGAGAGAGGCATAAGGAGAAGGACAGAGAGAGAGACAAGGATAGAAGGGACAAGGAGAGGGAGAGGGAGAAGGAGAAAGAAAGAGAAAGGAGAGAAAGGGAGAAGAGGGAGCGGGAGAGAGAAGAGGAGAGATCGAGGCGAAGCAGGAGTCGGTCTGTTCGGGAGAAAGAACGTGAAGTTGATGTCAGAGAAAACAGGTAATTGTTCATTTGTGCGCTCTTTGTTGAACTGTGATCTTGAAAGCTTACAATTGACTGTTGGGTGTTGCTCTTATACGTTTATTTTCCGCTTGTTTCTCGTTGTTATTCTTAACAATTATGGGGCGGTGTGTTTGAACGTGAAACAATTTTTTTCGTGGAAAATGTCCAAAGGATAGAAACTTCCCATATGAGGCGAAAACAATCATCCAAGCAAATAGAATGGAGAAAATATCTGTAAAAAATTATAAGAGCCGAAAGATCTACCAAATATTTGAGCACTGAGTATAAGACCGAGCAACTTCGAGAAGAACAAGTCAAGAAGCCAGCTAGCCAAAACAACAAAAGCCACTTCCACCAATCACCAAACACTGCTCCAGGCTACAGGCTAATAGGATATCAACTGGGAAACTGCCAAAACTTAATAGAAACTCCTTTGTGAAACAAGCTATCAATTCTCTGATCAAAAGCTCTTCAAACACACCAAACTAATCACACTAATGCTTCAACCAAGCACACAACCATAAATGAATTAATCTGGAATAAGCCATACTTGATTGGTGATCTTTAGCTTTGAACTCCCAAACATCTTGAAGTCCATGAGATGATCTTCATGGCTATGGACGCCAGCCCACATTGTCAGTTGAGAAAAAGTGCTCAAGGCATAGGACGAAGTTTATGGTAGATATATTTTTGGTTACTGCTTACTAAGCTTGTCTTTAAATTTGAATCTATTGTATGAAATTGGTTTCTCATATAAATTAAAACAAAATTGTTGCATTAAACAATATGACATTTATCGAGTTAGAAACTTAGATTAGAATACATTTATGCTCTAGGTAGTGAACTGTGTAAACATTAGCGCTAATTCCCAGGCCTTTGGTTTGGCATCATTGCTAAACCAGATATTCCGTGGAAATTAGGACCTCTTTCAAGCCTGGTAATGACAGTCGGTTATTTATTTATTTTAATTTGTTGATTTGTTTGAAAAGAAAAAACACTTGCGTTTCATTGACAAGTGCAAAAGTTTTCAAGCCATTTACTGAGTTGGTATTTTGCAACAGAAAGGGTAGGACAACAGCCAATGATAACCACGACATCAAATGAAATCATAAAAGTGTAGACTTGTTCTCCAAGTTCTTTTTTATTTTTATTATTCATTCTCTTTTCTTACTGCATTCTATAGTCTAAATTACTGATATACCGCGATGAAGGTTTTATCAGGAAGTTCACATTCATTCAAAAAAGATTGTGCCTTCACATAATCACTATCCCCTAGTAATATAGAGTGGAAAGAAGAAATCTAAGTCGTTCTAAATTTCTTAAACATTATTTTAATTTAAATTACTGTGTTTTCCTTCAATTTTTCCCTGATGTTTGTGTGTGCAAATGGCAGGAGAATGAAGGAAAAGAAAGACATGGTGGAGCCTGAAGCGGATCCAGAGAGGGATCAAAGAACTGTATTTGCATATCAGGTTGATAGTTTTCCTTGTTTTTCCTTACCTTTCATGTTCTCTTTATATTTTGCTTATCATTTTTATTATCCTCTATATTCTTTGTGCAGATGCCTTTGAAGGCCACAGAGAGAGATGTTTATGAATTCTTTTCAAAAGCGGGAAAGGTATTTGAAATGTGTTACTCAAGTGAAGCACATATGTGTTTATTTTTTATTTAGCAAAAAATTAACAATTAAAGGTCTTAGCAGTCATACGTGCATCTATATTATTTCCATGAGCCATGTCCCTTGTACTTGTTCACCTCTGTAGCATGTATTAGATAGAGGAATTTTGGTTGCAATGTTATTGCTACAAATGTTATGATGGCATAGATATTGAGATAGATTTGCTTCATATTGCAGTTACTGTTCCTCTGCCTTCAGTTTCGAAACTATAATCAATTTCTTCTATCTCAACATTCTTTTATATGGGGTGAGTGAAAATGTATATGAGTTCTGTCGTGATCTCATTGATGGCTGAATGATGCTTTGCTTCGAGTGTAAAGAACGGAAACCTTTATTGCTTTTCTTTTTGCCGGCTTCCTAAATAACCTTCTGTCATTGTTTTTTCTATTTCAGGTGAGAGATGTCCGGCTGATCATGGACAGGAATTCTAGACGGTCAAAAGGAGTTGGGTATGTGGTCTTGGGATGAACAAGTTTTATATTGTATGCTTGTGATCTCGTTAATATGGTTATTAATATAGTAGTTTTGAAGTATCAAATTTAACTGTATTTTTAAATGAACTAGCAATGCGATAATGATGAGGGATGGTGGGAATACTATGCAGTCATGTTTAATCAATTCATGCTGCTTGTTCAAGGTAGATAACATAAACCTGAGGTTTCCTTTGTTGTTTTCCCCATCGTACTCCTAATTCTGCTCCTCTATGTTTTTGTGCAGATAAGAAACAGTCCTAACTCCTATGACTCTGTTATCTCTGGTCTTGGTTTTAGATTCATTTCTTTCTACTATGTAATTTCTTGGTTCAAGTTAACTTTCAAACAGTGATTTGTTACACTTTATTAAAATTAACACGTTTTGTCGTGTATCATCTACTCTCATTGTTTTTTTTCCTTGGTAAGTATGCAGAAAGGCTCTGGCTTGCGGTTGTTTTTTTTTTTTTGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTCTTTGATTAAAAAAAAAAAAAATTTAGAGAAGGTCTTCTATGGCATCTTTCCCATAGTACTTACTGTGCAATGAATTTTTATTGAGAGGACTGTCCATCGGTTATCAATAATGATTTTTTTGGGGATTAATTTGTATATGCTAATTGACAAAATTAGGAATGGCGACAAATAGTCACCATAGGACCCCCCATCTAGTTTAAGCTGGTCATCTGCTATTTGGTTTTGTGTTGCCTCTTCATTGATGAACTGACTTAACTATTTAATTAGTCCTAGAAAGTCTGAGGTCTCTGTGTAGTTTATTTATCTTATGCTTTGTAAACTTTGTTTCTTATTTTTGCTGTCTCATGTTCTAATAATTTTACTTTGAGGTATTGATTAAACTGCAGGTATGTTGAATTTTATGATGCGATGTCTGTGCCCATGGCTATTGCTCTCTCTGGTCAACTACTTTTTGGGCAACCTGTTATGGTTAAACCTTCAGAGGCTGAAAAGAATCTTGTTCAATCAAATACGTCTGGGGCCTCTGGTGCAGGTCCATATGGAGCAGTAGACAGGAAACTATATGTTGGTAATCTACATTTTAACATGACTGAGACTCACCTTCGAGAGGTACTTAGACCAATAAATCTATGAAATTTTATCTCAAGACATTCATATTTGATTTCCTCTCATACGCAGTTATTTTTTCTACAAGTGACAAGTGTAGACTGACATTGAACAAGAAACAAATTTATGCATCAAAATCATTTCTGATAGTATATGCAGTGAACATGGTTTCCCTATTGTAAAATCATAGTCTATGAATTATAGGCTCTGGCAGAGAATTTAGATTCGGTTTCTACGGATTTAAAATAATCATAGCATATAACCTTTGGACTATAATAGTTGTCCTCCTTCTCTCAGATATATTTCAAAGGAAATTACAACCTATCTTGCCAATGACTAGTTTGAGAGAGTCATCCCTCTCCACAATACTGTCAGTTAACACACAAAATACCCATGTACCCTTGTTTGAGAGGGTCATCCATTTCTCCACACTAACTGACCTAGGGAGTTATTACTTACCTATTCAGAATATTCAAACAAGGAAACTGGCTATAACCGATTCTTCTTAATGTTAGAAACAGGAAACAGATACATTTCAGTTTTTCCCTTGAATAAACCTTCTGGAATGGAGGTCTAACAGAGCATCACTTCTTTTCTGACTAGATTTTTGAAGCTTTTGGTCCCGTGGAGCTTGTGCAACTACCTCTCGACCTTGAATCGGGTCACTGCAAGGGTTTTGGATTTGTTCAAGTGGGTAATCATTTGTTATCAATTTTTGCGAGTTTCTGATGTACTCAGTCCATAGCTCATAAAGGTATGTCTTAATTTTTTAACTTGTTTCCAGTTTGCTCATCTAGAGCATGCGAAGGCAGCTCAAAGCTTGAATGGGAAATTAGAAATTGCAGGCCGAACCATTAAGGTAGTTTGCTGCTAGAACCTATCAGATTTAAACTTGTGTTTAATACTAATATATCTGTTTGTTATTCGGGCTTCTCTGAAGAATGATGACATCCTGGGTTCTGTGTGTTTTAAATAATACTGTTTGTGCAGGTTTCATCTGTAACAGATCACATTGGAGCACAAGAGAACGTTGCAAAATCAAATGACCTTGATGATGATGAAGGGGGCGGTCTGGTTGGTGTTTAGTTTCTTTTATGACACCTTGCTTCAGATTTTTCTATTCCCCTCACATGCATAAAAGAAAAAAGGAGAACAAAAAAAAAAAAAAAAAAATGAAGATGAGACTATTATCATCAGATTATGATCATGTGTCATATCATTTATTTGATGACCGTTGAACTGTGCTGATTGGATACTTTTTCACATTGATTACTTCCAACTAGAGCACTTTTTGGTTACTAATTATAACGACTGATTGCAGGCATTGAATGCTCAATCAAGAGCTCTGCTTATGCAGAAGCTTGACCGCACTGGCATTGCTACCAGGTTTGTCTCCTTTTAGTGTGATTAAGAAGCGAGATGTCTTATTTTCCCTCTTTAGTAGTTAGTACTTCCATATTCTTGAATGGACGTATTTTTATTCTCTAAGAAAGAAAGATTGGATCAATGCAAGTCAACTGCTTCATGGTTATTGCTTCATGGTTTCAGTATTGCAGGATCTCTTGGAGCTCCAGTGTTGAATGCGTCAGCCCCAAATCAGAGAGCTACCAGCTTGCCACTAAATGGTCAAGCTGCAGTTGCTGCACCAGTACTTCCTGCGAATTTTACTCCACCTGTTTTACAATCTGTTGGAAGTCCTAGTGAATGCCTACTACTGAAAAACATGTTTGATCCATCGACGGAGGTACTGAATAATTGAATGTTCTGTTTCTCATTTTCTGAGGTGGATTATTTATGATACGAATCATCTTGCAGACAGCACCAGACTTTGACTTGGAAATCAAAGAAGATGTTGAAGAGGAGTGTTCTAAATATGGTCATGTTAAGCATATATATGTGGATAAGTGAGTCTTTTTTTCTTGTCCCCATAATCATATTAATTACTTCAGCTCATATGAAACTTCATCTATTCATTTTTTATTCAAATTTATATTTCTGCTTTCTTTTTTAATCGGTCATATTTATTGCTACAATGCTAAAATACAGGATGTGTCCCCTGTTCATATCTTTCTTGAATTTGTTTTGTGCCGTGTTGGGGCATTAACTTGGATCTTTGATCCTCATTTGCAGATACTTCCGGATTAGGGATGGAAAAAAATTACTAATGCCTCCATGGATGGGAGAATCTTATTTTCCTTATTTAATTTTAGGAAGGCTATGGAAATGGCTATCCTACGCTAGCCCTGAATTATTATAAACTTAAAAATATACTTGACTGACAACATTTTCTATTATATATATATATACACACACTGGAAACTTAGTCTTCAACAGAATGTCATTTCATCGTTATGTCCTAGAATTGAACTTTCGAACATTGCGTTATTATGTGATTAAATAGATGTTTGTTTGTGTAGAATGTCATTTCATCGTTTTATTTTTCTTTTATGATTTTATATTTTGCAGAAATAGCGCGGGATGTGTGTATCTGCAATATGATACGGTGGAAGCTGCTATTAATGCTCAACGTGCAATGCACTTGAGATGGTTTGCAGGCAGGCAGATATCAGTATTGTTCATGGTTTGTTTTTAACTCAAAAGCTTCAATTAGCTCGTAATAAATTTCTCAATTCTTATAGACTGGTATTAGGAAGAAGAAATTGTGTCGGGGAGCTTGATTTTTAGGGCTTTTGGAACTCATTTCCTTTGTGTTAGATTTCTCTGTTTCAGCTTCTTCTCAATATCATATCTTCTGTGATGCAGCAACCGCAGGTTTATGAAGCCAAGTTTATAGGAGCTTGAATGCCGTTCGTGGTTCTCATCATTTAGGAGTAACCAGAAGATCCCTCCAGCCGTCCAGTCAATCTCTAATTCCTCCCCCGTTTCTGTAATAGGTGCATGTAGAAGTACAGGTTAAAATTGAGTTGACTTTCTGGATAGAAACGTAAAACGCCCTGTTCCTTATGCTGGAAATTGGTACCTATTCTTCATTTCTACTCTTCTATAACATGAGTGTCAAGCGAATACTTTTTGTTGGCTTGGATGGATGCCTTAGTGCCGACTTGTGGAGCTGCTGCTTTCTTTGAACATGCCTTGCAATGCATGCATTTTGTTGAAAGTCTTCTCTGAAACACACATAGTTTGAGTTGGATTTTCGTGCAATATTACAGATTCATATCTGCCAGCGATTACTTGAAGCCCTTAATTTATACAAATTTTTCCCAATGTTCATAACTCTTGCCCTTCAGGACTGAATGCAAGTTTATAGCTGTTTTTTAGTAGAAATTGTCGACATTTTTATGATTTCCATATTGTAGGATAACTTAAAGAAGGGTGTTTTCAATATAATGCTCGGACAGTGA

mRNA sequence

GATCTGTTTTCATCCATATAAAAGCAACTCCAAGTCTTTCCCCGCGGATTATTGGAAATTCCAAGCCAAACCAATAGTTCCCCTCCCGAAACCCCTTTAAAAAACCCTAGAATTTTCAATCTATCGAAATTTCGCCCGCCTAGATTCGCTGATTCTGTTCGAATACCAACTCCGGCGAGATCTCCAGCTTTCATTTTGCGGGTCTACTATCGAACCGCTGAATTTCTGAAGATTCGATGGACTTCGACGAGTATGATTACTTGGAGAAAGCCGTGGAGGATCAGGACGATAAGGAGACGAAGAAGGCAAAGAAGAGCGAGAGTGAGAGGAACGAGAAAAGCAGCAGGAAGAGAGAGGTAGACGAGGAAGCTGGCTCTGGTGGTCGTGTGGATGAGGAGCTGAAGGTCAAGAGGTCGAAAAGCGAGCATGAAAATGGGAAGGAGGATAGGGATCACTCGGGCCGAGCGAGGGATCGGCATCGAAGAGACAGAGAGGAAGAAACAGATGGGGTTAAAGAGAGGGATAGAGAAAGGAACCGTACGAGAGATAGGGGTAGCAGTGAGAAGGAAAGGGATAGAGACAGGGATAGAGAGGAGAGAGATAGAGAGAGACATAAGGAGAAGGAGAAGGAGAAGGAGAGGGAGAGAGACAAGGATAGAAGGGATAAGGAGAGAGATAGAGAGAGGCATAAGGAGAAGGACAGAGAGAGAGACAAGGATAGAAGGGACAAGGAGAGGGAGAGGGAGAAGGAGAAAGAAAGAGAAAGGAGAGAAAGGGAGAAGAGGGAGCGGGAGAGAGAAGAGGAGAGATCGAGGCGAAGCAGGAGTCGGTCTGTTCGGGAGAAAGAACGTGAAGTTGATGTCAGAGAAAACAGGAGAATGAAGGAAAAGAAAGACATGGTGGAGCCTGAAGCGGATCCAGAGAGGGATCAAAGAACTGTATTTGCATATCAGATGCCTTTGAAGGCCACAGAGAGAGATGTTTATGAATTCTTTTCAAAAGCGGGAAAGGTGAGAGATGTCCGGCTGATCATGGACAGGAATTCTAGACGGTCAAAAGGAGTTGGGTATGTTGAATTTTATGATGCGATGTCTGTGCCCATGGCTATTGCTCTCTCTGGTCAACTACTTTTTGGGCAACCTGTTATGGTTAAACCTTCAGAGGCTGAAAAGAATCTTGTTCAATCAAATACGTCTGGGGCCTCTGGTGCAGGTCCATATGGAGCAGTAGACAGGAAACTATATGTTGGTAATCTACATTTTAACATGACTGAGACTCACCTTCGAGAGTTTGCTCATCTAGAGCATGCGAAGGCAGCTCAAAGCTTGAATGGGAAATTAGAAATTGCAGGCCGAACCATTAAGGTTTCATCTGTAACAGATCACATTGGAGCACAAGAGAACGTTGCAAAATCAAATGACCTTGATGATGATGAAGGGGGCGGTCTGGCATTGAATGCTCAATCAAGAGCTCTGCTTATGCAGAAGCTTGACCGCACTGGCATTGCTACCAGTATTGCAGGATCTCTTGGAGCTCCAGTGTTGAATGCGTCAGCCCCAAATCAGAGAGCTACCAGCTTGCCACTAAATGGTCAAGCTGCAGTTGCTGCACCAACAGCACCAGACTTTGACTTGGAAATCAAAGAAGATGTTGAAGAGGAGTGTTCTAAATATGGTCATGTTAAGCATATATATGTGGATAAAAATAGCGCGGGATGTGTGTATCTGCAATATGATACGGTGGAAGCTGCTATTAATGCTCAACGTGCAATGCACTTGAGATGGTTTGCAGGCAGGCAGATATCAGTATTGTTCATGCTTCTTCTCAATATCATATCTTCTGTGATGCAGCAACCGCAGGATAACTTAAAGAAGGGTGTTTTCAATATAATGCTCGGACAGTGA

Coding sequence (CDS)

ATGGACTTCGACGAGTATGATTACTTGGAGAAAGCCGTGGAGGATCAGGACGATAAGGAGACGAAGAAGGCAAAGAAGAGCGAGAGTGAGAGGAACGAGAAAAGCAGCAGGAAGAGAGAGGTAGACGAGGAAGCTGGCTCTGGTGGTCGTGTGGATGAGGAGCTGAAGGTCAAGAGGTCGAAAAGCGAGCATGAAAATGGGAAGGAGGATAGGGATCACTCGGGCCGAGCGAGGGATCGGCATCGAAGAGACAGAGAGGAAGAAACAGATGGGGTTAAAGAGAGGGATAGAGAAAGGAACCGTACGAGAGATAGGGGTAGCAGTGAGAAGGAAAGGGATAGAGACAGGGATAGAGAGGAGAGAGATAGAGAGAGACATAAGGAGAAGGAGAAGGAGAAGGAGAGGGAGAGAGACAAGGATAGAAGGGATAAGGAGAGAGATAGAGAGAGGCATAAGGAGAAGGACAGAGAGAGAGACAAGGATAGAAGGGACAAGGAGAGGGAGAGGGAGAAGGAGAAAGAAAGAGAAAGGAGAGAAAGGGAGAAGAGGGAGCGGGAGAGAGAAGAGGAGAGATCGAGGCGAAGCAGGAGTCGGTCTGTTCGGGAGAAAGAACGTGAAGTTGATGTCAGAGAAAACAGGAGAATGAAGGAAAAGAAAGACATGGTGGAGCCTGAAGCGGATCCAGAGAGGGATCAAAGAACTGTATTTGCATATCAGATGCCTTTGAAGGCCACAGAGAGAGATGTTTATGAATTCTTTTCAAAAGCGGGAAAGGTGAGAGATGTCCGGCTGATCATGGACAGGAATTCTAGACGGTCAAAAGGAGTTGGGTATGTTGAATTTTATGATGCGATGTCTGTGCCCATGGCTATTGCTCTCTCTGGTCAACTACTTTTTGGGCAACCTGTTATGGTTAAACCTTCAGAGGCTGAAAAGAATCTTGTTCAATCAAATACGTCTGGGGCCTCTGGTGCAGGTCCATATGGAGCAGTAGACAGGAAACTATATGTTGGTAATCTACATTTTAACATGACTGAGACTCACCTTCGAGAGTTTGCTCATCTAGAGCATGCGAAGGCAGCTCAAAGCTTGAATGGGAAATTAGAAATTGCAGGCCGAACCATTAAGGTTTCATCTGTAACAGATCACATTGGAGCACAAGAGAACGTTGCAAAATCAAATGACCTTGATGATGATGAAGGGGGCGGTCTGGCATTGAATGCTCAATCAAGAGCTCTGCTTATGCAGAAGCTTGACCGCACTGGCATTGCTACCAGTATTGCAGGATCTCTTGGAGCTCCAGTGTTGAATGCGTCAGCCCCAAATCAGAGAGCTACCAGCTTGCCACTAAATGGTCAAGCTGCAGTTGCTGCACCAACAGCACCAGACTTTGACTTGGAAATCAAAGAAGATGTTGAAGAGGAGTGTTCTAAATATGGTCATGTTAAGCATATATATGTGGATAAAAATAGCGCGGGATGTGTGTATCTGCAATATGATACGGTGGAAGCTGCTATTAATGCTCAACGTGCAATGCACTTGAGATGGTTTGCAGGCAGGCAGATATCAGTATTGTTCATGCTTCTTCTCAATATCATATCTTCTGTGATGCAGCAACCGCAGGATAACTTAAAGAAGGGTGTTTTCAATATAATGCTCGGACAGTGA

Protein sequence

MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRSKSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREERDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERREREKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAPTAPDFDLEIKEDVEEECSKYGHVKHIYVDKNSAGCVYLQYDTVEAAINAQRAMHLRWFAGRQISVLFMLLLNIISSVMQQPQDNLKKGVFNIMLGQ

Homology

[Close]

BLAST of CmoCh03G010610 vs. ExPASy Swiss-Prot
Match: Q5RC80 (RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 5.6e-37
Identity = 182/492 (36.99%), Postives = 245/492 (49.80%), Query Frame = 0


Query: 119 EERDRERHKEKEKEKERERDKDR---RDKERDRERHKEKDRERDKDRRDKEREREKEKER 178
           EER ++R K K + +  ER + +   R + RDRER K K RER K  R KER R + + R
Sbjct: 29  EERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRER-KRSRSKERRRSRSRSR 88

Query: 179 ERREREKREREREEER------------------SRRSRSRSVREKEREVDVRENRRMKE 238
           +RR R +        +                   RRSRS+S   K++         ++E
Sbjct: 89  DRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKS-------PVRE 148

Query: 239 KKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 298
             D + PE   ERD RTVF  Q+  +   RD+ EFFS  GKVRDVR+I DRNSRRSKG+ 
Sbjct: 149 PIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIA 208

Query: 299 YVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKN--LVQSNTSGASGAGPYGAVDRKL 358
           YVEF D  SVP+AI L+GQ + G P++V+ S+AEKN     +N      AGP      +L
Sbjct: 209 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGP-----MRL 268

Query: 359 YVGNLHFNMTETHLR----EFAHLEH--------------------------AKAAQSLN 418
           YVG+LHFN+TE  LR     F  +E                            KA + LN
Sbjct: 269 YVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN 328

Query: 419 GKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDDEGGGLALNAQSRALLMQKL-DRTGI- 478
           G  E+AGR +KV  VT+   A  + +   D D+ E  G+ L    R  LM +L + TG+ 
Sbjct: 329 G-FELAGRPMKVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQ 388

Query: 479 -------ATSIAGSLG-APVLNASAPNQRATSLPLNGQAAVAAPTAPD------------ 530
                  A  ++GSL    V +      + T       AA   P A              
Sbjct: 389 IPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQT 448

[Close]

BLAST of CmoCh03G010610 vs. ExPASy Swiss-Prot
Match: Q14498 (RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2)

HSP 1 Score: 155.2 bits (391), Expect = 2.1e-36
Identity = 182/498 (36.55%), Postives = 247/498 (49.60%), Query Frame = 0


Query: 119 EERDRERHKEKEKEKERERDKDR---RDKERDRERHKEKDRERDKDRRDKEREREKEKER 178
           EER ++R K K + +  ER + +   R + RDRER K K RER K  R KER R + + R
Sbjct: 29  EERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRER-KRSRSKERRRSRSRSR 88

Query: 179 ERREREKREREREEER------------------SRRSRSRSVREKEREVDVRENRRMKE 238
           +RR R +        +                   RRSRS+S   K++         ++E
Sbjct: 89  DRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKS-------PVRE 148

Query: 239 KKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG 298
             D + PE   ERD RTVF  Q+  +   RD+ EFFS  GKVRDVR+I DRNSRRSKG+ 
Sbjct: 149 PIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIA 208

Query: 299 YVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKN--LVQSNTSGASGAGPYGAVDRKL 358
           YVEF D  SVP+AI L+GQ + G P++V+ S+AEKN     +N      AGP      +L
Sbjct: 209 YVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGP-----MRL 268

Query: 359 YVGNLHFNMTETHLR----EFAHLEH--------------------------AKAAQSLN 418
           YVG+LHFN+TE  LR     F  +E                            KA + LN
Sbjct: 269 YVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN 328

Query: 419 GKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDDEGGGLALNAQSRALLMQKL-DRTGI- 478
           G  E+AGR +KV  VT+   A  + +   D D+ E  G+ L    R  LM +L + TG+ 
Sbjct: 329 G-FELAGRPMKVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQ 388

Query: 479 -------ATSIAGSLG-------APVLNASAPNQRATSLPLNGQAAVAAPTAPD------ 530
                  A  ++GSL        + V++      + T       AA   P A        
Sbjct: 389 IPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSN 448

[Close]

BLAST of CmoCh03G010610 vs. ExPASy Swiss-Prot
Match: Q8VH51 (RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2)

HSP 1 Score: 148.3 bits (373), Expect = 2.6e-34
Identity = 183/508 (36.02%), Postives = 250/508 (49.21%), Query Frame = 0


Query: 109 EKERDRDRDREERDRERHKEKEKEKERERDKDR---RDKERDRERHKEKDRERDKDRRDK 168
           E + +     EER ++R K K + +  ER + +   R + RDRER K K RER K  R K
Sbjct: 19  ENKLNSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRER-KRSRSK 78

Query: 169 EREREKEKERERREREKREREREEER------------------SRRSRSRSVREKEREV 228
           ER R + + R+RR R +        +                   RRSRS+S   K++  
Sbjct: 79  ERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKS- 138

Query: 229 DVRENRRMKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMD 288
                  ++E  D + PE   ERD RTVF  Q+  +   RD+ EFFS  GKVRDVR+I D
Sbjct: 139 ------PVREPIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISD 198

Query: 289 RNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKN--LVQSNTSGASGA 348
           RNSRRSKG+ YVEF D  SVP+AI L+GQ + G P++V+ S+AEKN     +N      A
Sbjct: 199 RNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSA 258

Query: 349 GPYGAVDRKLYVGNLHFNMTETHLR----EFAHLEH------------------------ 408
           GP      +LYVG+LHFN+TE  LR     F  +E                         
Sbjct: 259 GP-----MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE 318

Query: 409 --AKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDDEGGGLALNAQSRALLM 468
              KA + LNG  E+AGR +KV  VT+   A  + +   D D+ E  G+ L    R  LM
Sbjct: 319 CAKKALEQLNG-FELAGRPMKVGHVTERTDA-SSASSFLDSDELERTGIDLGTTGRLQLM 378

Query: 469 QKL-DRTGI--------ATSIAGSLG-------APVLNASAPNQRATSLPLNGQAAVAAP 528
            +L + TG+        A  ++GSL        + V++      + T       AA   P
Sbjct: 379 ARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQP 438

Query: 529 TAPD-----------------FDLEIKEDVEEECSKYGHVKHIYVDKNSA-GCVYLQYDT 530
            A                   +D EIK+DV EEC+K+G V HIYVDKNSA G VY++  +
Sbjct: 439 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS 498

[Close]

BLAST of CmoCh03G010610 vs. ExPASy Swiss-Prot
Match: O13845 (RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rsd1 PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 1.7e-22
Identity = 132/442 (29.86%), Postives = 204/442 (46.15%), Query Frame = 0


Query: 144 KERDRERHKEKDRERDKDRRDKEREREKEKERERREREKREREREEERSRRSRSRSVREK 203
           + RDR+R     R R    R + R  +  +      R  R R R EERS  SRS    + 
Sbjct: 147 RSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYEERS--SRSSRAHDY 206

Query: 204 EREVDVRENRRMKEKK-------DMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKA 263
           + E D+R++ R  E+K       +     ++ ERD+RTVF  Q+  + T R++Y+FF +A
Sbjct: 207 DYE-DLRDDDRSHERKRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQA 266

Query: 264 GKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQ 323
           G VRD +++ D+ S RSKGV YVEF    SV  AIALSG+ L G PV+V+ +EAEKN   
Sbjct: 267 GPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKA 326

Query: 324 SNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLR---------EFAHLEH---------- 383
              +  + A        +L V N+HFN+T+  ++         EF HL+           
Sbjct: 327 REAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFG 386

Query: 384 ----------AKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDD-------- 443
                       A + +NG  ++AGR ++V    D    +   +     D+         
Sbjct: 387 YIQYRNPISARNALEKMNG-FDLAGRNMRVCLGNDKFTTETTSSMLKRFDETLARQERSQ 446

Query: 444 ----EGGGLALNAQ--------------SRALLMQKLDRTGIATSIAGSLGAPVLNASAP 503
                GG     +Q              SR +   +L +  +A S   S  + +++   P
Sbjct: 447 PSQRNGGSSTYESQDYREAAPLSPTEEESRPITRDELMKK-LARSEDISDNSKLVSEPEP 506

Query: 504 NQRATSLPLNGQAAVAAPTAPDFDLEIKEDVEEEC-SKYGHVKHIYVDKNSAGCVYLQYD 523
             R+    L      A  T+P++  E+++DV+EEC  KYG V HI V  N  G ++++++
Sbjct: 507 PIRSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFE 566

[Close]

BLAST of CmoCh03G010610 vs. ExPASy Swiss-Prot
Match: Q86U06 (Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.0e-11
Identity = 135/419 (32.22%), Postives = 198/419 (47.26%), Query Frame = 0


Query: 81  HRRDREEETDGVKERDRERNRTRDRGSSEKERD-----RDRDREERDRERHKEKEKEKER 140
           ++++ +E+     ++D   N T    +S  E        +  +++R R  +K +++++ R
Sbjct: 18  YKKEEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSKKKRSRSHNKSRDRKRSR 77

Query: 141 ERDKDRRDKERDRER---HKEKDRERDKDRRDKEREREKEKERERREREKREREREEERS 200
            RD+DR  +   R R    + + R R  DRR     R ++  RE R   +        R 
Sbjct: 78  SRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGYRY 137

Query: 201 RRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEF 260
             S+S   REK           ++E  D + PE   ERD RTVF  Q+  +   RD+ +F
Sbjct: 138 GHSKSPHFREKS---------PVREPVDNLSPE---ERDARTVFCMQLAARIRPRDLEDF 197

Query: 261 FSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEK 320
           FS  GKVRDVR+I DRNSRRSKG+ YVEF +  SVP+AI L+GQ L G P++V+ S+AEK
Sbjct: 198 FSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK 257

Query: 321 N--LVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLR-------------------- 380
           N     +N       GP      +LYVG+LHFN+TE  LR                    
Sbjct: 258 NRLAAMANNLQKGNGGP-----MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT 317

Query: 381 ---------EFAHLEHA-KAAQSLNGKLEIAGRTIKVSSVTDHI-GAQENVAKSNDLDDD 440
                     F+  E A +A + LNG  E+AGR ++V  VT+ + G  +      D + D
Sbjct: 318 GRSKGYGFITFSDSECARRALEQLNG-FELAGRPMRVGHVTERLDGGTDITFPDGDQELD 377

Query: 441 EGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAA 459
            G     +A  R  LM KL     A      L +    A+A   +A +L LNG   + A
Sbjct: 378 LG-----SAGGRFQLMAKL-----AEGAGIQLPSTAAAAAAAAAQAAALQLNGAVPLGA 408

[Close]

BLAST of CmoCh03G010610 vs. ExPASy TrEMBL
Match: A0A6J1GD19 (RNA-binding protein 39-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453086 PE=4 SV=1)

HSP 1 Score: 880.2 bits (2273), Expect = 4.6e-252
Identity = 527/588 (89.63%), Postives = 527/588 (89.63%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60
           MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS
Sbjct: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60

Query: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120
           KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE
Sbjct: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120

Query: 121 RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180
           RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER
Sbjct: 121 RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180

Query: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240
           EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM
Sbjct: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240

Query: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300
           PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG
Sbjct: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300

Query: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE--------- 360
           QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE         
Sbjct: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVE 360

Query: 361 --------------------FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420
                               FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA
Sbjct: 361 LVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420

Query: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN 480
           KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN
Sbjct: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN 480

Query: 481 GQAAVAAP--------------------------------TAPDFDLEIKEDVEEECSKY 528
           GQAAVAAP                                TAPDFDLEIKEDVEEECSKY
Sbjct: 481 GQAAVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKY 540

[Close]

BLAST of CmoCh03G010610 vs. ExPASy TrEMBL
Match: A0A6J1ISX3 (RNA-binding protein 39-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478129 PE=4 SV=1)

HSP 1 Score: 858.2 bits (2216), Expect = 1.9e-245
Identity = 517/588 (87.93%), Postives = 518/588 (88.10%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60
           MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS
Sbjct: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60

Query: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120
           KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDRE 
Sbjct: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDRE- 120

Query: 121 RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180
                 + KEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER
Sbjct: 121 ------RHKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180

Query: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240
           EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM
Sbjct: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240

Query: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300
           PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG
Sbjct: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300

Query: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE--------- 360
           QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE         
Sbjct: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVE 360

Query: 361 --------------------FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420
                               FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA
Sbjct: 361 LVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420

Query: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN 480
           KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLP N
Sbjct: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPQN 480

Query: 481 GQAAVAAP--------------------------------TAPDFDLEIKEDVEEECSKY 528
           GQAAVAAP                                TAPDFDLEIKEDVEEECSKY
Sbjct: 481 GQAAVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSMETAPDFDLEIKEDVEEECSKY 540

[Close]

BLAST of CmoCh03G010610 vs. ExPASy TrEMBL
Match: A0A6J1ILK9 (RNA-binding protein 39-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111478129 PE=4 SV=1)

HSP 1 Score: 833.9 bits (2153), Expect = 3.8e-238
Identity = 501/588 (85.20%), Postives = 501/588 (85.20%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60
           MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS
Sbjct: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60

Query: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120
           KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDRE 
Sbjct: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDRE- 120

Query: 121 RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180
                                   ERDRERHKEKDRERDKDRRDKEREREKEKERERRER
Sbjct: 121 ------------------------ERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180

Query: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240
           EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM
Sbjct: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240

Query: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300
           PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG
Sbjct: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300

Query: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE--------- 360
           QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE         
Sbjct: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVE 360

Query: 361 --------------------FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420
                               FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA
Sbjct: 361 LVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420

Query: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN 480
           KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLP N
Sbjct: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPQN 480

Query: 481 GQAAVAAP--------------------------------TAPDFDLEIKEDVEEECSKY 528
           GQAAVAAP                                TAPDFDLEIKEDVEEECSKY
Sbjct: 481 GQAAVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSMETAPDFDLEIKEDVEEECSKY 540

[Close]

BLAST of CmoCh03G010610 vs. ExPASy TrEMBL
Match: A0A1S3B2E3 (RNA-binding protein 39 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 SV=1)

HSP 1 Score: 828.9 bits (2140), Expect = 1.2e-236
Identity = 498/590 (84.41%), Postives = 516/590 (87.46%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60
           MDFDEYDYLEKAVE+QDD+ETKK K+SESERNEKS+RKREVDEEAGSGGR DEE+KVKRS
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120
           +SEHENGKEDRDHSGRARDRHRRDREEETDG KERD+ERNRTR+RGSSEKERDRDRDREE
Sbjct: 61  RSEHENGKEDRDHSGRARDRHRRDREEETDGGKERDKERNRTRERGSSEKERDRDRDREE 120

Query: 121 RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRD--KEREREKEKERERR 180
           RDR+RH    KEKERERDKDR+DKERDRERHKEKDRERDKDRRD  KEREREKEKERERR
Sbjct: 121 RDRDRH----KEKERERDKDRKDKERDRERHKEKDRERDKDRRDKEKEREREKEKERERR 180

Query: 181 EREKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY 240
           +RE+REREREEERSRRSRSRSVRE+EREVDVRE+RRMKEKKD  EPEADPERDQRTVFAY
Sbjct: 181 DRERREREREEERSRRSRSRSVREREREVDVRESRRMKEKKDTAEPEADPERDQRTVFAY 240

Query: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL 300
           QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL
Sbjct: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL 300

Query: 301 FGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE------- 360
            GQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE       
Sbjct: 301 LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP 360

Query: 361 ----------------------FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQEN 420
                                 FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQE+
Sbjct: 361 VELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQES 420

Query: 421 VAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLP 480
           VAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLN SAPNQR+TSLP
Sbjct: 421 VAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTSLP 480

Query: 481 LNGQAAVAAP--------------------------------TAPDFDLEIKEDVEEECS 528
           LNGQAAVAAP                                TAPDFD+EIKEDVEEECS
Sbjct: 481 LNGQAAVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEECS 540

[Close]

BLAST of CmoCh03G010610 vs. ExPASy TrEMBL
Match: A0A1S3B1Y4 (RNA-binding protein 39 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 SV=1)

HSP 1 Score: 823.9 bits (2127), Expect = 3.9e-235
Identity = 498/592 (84.12%), Postives = 516/592 (87.16%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60
           MDFDEYDYLEKAVE+QDD+ETKK K+SESERNEKS+RKREVDEEAGSGGR DEE+KVKRS
Sbjct: 1   MDFDEYDYLEKAVEEQDDRETKKPKRSESERNEKSTRKREVDEEAGSGGREDEEVKVKRS 60

Query: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120
           +SEHENGKEDRDHSGRARDRHRRDREEETDG KERD+ERNRTR+RGSSEKERDRDRDREE
Sbjct: 61  RSEHENGKEDRDHSGRARDRHRRDREEETDGGKERDKERNRTRERGSSEKERDRDRDREE 120

Query: 121 RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRD--KEREREKEKERERR 180
           RDR+RH    KEKERERDKDR+DKERDRERHKEKDRERDKDRRD  KEREREKEKERERR
Sbjct: 121 RDRDRH----KEKERERDKDRKDKERDRERHKEKDRERDKDRRDKEKEREREKEKERERR 180

Query: 181 EREKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAY 240
           +RE+REREREEERSRRSRSRSVRE+EREVDVRE+RRMKEKKD  EPEADPERDQRTVFAY
Sbjct: 181 DRERREREREEERSRRSRSRSVREREREVDVRESRRMKEKKDTAEPEADPERDQRTVFAY 240

Query: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL 300
           QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL
Sbjct: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL 300

Query: 301 FGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE------- 360
            GQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE       
Sbjct: 301 LGQPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGP 360

Query: 361 ----------------------FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQEN 420
                                 FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQE+
Sbjct: 361 VELVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQES 420

Query: 421 VAKSNDLDDDEGGGL--ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATS 480
           VAKSNDLDDDEGGGL  ALNAQSRALLMQKLDRTGIATSIAGSLGAPVLN SAPNQR+TS
Sbjct: 421 VAKSNDLDDDEGGGLVGALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNGSAPNQRSTS 480

Query: 481 LPLNGQAAVAAP--------------------------------TAPDFDLEIKEDVEEE 528
           LPLNGQAAVAAP                                TAPDFD+EIKEDVEEE
Sbjct: 481 LPLNGQAAVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDMEIKEDVEEE 540

[Close]

BLAST of CmoCh03G010610 vs. NCBI nr
Match: XP_022949796.1 (RNA-binding protein 39-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 880.2 bits (2273), Expect = 9.5e-252
Identity = 527/588 (89.63%), Postives = 527/588 (89.63%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60
           MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS
Sbjct: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60

Query: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120
           KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE
Sbjct: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120

Query: 121 RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180
           RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER
Sbjct: 121 RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180

Query: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240
           EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM
Sbjct: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240

Query: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300
           PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG
Sbjct: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300

Query: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE--------- 360
           QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE         
Sbjct: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVE 360

Query: 361 --------------------FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420
                               FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA
Sbjct: 361 LVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420

Query: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN 480
           KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN
Sbjct: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN 480

Query: 481 GQAAVAAP--------------------------------TAPDFDLEIKEDVEEECSKY 528
           GQAAVAAP                                TAPDFDLEIKEDVEEECSKY
Sbjct: 481 GQAAVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKY 540

[Close]

BLAST of CmoCh03G010610 vs. NCBI nr
Match: XP_023543913.1 (RNA-binding protein 39-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 869.8 bits (2246), Expect = 1.3e-248
Identity = 522/588 (88.78%), Postives = 525/588 (89.29%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60
           MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS
Sbjct: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60

Query: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120
           KSEH+NGK+DRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGS+EKERDRDRDREE
Sbjct: 61  KSEHDNGKDDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSTEKERDRDRDREE 120

Query: 121 RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180
           RDRERH  KEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER
Sbjct: 121 RDRERH--KEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180

Query: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240
           EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM
Sbjct: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240

Query: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300
           PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG
Sbjct: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300

Query: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE--------- 360
           QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE         
Sbjct: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVE 360

Query: 361 --------------------FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420
                               FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA
Sbjct: 361 LVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420

Query: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN 480
           KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN
Sbjct: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN 480

Query: 481 GQAAVAAP--------------------------------TAPDFDLEIKEDVEEECSKY 528
           GQAAVAAP                                TAPDFDLEIKEDVEEECSKY
Sbjct: 481 GQAAVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKY 540

[Close]

BLAST of CmoCh03G010610 vs. NCBI nr
Match: KAG7034417.1 (RNA-binding protein 39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 868.2 bits (2242), Expect = 3.7e-248
Identity = 533/633 (84.20%), Postives = 533/633 (84.20%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60
           MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS
Sbjct: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60

Query: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120
           KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE
Sbjct: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120

Query: 121 RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180
           R       KEKEKERERDK RRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER
Sbjct: 121 R------HKEKEKERERDKGRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180

Query: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240
           EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM
Sbjct: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240

Query: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG----------------------- 300
           PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVG                       
Sbjct: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIMMRDGGNTMQSCLINSCCLF 300

Query: 301 --------YVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSNTSGASGAGPYG 360
                   YVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSNTSGASGAGPYG
Sbjct: 301 KVDNINLRYVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSNTSGASGAGPYG 360

Query: 361 AVDRKLYVGNLHFNMTETHLRE-----------------------------FAHLEHAKA 420
           AVDRKLYVGNLHFNMTETHLRE                             FAHLEHAKA
Sbjct: 361 AVDRKLYVGNLHFNMTETHLREIFEAFGPVELVQLPLDLESGHCKGFGFVQFAHLEHAKA 420

Query: 421 AQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDDEGGGLALNAQSRALLMQKLDR 480
           AQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDDEGGGLALNAQSRALLMQKLDR
Sbjct: 421 AQSLNGKLEIAGRTIKVSSVTDHIGAQENVAKSNDLDDDEGGGLALNAQSRALLMQKLDR 480

Query: 481 TGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAP--------------------- 540
           TGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAP                     
Sbjct: 481 TGIATSIAGSLGAPVLNASAPNQRATSLPLNGQAAVAAPVLPANFTPPVLQSVGSPSECL 540

Query: 541 -----------TAPDFDLEIKEDVEEECSKYGHVKHIYVDKNSAGCVYLQYDTVEAAINA 542
                      TAPDFDLEIKEDVEEECSKYGHVKHIYVDKNSAGCVYLQYDTVEAAINA
Sbjct: 541 LLKNMFDPSTETAPDFDLEIKEDVEEECSKYGHVKHIYVDKNSAGCVYLQYDTVEAAINA 600

[Close]

BLAST of CmoCh03G010610 vs. NCBI nr
Match: KAG6604261.1 (RNA-binding protein 39, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 862.1 bits (2226), Expect = 2.7e-246
Identity = 519/588 (88.27%), Postives = 520/588 (88.44%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60
           MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS
Sbjct: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60

Query: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120
           KSEHENGKEDRDH+GRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE
Sbjct: 61  KSEHENGKEDRDHTGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120

Query: 121 RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180
           R       KEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER
Sbjct: 121 R------HKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180

Query: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240
           EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM
Sbjct: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240

Query: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300
           PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG
Sbjct: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300

Query: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE--------- 360
           QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE         
Sbjct: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVE 360

Query: 361 --------------------FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420
                               FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA
Sbjct: 361 LVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420

Query: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN 480
           KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN
Sbjct: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN 480

Query: 481 GQAAVAAP--------------------------------TAPDFDLEIKEDVEEECSKY 528
           GQAAVAAP                                TAPDFDLEIKEDVEEECSKY
Sbjct: 481 GQAAVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSTETAPDFDLEIKEDVEEECSKY 540

[Close]

BLAST of CmoCh03G010610 vs. NCBI nr
Match: XP_022978009.1 (RNA-binding protein 39-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 858.2 bits (2216), Expect = 3.9e-245
Identity = 517/588 (87.93%), Postives = 518/588 (88.10%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60
           MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS
Sbjct: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60

Query: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120
           KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDRE 
Sbjct: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDRE- 120

Query: 121 RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180
                 + KEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER
Sbjct: 121 ------RHKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180

Query: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240
           EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM
Sbjct: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240

Query: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300
           PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG
Sbjct: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300

Query: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE--------- 360
           QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLRE         
Sbjct: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLREIFEAFGPVE 360

Query: 361 --------------------FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420
                               FAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA
Sbjct: 361 LVQLPLDLESGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQENVA 420

Query: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPLN 480
           KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLP N
Sbjct: 421 KSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQRATSLPQN 480

Query: 481 GQAAVAAP--------------------------------TAPDFDLEIKEDVEEECSKY 528
           GQAAVAAP                                TAPDFDLEIKEDVEEECSKY
Sbjct: 481 GQAAVAAPVLPANFTPPVLQSVGSPSECLLLKNMFDPSMETAPDFDLEIKEDVEEECSKY 540

[Close]

BLAST of CmoCh03G010610 vs. TAIR 10
Match: AT5G09880.1 (Splicing factor, CC1-like )

HSP 1 Score: 428.3 bits (1100), Expect = 9.2e-120
Identity = 314/584 (53.77%), Postives = 365/584 (62.50%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60
           M+FDEY+YLEK VE +     KK ++S +ER+E+S RKRE  E  G  G  +E +  +  
Sbjct: 1   MEFDEYEYLEKTVE-EGAGSNKKKEESGNERSERSYRKREGGERQGEEGGEEERVSSRSK 60

Query: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDREE 120
           KS                   R D EE   G ++R+RER+R+           RD+DRE 
Sbjct: 61  KS-------------------RGDGEENGGGKRDRERERHRS----------SRDKDRE- 120

Query: 121 RDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRER 180
                                RDK R+  R KE DRER    RD+  +R+K ++RERRER
Sbjct: 121 ---------------------RDKVREGSRDKESDRERSSKERDRS-DRDKPRDRERRER 180

Query: 181 EKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQM 240
           EK    R   RSRR       EKE EV  R +RR ++KKD  EPEADPERDQRTVFAYQM
Sbjct: 181 EK----RSSSRSRR------EEKEPEVVERGSRRHRDKKD--EPEADPERDQRTVFAYQM 240

Query: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFG 300
           PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGY+EFYD MSVPMAIALSGQL  G
Sbjct: 241 PLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFLG 300

Query: 301 QPVMVKPSEAEKNLVQSNTSGASGAGPYGAVDRKLYVGNLHFNMTETHLR---------- 360
           QPVMVKPSEAEKNL QSN++   G GP    DRKLYVGNLHFNM+E  LR          
Sbjct: 301 QPVMVKPSEAEKNLAQSNSTTVGGTGP---ADRKLYVGNLHFNMSELQLRQIFEAFGPVE 360

Query: 361 -------------------EFAHLEHAKAAQ-SLNGKLEIAGRTIKVSSVTDHIGAQENV 420
                              +F  LEH+KAAQ +LNGKLEIAGRTIKVSSV+DHIG Q++ 
Sbjct: 361 LVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVSSVSDHIGTQDSA 420

Query: 421 AKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATSIAGSLGAPVLNASAPNQ------- 480
            KS D DDD+GGGLALNAQSRA+LMQKLDR+GIATSI GSLG P LN +A NQ       
Sbjct: 421 PKSADFDDDDGGGLALNAQSRAMLMQKLDRSGIATSIVGSLGVPGLNGAAFNQPGMNPSF 480

Query: 481 -----RATSLP---------------LNGQAAVAAPTAPDFDLEIKEDVEEECSKYGHVK 528
                  T++P               L      A  T P+FDLEI++DV +ECSKYG V 
Sbjct: 481 PTSVLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADECSKYGPVN 516

[Close]

BLAST of CmoCh03G010610 vs. TAIR 10
Match: AT2G16940.1 (Splicing factor, CC1-like )

HSP 1 Score: 339.7 bits (870), Expect = 4.3e-93
Identity = 279/599 (46.58%), Postives = 354/599 (59.10%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60
           MDFDEY+YLEK VE+                         ++ E G+GG  DE++K    
Sbjct: 1   MDFDEYEYLEKTVENP-----------------------HLENEVGNGGG-DEKVK---- 60

Query: 61  KSEHENGKEDRDHSGRAR-DRHRRDREEETDGVKERDRERNRTRDRGSSEKERDRDRDRE 120
                 GKE      R+R  RHR D++      KERD + +  R + S    R R RDRE
Sbjct: 61  ----SEGKE------RSRSSRHRGDKK------KERDEDEDGRRSKRSRSHHRSRSRDRE 120

Query: 121 ERDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKEKERERRE 180
              R+RH+   + ++R+R+KD   +ER+    K+++R+RDKDR  K R+ EK++ R  R 
Sbjct: 121 ---RDRHRSSREHRDRDREKDVDKEERN---GKDRERDRDKDRDSKGRDHEKDRSRRSRS 180

Query: 181 REKREREREEERSRRSRSRSVREKEREVDVRENRRMKEKK-DMVEPEADPERDQRTVFAY 240
           R +R R +E E+S     +    K+R+   R+ RR K+KK D VEPEADPERDQRTVFAY
Sbjct: 181 RSERHRSQEREKSLEIEPKERETKDRD---RDRRRHKDKKEDKVEPEADPERDQRTVFAY 240

Query: 241 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLL 300
           Q+ L+ATERDVYEFFS+AGKVRDVR+IMDR SRRS+G+GYVEFYD MSVPMAIALSGQ L
Sbjct: 241 QIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPL 300

Query: 301 FGQPVMVKPSEAEKNLVQSNT--SGASG-AGPYGAVDRKLYVGNLHFNMTETHLR----- 360
            GQPVMVKPSEAEKNLVQS T  +GA G  GPY    R+LYVGNLH NM+E  LR     
Sbjct: 301 LGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFES 360

Query: 361 -----------------------EFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQ 420
                                  +FA LE A+ A +LNG+LEIAGR IKVS+VTD     
Sbjct: 361 FGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVP 420

Query: 421 E--NVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGIATS------------------- 480
           E      + DLDDD+GGGL+LNAQSRALLMQKLDR+G A+S                   
Sbjct: 421 EAGQTQTTGDLDDDDGGGLSLNAQSRALLMQKLDRSGTASSTGLTTAASFNGGVSTISSL 480

Query: 481 ------------IAGSLGAPVLNASAP------NQRATSLPLNGQAAVAAPTAPDFDLEI 528
                       +AG  G+ ++    P         +  L L      +  T  DFD +I
Sbjct: 481 AAPALVQGSFPAVAGLAGSGIIPGVIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDI 540

[Close]

BLAST of CmoCh03G010610 vs. TAIR 10
Match: AT2G16940.3 (Splicing factor, CC1-like )

HSP 1 Score: 317.8 bits (813), Expect = 1.8e-86
Identity = 281/621 (45.25%), Postives = 359/621 (57.81%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQDDKETKKAKKSESERNEKSSRKREVDEEAGSGGRVDEELKVKRS 60
           MDFDEY+YLEK VE+                         ++ E G+GG  DE++K    
Sbjct: 1   MDFDEYEYLEKTVENP-----------------------HLENEVGNGGG-DEKVK---- 60

Query: 61  KSEHENGKEDRDHSGRARDRHRRDREEETDGVK-ERDRERNRTRDRGSSEKERDRDR-DR 120
                 GKE R  S R R   +++R+E+ DG + +R R  +R+R R   ++ERDR R  R
Sbjct: 61  ----SEGKE-RSRSSRHRGDKKKERDEDEDGRRSKRSRSHHRSRSR---DRERDRHRSSR 120

Query: 121 EERDRERHKEKEKE------KERERDKDRRDKERDRERHKEKDRERDKDRRDKEREREKE 180
           E RDR+R K+ +KE      +ER+RDKDR  K RD E+ + + R R +  R + +EREK 
Sbjct: 121 EHRDRDREKDVDKEERNGKDRERDRDKDRDSKGRDHEKDRSR-RSRSRSERHRSQEREKS 180

Query: 181 KERERREREKREREREEERSRRSRSRSVR---EKEREVDVRE----NRRMKEKKDMVEPE 240
            E E +ERE ++R+R+           V    + +  +  R+     R   +K+D VEPE
Sbjct: 181 LEIEPKERETKDRDRDRRFILMLLGPLVLPSVQLDGALPCRDFSCFIRHKDKKEDKVEPE 240

Query: 241 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGK---------VRDVRLIMDRNSRRSKGV 300
           ADPERDQRTVFAYQ+ L+ATERDVYEFFS+AGK         VRDVR+IMDR SRRS+G+
Sbjct: 241 ADPERDQRTVFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVRIIMDRISRRSRGI 300

Query: 301 GYVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSNT--SGASG-AGPYGAVDR 360
           GYVEFYD MSVPMAIALSGQ L GQPVMVKPSEAEKNLVQS T  +GA G  GPY    R
Sbjct: 301 GYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGAR 360

Query: 361 KLYVGNLHFNMTETHLR----------------------------EFAHLEHAKAAQSLN 420
           +LYVGNLH NM+E  LR                            +FA LE A+ A +LN
Sbjct: 361 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLN 420

Query: 421 GKLEIAGRTIKVSSVTDHIGAQE--NVAKSNDLDDDEGGGLALNAQSRALLMQKLDRTGI 480
           G+LEIAGR IKVS+VTD     E      + DLDDD+GGGL+LNAQSRALLMQKLDR+G 
Sbjct: 421 GQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSRALLMQKLDRSGT 480

Query: 481 ATS-------------------------------IAGSLGAPVLNASAP------NQRAT 528
           A+S                               +AG  G+ ++    P         + 
Sbjct: 481 ASSTGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVIPAGFDPIGVPSE 540

[Close]

BLAST of CmoCh03G010610 vs. TAIR 10
Match: AT2G16940.2 (Splicing factor, CC1-like )

HSP 1 Score: 314.7 bits (805), Expect = 1.5e-85
Identity = 274/633 (43.29%), Postives = 356/633 (56.24%), Query Frame = 0


Query: 1   MDFDEYDYLEKAVEDQ-----------DDKETKKAKKSESERNEKSSRKREVDEEAGSGG 60
           MDFDEY+YLEK VE+            D+K   + K+       +  +K+E DE+     
Sbjct: 1   MDFDEYEYLEKTVENPHLENEVGNGGGDEKVKSEGKERSRSSRHRGDKKKERDED----- 60

Query: 61  RVDEELKVKRSKSEHENGKEDRDHSGRARDRHRRDREEETDGVKERDRERNRTR-DRGSS 120
             ++  + KRS+S H +   DR+     RDRHR  RE      ++RDRE++  + +R   
Sbjct: 61  --EDGRRSKRSRSHHRSRSRDRE-----RDRHRSSREH-----RDRDREKDVDKEERNGK 120

Query: 121 EKERDRDRDREERDRERHKEKEKEKERERDKDRRDKERDRERHKEKDRERDKDRRDKERE 180
           ++ERDRD+DR+ + R          + E+D+ RR + R  ERH+ ++RE+  +   KERE
Sbjct: 121 DRERDRDKDRDSKGR----------DHEKDRSRRSRSRS-ERHRSQEREKSLEIEPKERE 180

Query: 181 REKEKERERREREKRERE------------------------REEERSRRSRSRSVREKE 240
             K+++R+RR   +   +                          E  SR S   +   K 
Sbjct: 181 -TKDRDRDRRYTSELVIDFIIYVHWYCLLYNLMGHVPFKIIIVIEGTSRASCVYAYWRK- 240

Query: 241 REVDVRENRRMKEKKDMVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRL 300
                   R   +K+D VEPEADPERDQRTVFAYQ+ L+ATERDVYEFFS+AGKVRDVR+
Sbjct: 241 --------RHKDKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRI 300

Query: 301 IMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLFGQPVMVKPSEAEKNLVQSNT--SGA 360
           IMDR SRRS+G+GYVEFYD MSVPMAIALSGQ L GQPVMVKPSEAEKNLVQS T  +GA
Sbjct: 301 IMDRISRRSRGIGYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGA 360

Query: 361 SG-AGPYGAVDRKLYVGNLHFNMTETHLR----------------------------EFA 420
            G  GPY    R+LYVGNLH NM+E  LR                            +FA
Sbjct: 361 GGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFA 420

Query: 421 HLEHAKAAQSLNGKLEIAGRTIKVSSVTDHIGAQE--NVAKSNDLDDDEGGGLALNAQSR 480
            LE A+ A +LNG+LEIAGR IKVS+VTD     E      + DLDDD+GGGL+LNAQSR
Sbjct: 421 RLEDARNALNLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQTTGDLDDDDGGGLSLNAQSR 480

Query: 481 ALLMQKLDRTGIATS-------------------------------IAGSLGAPVLNASA 528
           ALLMQKLDR+G A+S                               +AG  G+ ++    
Sbjct: 481 ALLMQKLDRSGTASSTGLTTAASFNGGVSTISSLAAPALVQGSFPAVAGLAGSGIIPGVI 540

The following BLAST results are available for this feature:

BLAST of CmoCh03G010610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5RC80	5.6e-37	36.99	RNA-binding protein 39 OS=Pongo abelii OX=9601 GN=RBM39 PE=2 SV=1	[more]
Q14498	2.1e-36	36.55	RNA-binding protein 39 OS=Homo sapiens OX=9606 GN=RBM39 PE=1 SV=2	[more]
Q8VH51	2.6e-34	36.02	RNA-binding protein 39 OS=Mus musculus OX=10090 GN=Rbm39 PE=1 SV=2	[more]
O13845	1.7e-22	29.86	RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	[more]
Q86U06	4.0e-11	32.22	Probable RNA-binding protein 23 OS=Homo sapiens OX=9606 GN=RBM23 PE=1 SV=1	[more]

BLAST of CmoCh03G010610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GD19	4.6e-252	89.63	RNA-binding protein 39-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1ISX3	1.9e-245	87.93	RNA-binding protein 39-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114781...	[more]
A0A6J1ILK9	3.8e-238	85.20	RNA-binding protein 39-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1114781...	[more]
A0A1S3B2E3	1.2e-236	84.41	RNA-binding protein 39 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 S...	[more]
A0A1S3B1Y4	3.9e-235	84.12	RNA-binding protein 39 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485239 PE=4 S...	[more]

BLAST of CmoCh03G010610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949796.1	9.5e-252	89.63	RNA-binding protein 39-like isoform X1 [Cucurbita moschata]	[more]
XP_023543913.1	1.3e-248	88.78	RNA-binding protein 39-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG7034417.1	3.7e-248	84.20	RNA-binding protein 39, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6604261.1	2.7e-246	88.27	RNA-binding protein 39, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022978009.1	3.9e-245	87.93	RNA-binding protein 39-like isoform X1 [Cucurbita maxima]	[more]

BLAST of CmoCh03G010610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09880.1	9.2e-120	53.77	Splicing factor, CC1-like	[more]
AT2G16940.1	4.3e-93	46.58	Splicing factor, CC1-like	[more]
AT2G16940.3	1.8e-86	45.25	Splicing factor, CC1-like	[more]
AT2G16940.2	1.5e-85	43.29	Splicing factor, CC1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 156..198
None	No IPR available	COILS	Coil	Coil	coord: 116..148
None	No IPR available	COILS	Coil	Coil	coord: 24..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..230
None	No IPR available	PANTHER	PTHR48036	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED	coord: 1..351
None	No IPR available	PANTHER	PTHR48036	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED	coord: 459..528
None	No IPR available	PANTHER	PTHR48036	SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED	coord: 352..460
None	No IPR available	PANTHER	PTHR48036:SF5	CC1-LIKE SPLICING FACTOR	coord: 352..460
None	No IPR available	PANTHER	PTHR48036:SF5	CC1-LIKE SPLICING FACTOR	coord: 459..528
None	No IPR available	PANTHER	PTHR48036:SF5	CC1-LIKE SPLICING FACTOR	coord: 1..351
None	No IPR available	CDD	cd12285	RRM3_RBM39_like	coord: 460..527 e-value: 7.13404E-29 score: 107.63
None	No IPR available	CDD	cd12283	RRM1_RBM39_like	coord: 234..306 e-value: 9.05516E-45 score: 150.449
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 334..378 e-value: 1.4 score: 5.3 coord: 442..525 e-value: 0.013 score: 23.4 coord: 234..306 e-value: 1.5E-17 score: 74.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 469..522 e-value: 3.6E-5 score: 23.5 coord: 240..302 e-value: 2.3E-11 score: 43.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 233..310 score: 15.54503
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 452..537 e-value: 5.4E-22 score: 79.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 164..318 e-value: 1.2E-27 score: 98.8
IPR029123	Splicing factor RBM39, linker	PFAM	PF15519	RBM39linker	coord: 396..453 e-value: 3.0E-11 score: 44.2
IPR006509	Splicing factor, RBM39-like	TIGRFAM	TIGR01622	TIGR01622	coord: 116..351 e-value: 2.0E-79 score: 265.9
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 230..379
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 467..526

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G010610.1	CmoCh03G010610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding