CmoCh03G009660 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G009660
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ribonuclease III domain-containing protein RNC1, chloroplastic-like
Location	Cmo_Chr03: 7246667 .. 7257942 (+)
RNA-Seq Expression	CmoCh03G009660
Synteny	CmoCh03G009660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTCTACTCCCAACCCCTCCCAAAACCCTGCAACGAAGGGCAAAATATTGAACTTCATACGGAGGATTTTGCCCATTCTTAAACCCGCAATGTCCAGTTTCTGGTAGCCGGAATACTTGACGCTCGGCCTCCGACCTTCCGAATAAACCCTCCCAACATTATCTTCATTATTCACCACCGATGGAACTTTCTTCTTGTTTTGTTAAACTTTCCTCCCCTACTCCTAATTTCTCTTTCTCGTCTTCTTTAACCCCATTTGTTGTAAAAATTCACCCCAATAATCCCAGTTTATCGAACCCCTCTTCTGGGGGTCTGCGTATTTTTGCAGTTGCGGTTGACCCACAACAAGAGCTGCCCAAAAACAACCCTCAGAGACTGCTCAAAGAGCTCGAGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTTCCCCCAAGAAGGTTTATTCTTAGACCGCCGTTAGATGACAAGAAGTTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTACTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCTGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAGCAAGCCCTTGGATACCCCCTTGAGCCCTCCGATAGTTATGGAGACGATAATCCTGCAAAGCAATTTGATACTTTGTTGTACTTGGCGTTTCAGCATCCCTCATGCGAGAGAACAAAGGCCCGACACATAAGGTCGGGGCATTCGAGGCTATTGTTTTTGGGCCAATATGTAATCGAATTGGCGTTAGCAGAGTATTTTCTGCAGCGATATCCTAGGGAATCGCCAGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCACAGTGGATCAAAGCTGCCAGTTTACAGAATTTGATATTCCCATATGACGACATGGATAAGATGGTTAGGAAGGACCGCGAACCACCTGTGAAGTAAGTTTGGTATTGTCTTTTCATTGTCTCTAATTTTTCTTTTTCCCATTATAAAATGATGCTGAGAATAAGATAATTGGAGAGTTGTCATAGGTATATTAAGCTTAAGACCCATGTTAAGTTTTAGAAGAATCACAAAATGTGGGATCATCATCAGAGTGAAAAGTACCAAATGCTTTAGGAGAGCTGATTGTGCCATATGATTGTAATACCTTGTATGGTTGACTAGGAACTGGGATTTATCGGTCAGAAGAGGCATCAATAAGGCATTTGATGAGGGTAGGTGTTGAAGGTATGGTTGCTGCTCCTGGAAATCTAGATTTAGGCTAGCTTAGTCTGTGATGGTCGTGGACACTTTTTTGGATAAGAAATAGTTTCATTCATAATATGAAATTTCAAAAGGGGTGAAGAATGTAGCTCCAGAATTTCATAGCATATTCACACTCAACCAGAAGATGGTCGTGGACACTGAGCTTCATTATATAGATGGTCACCCATTTGTGATGATGATGCTACAAAAGACCAGCTAGAGACAATGTTAAGGAAGTTGTTCCCCAGAAAATGTAACATAAAGCCTTAATTTGAAGTTATATGGGATCTTTTATTGGTGGTTTGGTGCCTTCGGGTCAATTCTTTATCAATAACTTATGTGAAACTAGCCCGACATGTTCTTTCCTTGAATCTAATACCGGCAGGTTACGGACTCCTTCCATGAATGTGCTTCCAGGCCAATATGATTATCTTTTACCTACTTGGCTTTCCATGTGCCTCTTAATCGTGGATGTGCTTTTACTTCAAATCATGGTGTTACTTTCCCTTGCATTTCTGAGCGAACTGTCTTGCACTTAATTGGTAGATTATTAACTTACTTGGGAACTTAAACTCTGGTCGTTTCTCTTTCTGAAATAGTTTGATTCAATCTATTATATCAAACAATGCGAGTCTAAAATTAATTTTCTTCAAGCAGATCTGTATTTTGGGCGTTGTTTGGGGCAATATATTTGTGTTTTGGAATGCCAGAAGTGTACCGGGTCCTTTTCGAGGTGTTTGGAATGGACCCAGATGCAGAGGAATGCGAACCAAGGTTACGCAGGCAACTCGAAGATGTAGATTATGTCTCTGTTGAATTTGAGGACAAAAAGATCAGCTGGCAAGATATGGTTGCCTATAAGGCAAGTTTCATGCTTATTCTTAACAGCACAATAAACTATTATGCCGTTGTTTTCATCTTTCTTTAAGGATGAAGTCATCTTACTCTTGTGATTCGTATTTTCCTTTCTTCATTTTCAGCCTCCAGAAGATGCTCTGTTTGCGCATCCTAGGCTCTTCAGAGCTTGTGTCCCGCCTGGCATGCATCGATTTCGGGGTAATATATGGGATTATGATAGCCGGCCTCAAGTCATGCAAGCACTAGGATACCCTGTACCTGTTACTGATAAAATTCCCGAGATCACAGAAGCGAGAAATATTGAACTCGGACTTGGACTGCAGGTACTCCCCCACCCACCACCGTGCACATACACATACACACACGAACTCACACACACCACAAATGACTTGTCTTTCTCCTCGTTCATAACCAAATCATGATCATACTTCTATTATATTCTCAATGTCGGTTTTGGCGTGTTTATGAAGGCGATGCTGGTTTTGGATTTTTGTTGCATCTTATGTGTGAAGGAGGATAATTAGAGAATGTCTTTAGTCTAGAATCTCCTCTCGATGTTTGATATAGATAGATATGATGGTTTTAAGGACCTTTCAAGGCTATATGCGAATTCTGTTAAACAGCATGATCAAGTTTAATCTCAGGCAATTTCTTAATCAAATGCAGCTTTGCTTTTTGCACCCATCAAAACACAAGTTTGAGCACCCTCGTTTCTGCTACGAGCGATTAGAATACCTCGGCCAGAAGATCCAGGTAAGACCTTTCTTACTCTTTCTCCTATCTATCGACATTTTTCGCGCATTGTGTTTAGATCAAGAAACTTAAGGTGGTCGGCCTGATTGTGTTTGTTCAAGGACATTGTGATGGCGGAGAGACTGTTGATGAAGCATTTAGATGCTCCTGGAAAGTGGTTGCAGGAGAAGCACCGGCGGTTGCTCATGAACAAGTTCTGCGGGCGGTATTTGAGGGAGAAATATCTTCATAAACTTATCGTCTACTCCGAACAAGTTCAAGATGCATACGAGAACAACCGGAGGCTTCGAAACCCAGCCACCACGGCTGTTCAGCAAGCCCTTCATGGACTTTCTTATACAGTTTATGGAAAGCCTGATGTGAGGCGTCTCATGTTTGAGGTCTTTGATTTTGAGCAAATCCAACCTAAAGCTGTCTGAGGATCTATGAGGTAGATGATGCAAGCCCTGGCTAGTCCCTTGGATTGCAACATTATAGTATACTATATATAAAATCCTCGTATATCTCATTAATGTGCAAACTTTTAATTTATGAAGTCGTTACATGGAAATTTACATCGATATGTTGACATTTCTATCGACGTTCACATGTTCATATTGGGTGACTCAGCATTTATATGGCAAAAAAAATTCATGAACCATTAAAATTAAGTAACAAAATGTCACTAATATAAGTGATAAATATATATATTTTTTGTATTAAGTAACAAAAGCAAGAACCTCTGGTCTCTTCCACGTTGTAAGTTCAAACGGAAATAAAACGGGATGGTAGCAGTGACGCGCAAGGAGAGCTAAAGTTTCTGCGTCAAATTGCAATAATGCGCGCGCTATCACGTCGTCTACATTAGCCATTTCAGCCGTACCGATATTTCCCCTTCTGTGTGTCTAGACTTGGTGTTTCTGCGAAGCGCAAGCCTTCTCTCATGGCCTGGTTCTCCGCCACATGAACCATGTGCCCATCCGCCTTCTCATAGTGTGCGCCGTCTTTTCCCTCCCTTTTCCGGTCGTCCACTCCCCTTCCTTACGCTCCCCTCCCCTTCCACCGCCTTCCGACTGCAGTTTCTTCAACTCTGTTGGTGTTATTCAGGGGGATAAATCTACACCGATCGGATTGTTTGGCTCTAACTACCCATCCATGTCTAAAGCCCGTGTTTATGCTGATGTCAATGTTTTGCGCCCCAAGGACTATTGGGATTACGAATCTCTTGCCGTTCAATGGGGGTAAGTCTTAAACCCTAAGATTTCGGTGGATTTTTCGTTTGGGCAACTTGATTTTAGGTTGCTTTGTTGTTGCGATGTTATACCGTTTCTGGGTATATAAAATCATCACTGCATGGTCTGTAACATAATTGCTATGAGCAATTAACTTTCTTTCTTTCTATCTCTCTACCATATTCTACTAGTATAGTTGAGGATGGTTGAAATTGACAGTACTTGGTAAAATTGGATCTGAATTTGGAGAACTTTGCTTTACCAACTTCTTTCCCGATCAAATGGAGGATGAATCTGGAGCATTCTATCATTTTTGTTTTTTTCTTGGGGGAGTACTATTTCACACTTTTTACTGGGTTTTCTCTCTCTTTCCCCAGTGATCAAGACGATTATGAGGTTGTCCGGAAAGTTGGAAGAGGAAAATATAGTGAGGTATTTGAGGGAATAAATGTTAATAACAACGAGCGGTGCATAATCAAGATCCTTAAGCCTGTTAAGAAGAAGAAGGTATGTTTCAGTTGTCTCTATCAGTTTGATGGGAAATACTGTGATGGTCATTTATTTGCAATGTATCTCTTATGGGATTGGTCATGGTAATTTAATGTGAAAGATTATGCTCTTTTGGCCTCCGTCTGTTATCTAGAAAGTGTGCAACAATGCGTGGAACATTGCCCTATTGTGATGCTAGTAGCTCTAATTTGAGACCTGTATGTTGAATGAGATCATCTCAGCTACAATTTGAAGATTCAGTTGTTCTTCTGCAGATAAAGAGAGAGATAAAAATACTTCAGAACCTCTGTGGGGGTCCAAACATTGTCAAGCTTTTTGATATTGTCAGAGATCAGCATTCGAAAACACCCAGCTTGATTTTTGAGTATGTGAACAGCACAGATTTCAAAGTACTTTATCCAACACTGACTGATTATGACATACGCTACTACATATATGAGCTTTTGAAGGTAAGGATACATCATGGAAAATTGAAATGTATGTTTGCATGACAGCTCCCCTTTGTTCTTCCAACTTCTAGTGGCGTGTTCATTAAAAATGATAACATGTCTATGTTTTAGAAGTTTGAATTATATTTTTTGGTTCAGAATTAGTTGGGCACGGGTACAGGTATTATTTTTTAAAAGAAAATTAATCGATTCTATGAAGGCTATTGATCTTTTACTAGGGTTGTGGTTTAATGATGCTGATTTATAGGAGCTGTTCATCTCTAACTTATTACAGTTGAGGATGTTTATCCAGACCTTATTTTTTTTACTACCCTCCCTTCGGTTCAGTTATGAAGATCTTGCTATAAGAACAGTGTGGGGGTTCTGAAATATTAGGTCTTCATCTCAATTATCTTTTGTATGGCTCTTCTCTGTAATATGATGCAGCCCTATCTTACATACAGGCATTAGATTATTGCCACTCTCAAGGGATAATGCACAGGGATGTCAAACCTCACAACGTTATGATAGACCATGAGTTGCGGAAACTTCGCTTGATTGACTGGGGCCTTGCTGAATTTTATCATCCTGGCAAGGAATATAATGTTCGTGTGGCATCAAGGTAACATCCAATGAAGTTAGATCTTGAATTTTGTCATTTGCAGTTAAACATGACCAAGTGTTGGAAGAAAGTATTTGAAAAGGTATATATCCCATGAATAATTTGTTTTATTGAACTGACATCATCTTAACAGAACAAATAATAATTTTTTCATCAATTTAGTTTGATTCAATTCAAACTAATTTTAGAATAAACCAACTTGAACTTTATAACCTGACCGAATCTGAATGCCTTGTAGTTTGTATGATTAGGTTTTTGAGTCATTAAGTTTTTTTACACCCCAAATATTAGGTTTTCTGAGACTTTAATGGATGACATTGGTTGTTCAGGAGCTCATTCATTCATGTCAATGCCTAAAAACACTATCGACATTTTTCCATCATAGAATTAGTTGAATGCTTGAAAACATCTGTTTTCATCATAGGTTTATTTTAACACTTCCCTTTGGGCATCAGTGACTTAAAAGTTTTTGTTTTTTTTTTTGCTATTATCCTCTAGCTCTAATCCTTTTAAGTTGGATGCCTTTTTTGTATGGCTTGTTTGGTTGAGGGCATTTCATTCTGCTGTTTTTTTTAAATGACCTTGTCTTTTCTTTCACTTTTTCTAATGAAAGCATGTTTTCTTTATTAAAAAGAATGAAAAGCTGGGATTTGTTGCCATTTTATTTGTGGTATATGAAGAGTGTCTCTCAGTTTTTCTGCATCGATTTTGGTATATGTTATTTTGTTGGTTGATGAAATTTATATCCATTTTCTCAGATACTTTAAGGGTCCTGAATTGTTGGTCGATTTGCAAGATTATGATTATTCTTTGGACATGTGGAGCCTTGGTTGCATGTTTGCTGGAATGGTGAGCAATTTCTATTCTAAAGATTTTGAACTTAGCAAACCATGAACCTATGCAAACCATAATTTGTGCTTGAGCAAGTGTTTCCATGTTTGTTCTACTGTAGATTTTTCGCAAGGAACCTTTCTTTTATGGCCATGACAATCATGACCAGCTTTTAAAAATTGCAAAGGTAATGTATTCGAAGTTGGTGAAAATGACATTTTCTCTCTCTTGTACTTTGGTCTTTAATTGTAAACATAATCTGAATAAAGAATATAACTATTGGTTCTGGATGCAATTTCAGGTTCTTGGGACAGATGAATTGAATGCATATTTGAACAAGTATCATCTAGAGCTCGATCCTCAACTTGATGCACTTGTTGGGAGGTATGTGTAAAATTTGATATGATCTTGTGGAGAAGGAATCAGTTCTGTGAATTCTAAAAAACAGACGCTTCTAATTTTGAAGAGAGAAGCTGTTATTCCAAGATACGATAGTTTTCTTGTAGAATATGTTTTATTGCATAAGGTATTAAACTTTTGGGCATTCAAGAGTTGGATGCTTTTAAGTTTTAAACTTACCAGTCAACTTCTTGGTGGAAGCCTGCCTACCGAAGTGATATTAGTATTCATGAGTTTTTTAGAGTGGAACATTGTTCAGTTGGGATGATTCATTCCATGTGTATATTTATTTACTTGGTCACCTATGCTTATTTTTAAAAATAGAAGTGGAGATTTATATTACTAAATCTATTTACATATACTTCTGCAGGCACAGCAGGAGGCCGTGGTCTAAATTTATCAATGCAGACAATCAACATCTTGTTTCTCCTGAGGTAATCTATCTCTTGGTTATTTGAAAACAATGGCGTATGTATCCACCAGTTTGTCTTTTTTTTTTTTTTTTTTTAACAAGAACAAAACTTTTCATTTAATAAATAAAAGAAGACTTACTCAAGGGATGCAAATTCCGAAAGGTGTCAAATTAACTACAAACAAAGTTACAAAGGATAACAAAAATATTCCAATTTAAATTAATATCCTCTAAAGAAAAACCATCAATAGAATTGGAGAGAAAACACTAAACGGGGGGGTATGAGACGAGCTTACTCAAACTGATATGGCCAAGAACAATGTCTATCTTAAAGTGGGTTCTTTCCAACCATAGTTCTGAATTCAAAGCCTTTCTCATTATGTAATGTCTCTGACATAGAACTTGTTGTCATTTCTATATAAAAATGAACGAGTATTTCCAGGAGAGGAGGATAAGAAAGGCTTTAGCTGAAATATTCAGCATTTTTCTAACAACGAGTTGTGACTTTTCAAATGCAGGCCATTGATTTTCTTGATAAGCTTCTTCGATATGATCACCAGGACCGGCTTACGGCAAGAGAAGCTATGGTATTTTAACTCGTTTAAATTTTGCCCCATCACATTTGCTAATTAAGAGCTCATTGATCATATTTCCTTGCTTCTACCTAATGCCTGGCTGAAACCTTTTGATTTATCGGATTTAGACGAGAGAGCTGTAAGAGTTATTCGTATGAAAGCTACTTGGTGAAAGATTTAATACTTATTGCTCCTTTTAGAACTTGCTTCTTTTCCTCCCAAGCCATTGTAACTTCCAAAATAATAAGGTTACCGTATACATACTTTTATGTGGATCCTTTTCTGGACTCAACCAAGGTTTCATTCCAAACTAGAGTAAAAATGTATTTCGCTGATTGATTTTGGGAGATCTCCATTGATTTCTAGGTTTAATTCAATATTTTAATTCTTCATACATATTTATAGTTCTTCATTAGACTCGAGGGCAGACATTTTATTAATTACCGTAGCATATTCAGTGATGTTAACAATTTGCTGGTCTGTATACCTGTTGCAGGCACATCCATATTTCTCCCAAGTCCGGGCTGCTGAAAATAGCAGGATGCGTACACAGTAGAAATACATTATCCCCGGAGTATTTGCATAAACTAAATAGTGATATGGAGTATGGGATGTTTTAAATATCAGTGTTACTAAAGAAATATGAGCTGCCCTGTTGTATTATAGTTTAAGAAACTTAACCTAAAAAGGACTTCCATATTATTTTGAAGTCGCTTTTCTTGTTCTGGAGAAACTATATATTACGTGCAAATTCTGAAGCATGTCTTCCAAACTCTTACCAAATTCTTCATTACTTGTCTTTTCAAGATCTTTCAGCGTTCTAATAACTTTAAACTGTGTTTAATTAAGCTGTCTAATTGCTCTTTCGCCTTCCAATTTAGTAATTATAAATATTTTTTATTTAGGGTCTTGTTAATTAGAAAAATTATATTTGAAAATAATTAATAAATAGTTTCCATTTAGGTTCAATTTTTTTTTTTTTTTTTTTTTTATAAGAATCGAGCTTGGCTTGCCCGTGACTCATCCTCTTCCTTGGAAATAATCTCTCCCACTAAATTTCCTTTTAATTATTGTTTTAGTTACGGCATTTTATTTCTTTTTAGAACAGAGATAGAGATGGAGATGGAGTGAATGCATTGAATTTGTTGGCTTTTGGTTGGCTGTCGTTTTTTTATTGCTTTGTGCGACCAATAAACGTGATATGATAAAAGCTTCAATATAGTTTAATTATAATTTGGAGTGTGCTGCTGCTTCTTCTCAAACCCAAAAAATGAAAACTTGTACGAAACATCAAAATTAATTTGAATTTATTTGAATATTATATATTTTGGATTTCATTATACAGAATATATAAATTAAAAAAATTAGTATTTTGAAGCAAATGTTTAAGCTTATGATTCATGTTGATGAAACTCAAGATGAAAGGAATAAGTCAAATTCCTTTGTTTTTTTTTTTTTAAATACTTTTTTCTCAAATTAAACCTTTTCTTTCACATTAATTCTTTCCATTTATTTTAGAGTACAACTTTTTTCTTCTTTCTTTTTGCACTATGAAGTAATTCCAAAAATTCGGTTTTGTATGATTTTTAGTACTTACCCACTTAACTTAAAGGTTAAGGTAGATTGCCTATATCATACCCTTATGATTTTTAAAATTGTTTGTTCTTGAAAATATGAGGGATTATTTATCTGTCCCTCAAATAGACATCTCCAGATTTATTGGATATTTTTTTTTAGTTGAGACCAAATAAAAACAATTATCAAGTTAAAAGACATTTTTTTTTATGTAATTAAAGATTTAGTATTTGTAGTTTACAAATTATAACAACTCAACCCTTTTGGTGTACAATATTATGAAACTTTAATTTAAAAAAATTTACAGTATAGAAGGATGAATTTATTACAGATTAAATTTGTTTATAAACTATAAAAACTTGAGAATTGGTATTTATGGTCGTACGGACTAAATTGTTATGAATTTGAAATTATGGGACTAAATTGTTATGAATTTGAAATTATGGGACTAAATTGTATATATCAAATATCATGAAATAAGTTATAACAAATTTAGAAGTAGATTGAGTTTAAGATAAGTTGATATGAATAGTATTTTTAACTCAATTTTTACAACAATATATATATAAAATTTGAAAACAGAAAAAGAAAACAAAAAAAATCGTATATCATTTTGTGACCAAATTTGTAAGGAATTCGAAATATAAGTTTGGTAGGAATCTATAATATTTGATTGATTTGGATTCATGTCCCTAATAAAACACCAGCGGCGTACATGATCGTGATCTCGTCGTGTTTGGCAATGATTACAGAAGGCAGCATCAGGAAACACGGAGGGGTGTGATCTGGATCGTCGTTCTCAGTTGGTGCAAGGGTTCCATTACAACACCTTGCTTTTGAGACGATTGCCAACATCATGGGCCCGACACCTAATAGCTGCCTCTGATGCTCATGCGGACTCGAATATACTTTGCTCAGTTCTTCCAAAATTCCCTTCCTTCTTTTTTTCCCCAACTCTTATCTTCATCTTGATTTCCTTCTCTTTCTCTCTGTCTAATCTCATTTTCCACCGCCGCTGCTAATTCCGCCGTTCTTCTTTCGGGTTCATCCATCACTTCTGTTGAGTTATGGAGTTTTTTCTTGAACTTGCGCTAACCATTAGTCTTCCTCTTCTTATTTCCTTTGTTGTCAGTAAGTTTCTTTCCAGGGCCTCAACCGACGAAGAATTGGCTCCGTTTGGCTTTGACTTAGGATTTCGATCACGAATTCGTAATCTAGAGAGTGATAAACCTAGCGTTGTTGTTGAAGATTTTGTCGGTGCGGATGAGAACGCAGAATGCGAATTGAAACAGGGCAATTTGACCGGGATCCTTGAATCGAGAGATGAAACTGAGAGTAAATGCGAATGTGTGTTGATTGACTCTGTGAGGATTGTTGAAGATAGATTAGAGAGTGACTCCGATAATACTGGTGGTGATTGCGGCGGTGAGGTTGCAGGAAAGGTGATCGATGAAAGTTCTGTTAGGACCAGGTGTGAAGAAACTGGAATCGGTCCGGATGAGGAAGACGTATGCAAGGACGATGGAGTTGAGGCGTTTGAGAATGATCGGAACAAGGAATCCGGTGGAGTAAGCGAGGGAGGATCGGCGGAGGAGATTGCCGTCGAGGATGACGATTGGGAGGGAATTGAAAGAACTGAATTGGAGAAGTTATTTGAAACCGCAGTAGAGTTTGTGAAGATTCGAGATATCGAGGATCCCAAATTTGGCGGTGAATTGAAGATGCGGCTGAACGGGCTTCACAAGATAGCCATAGAGGGGCCTTGCAGAGAACCACCGCCAATGGCTTTGAAGATCTCTGCTCGAGCCAAATGGTAA

mRNA sequence

CCTTCTACTCCCAACCCCTCCCAAAACCCTGCAACGAAGGGCAAAATATTGAACTTCATACGGAGGATTTTGCCCATTCTTAAACCCGCAATGTCCAGTTTCTGGTAGCCGGAATACTTGACGCTCGGCCTCCGACCTTCCGAATAAACCCTCCCAACATTATCTTCATTATTCACCACCGATGGAACTTTCTTCTTGTTTTGTTAAACTTTCCTCCCCTACTCCTAATTTCTCTTTCTCGTCTTCTTTAACCCCATTTGTTGTAAAAATTCACCCCAATAATCCCAGTTTATCGAACCCCTCTTCTGGGGGTCTGCGTATTTTTGCAGTTGCGGTTGACCCACAACAAGAGCTGCCCAAAAACAACCCTCAGAGACTGCTCAAAGAGCTCGAGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTTCCCCCAAGAAGGTTTATTCTTAGACCGCCGTTAGATGACAAGAAGTTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTACTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCTGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAGCAAGCCCTTGGATACCCCCTTGAGCCCTCCGATAGTTATGGAGACGATAATCCTGCAAAGCAATTTGATACTTTGTTGTACTTGGCGTTTCAGCATCCCTCATGCGAGAGAACAAAGGCCCGACACATAAGGTCGGGGCATTCGAGGCTATTGTTTTTGGGCCAATATGTAATCGAATTGGCGTTAGCAGAGTATTTTCTGCAGCGATATCCTAGGGAATCGCCAGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCACAGTGGATCAAAGCTGCCAGTTTACAGAATTTGATATTCCCATATGACGACATGGATAAGATGGTTAGGAAGGACCGCGAACCACCTGTGAAGAACTGGGATTTATCGGTCAGAAGAGGCATCAATAAGGCATTTGATGAGGAAGTGTACCGGGTCCTTTTCGAGGTGTTTGGAATGGACCCAGATGCAGAGGAATGCGAACCAAGGTTACGCAGGCAACTCGAAGATGTAGATTATGTCTCTGTTGAATTTGAGGACAAAAAGATCAGCTGGCAAGATATGCCTCCAGAAGATGCTCTGTTTGCGCATCCTAGGCTCTTCAGAGCTTGTGTCCCGCCTGGCATGCATCGATTTCGGGGTAATATATGGGATTATGATAGCCGGCCTCAAGTCATGCAAGCACTAGGATACCCTGTACCTGTTACTGATAAAATTCCCGAGATCACAGAAGCGAGAAATATTGAACTCGGACTTGGACTGCAGCTTTGCTTTTTGCACCCATCAAAACACAAGTTTGAGCACCCTCGTTTCTGCTACGAGCGATTAGAATACCTCGGCCAGAAGATCCAGGACATTGTGATGGCGGAGAGACTGTTGATGAAGCATTTAGATGCTCCTGGAAAGTGGTTGCAGGAGAAGCACCGGCGGTTGCTCATGAACAAGTTCTGCGGGCGGTATTTGAGGGAGAAATATCTTCATAAACTTATCGTCTACTCCGAACAAGTTCAAGATGCATACGAGAACAACCGGAGGCTTCGAAACCCAGCCACCACGGCTGTTCAGCAAGCCCTTCATGGACTTTCTTATACAGTTTATGGAAAGCCTGATGTGAGGCGTCTCATGTTTGAGGGGGATAAATCTACACCGATCGGATTGTTTGGCTCTAACTACCCATCCATGTCTAAAGCCCGTGTTTATGCTGATGTCAATGTTTTGCGCCCCAAGGACTATTGGGATTACGAATCTCTTGCCGTTCAATGGGGTGATCAAGACGATTATGAGGTTGTCCGGAAAGTTGGAAGAGGAAAATATAGTGAGGTATTTGAGGGAATAAATGTTAATAACAACGAGCGGTGCATAATCAAGATCCTTAAGCCTGTTAAGAAGAAGAAGATAAAGAGAGAGATAAAAATACTTCAGAACCTCTGTGGGGGTCCAAACATTGTCAAGCTTTTTGATATTGTCAGAGATCAGCATTCGAAAACACCCAGCTTGATTTTTGAGTATGTGAACAGCACAGATTTCAAAGTACTTTATCCAACACTGACTGATTATGACATACGCTACTACATATATGAGCTTTTGAAGGCATTAGATTATTGCCACTCTCAAGGGATAATGCACAGGGATGTCAAACCTCACAACGTTATGATAGACCATGAGTTGCGGAAACTTCGCTTGATTGACTGGGGCCTTGCTGAATTTTATCATCCTGGCAAGGAATATAATGTTCGTGTGGCATCAAGATACTTTAAGGGTCCTGAATTGTTGGTCGATTTGCAAGATTATGATTATTCTTTGGACATGTGGAGCCTTGGTTGCATGTTTGCTGGAATGATTTTTCGCAAGGAACCTTTCTTTTATGGCCATGACAATCATGACCAGCTTTTAAAAATTGCAAAGGTTCTTGGGACAGATGAATTGAATGCATATTTGAACAAGTATCATCTAGAGCTCGATCCTCAACTTGATGCACTTGTTGGGAGGCCATTGATTTTCTTGATAAGCTTCTTCGATATGATCACCAGGACCGGCTTACGGCAAGAGAAGCTATGGCACATCCATATTTCTCCCAAGTCCGGGCTGCTGAAAATAGCAGGATGCGTACACAGTAGAAATACATTATCCCCGGAGTATTTGCATAAACTAAATAGTGATATGGAGGCCTCAACCGACGAAGAATTGGCTCCGTTTGGCTTTGACTTAGGATTTCGATCACGAATTCGTAATCTAGAGAGTGATAAACCTAGCGTTGTTGTTGAAGATTTTGTCGGTGCGGATGAGAACGCAGAATGCGAATTGAAACAGGGCAATTTGACCGGGATCCTTGAATCGAGAGATGAAACTGAGAGTAAATGCGAATGTGTGTTGATTGACTCTGTGAGGATTGTTGAAGATAGATTAGAGAGTGACTCCGATAATACTGGTGGTGATTGCGGCGGTGAGGTTGCAGGAAAGGTGATCGATGAAAGTTCTGTTAGGACCAGGTGTGAAGAAACTGGAATCGGTCCGGATGAGGAAGACGTATGCAAGGACGATGGAGTTGAGGCGTTTGAGAATGATCGGAACAAGGAATCCGGTGGAGTAAGCGAGGGAGGATCGGCGGAGGAGATTGCCGTCGAGGATGACGATTGGGAGGGAATTGAAAGAACTGAATTGGAGAAGTTATTTGAAACCGCAGTAGAGTTTGTGAAGATTCGAGATATCGAGGATCCCAAATTTGGCGGTGAATTGAAGATGCGGCTGAACGGGCTTCACAAGATAGCCATAGAGGGGCCTTGCAGAGAACCACCGCCAATGGCTTTGAAGATCTCTGCTCGAGCCAAATGGTAA

Coding sequence (CDS)

ATGGAACTTTCTTCTTGTTTTGTTAAACTTTCCTCCCCTACTCCTAATTTCTCTTTCTCGTCTTCTTTAACCCCATTTGTTGTAAAAATTCACCCCAATAATCCCAGTTTATCGAACCCCTCTTCTGGGGGTCTGCGTATTTTTGCAGTTGCGGTTGACCCACAACAAGAGCTGCCCAAAAACAACCCTCAGAGACTGCTCAAAGAGCTCGAGGAGCGAAAACGAGCCACTTCTCCGAAGAAAAAGGTTCCCCCAAGAAGGTTTATTCTTAGACCGCCGTTAGATGACAAGAAGTTAGCGGAAAGGTTTCTCAATAGCCCTCAATTAACTCTTAAATCATTCCCATTACTGAGTTCTTGTTTACCATCTTCGCGGCTTAACAATGCTGATAAAACTTGGATGGACGAGTACTTGCTGGAAGCCAAGCAAGCCCTTGGATACCCCCTTGAGCCCTCCGATAGTTATGGAGACGATAATCCTGCAAAGCAATTTGATACTTTGTTGTACTTGGCGTTTCAGCATCCCTCATGCGAGAGAACAAAGGCCCGACACATAAGGTCGGGGCATTCGAGGCTATTGTTTTTGGGCCAATATGTAATCGAATTGGCGTTAGCAGAGTATTTTCTGCAGCGATATCCTAGGGAATCGCCAGGTCCAATGAGGGAGAGGGTTTTTGCGTTAATTGGGAAGAGGAACCTTCCACAGTGGATCAAAGCTGCCAGTTTACAGAATTTGATATTCCCATATGACGACATGGATAAGATGGTTAGGAAGGACCGCGAACCACCTGTGAAGAACTGGGATTTATCGGTCAGAAGAGGCATCAATAAGGCATTTGATGAGGAAGTGTACCGGGTCCTTTTCGAGGTGTTTGGAATGGACCCAGATGCAGAGGAATGCGAACCAAGGTTACGCAGGCAACTCGAAGATGTAGATTATGTCTCTGTTGAATTTGAGGACAAAAAGATCAGCTGGCAAGATATGCCTCCAGAAGATGCTCTGTTTGCGCATCCTAGGCTCTTCAGAGCTTGTGTCCCGCCTGGCATGCATCGATTTCGGGGTAATATATGGGATTATGATAGCCGGCCTCAAGTCATGCAAGCACTAGGATACCCTGTACCTGTTACTGATAAAATTCCCGAGATCACAGAAGCGAGAAATATTGAACTCGGACTTGGACTGCAGCTTTGCTTTTTGCACCCATCAAAACACAAGTTTGAGCACCCTCGTTTCTGCTACGAGCGATTAGAATACCTCGGCCAGAAGATCCAGGACATTGTGATGGCGGAGAGACTGTTGATGAAGCATTTAGATGCTCCTGGAAAGTGGTTGCAGGAGAAGCACCGGCGGTTGCTCATGAACAAGTTCTGCGGGCGGTATTTGAGGGAGAAATATCTTCATAAACTTATCGTCTACTCCGAACAAGTTCAAGATGCATACGAGAACAACCGGAGGCTTCGAAACCCAGCCACCACGGCTGTTCAGCAAGCCCTTCATGGACTTTCTTATACAGTTTATGGAAAGCCTGATGTGAGGCGTCTCATGTTTGAGGGGGATAAATCTACACCGATCGGATTGTTTGGCTCTAACTACCCATCCATGTCTAAAGCCCGTGTTTATGCTGATGTCAATGTTTTGCGCCCCAAGGACTATTGGGATTACGAATCTCTTGCCGTTCAATGGGGTGATCAAGACGATTATGAGGTTGTCCGGAAAGTTGGAAGAGGAAAATATAGTGAGGTATTTGAGGGAATAAATGTTAATAACAACGAGCGGTGCATAATCAAGATCCTTAAGCCTGTTAAGAAGAAGAAGATAAAGAGAGAGATAAAAATACTTCAGAACCTCTGTGGGGGTCCAAACATTGTCAAGCTTTTTGATATTGTCAGAGATCAGCATTCGAAAACACCCAGCTTGATTTTTGAGTATGTGAACAGCACAGATTTCAAAGTACTTTATCCAACACTGACTGATTATGACATACGCTACTACATATATGAGCTTTTGAAGGCATTAGATTATTGCCACTCTCAAGGGATAATGCACAGGGATGTCAAACCTCACAACGTTATGATAGACCATGAGTTGCGGAAACTTCGCTTGATTGACTGGGGCCTTGCTGAATTTTATCATCCTGGCAAGGAATATAATGTTCGTGTGGCATCAAGATACTTTAAGGGTCCTGAATTGTTGGTCGATTTGCAAGATTATGATTATTCTTTGGACATGTGGAGCCTTGGTTGCATGTTTGCTGGAATGATTTTTCGCAAGGAACCTTTCTTTTATGGCCATGACAATCATGACCAGCTTTTAAAAATTGCAAAGGTTCTTGGGACAGATGAATTGAATGCATATTTGAACAAGTATCATCTAGAGCTCGATCCTCAACTTGATGCACTTGTTGGGAGGCCATTGATTTTCTTGATAAGCTTCTTCGATATGATCACCAGGACCGGCTTACGGCAAGAGAAGCTATGGCACATCCATATTTCTCCCAAGTCCGGGCTGCTGAAAATAGCAGGATGCGTACACAGTAGAAATACATTATCCCCGGAGTATTTGCATAAACTAAATAGTGATATGGAGGCCTCAACCGACGAAGAATTGGCTCCGTTTGGCTTTGACTTAGGATTTCGATCACGAATTCGTAATCTAGAGAGTGATAAACCTAGCGTTGTTGTTGAAGATTTTGTCGGTGCGGATGAGAACGCAGAATGCGAATTGAAACAGGGCAATTTGACCGGGATCCTTGAATCGAGAGATGAAACTGAGAGTAAATGCGAATGTGTGTTGATTGACTCTGTGAGGATTGTTGAAGATAGATTAGAGAGTGACTCCGATAATACTGGTGGTGATTGCGGCGGTGAGGTTGCAGGAAAGGTGATCGATGAAAGTTCTGTTAGGACCAGGTGTGAAGAAACTGGAATCGGTCCGGATGAGGAAGACGTATGCAAGGACGATGGAGTTGAGGCGTTTGAGAATGATCGGAACAAGGAATCCGGTGGAGTAAGCGAGGGAGGATCGGCGGAGGAGATTGCCGTCGAGGATGACGATTGGGAGGGAATTGAAAGAACTGAATTGGAGAAGTTATTTGAAACCGCAGTAGAGTTTGTGAAGATTCGAGATATCGAGGATCCCAAATTTGGCGGTGAATTGAAGATGCGGCTGAACGGGCTTCACAAGATAGCCATAGAGGGGCCTTGCAGAGAACCACCGCCAATGGCTTTGAAGATCTCTGCTCGAGCCAAATGGTAA

Protein sequence

MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPKNNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAASLQNLIFPYDDMDKMVRKDREPPVKNWDLSVRRGINKAFDEEVYRVLFEVFGMDPDAEECEPRLRRQLEDVDYVSVEFEDKKISWQDMPPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQVQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFEGDKSTPIGLFGSNYPSMSKARVYADVNVLRPKDYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLLKIAKVLGTDELNAYLNKYHLELDPQLDALVGRPLIFLISFFDMITRTGLRQEKLWHIHISPKSGLLKIAGCVHSRNTLSPEYLHKLNSDMEASTDEELAPFGFDLGFRSRIRNLESDKPSVVVEDFVGADENAECELKQGNLTGILESRDETESKCECVLIDSVRIVEDRLESDSDNTGGDCGGEVAGKVIDESSVRTRCEETGIGPDEEDVCKDDGVEAFENDRNKESGGVSEGGSAEEIAVEDDDWEGIERTELEKLFETAVEFVKIRDIEDPKFGGELKMRLNGLHKIAIEGPCREPPPMALKISARAKW

Homology

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BLAST of CmoCh03G009660 vs. ExPASy Swiss-Prot
Match: Q9SZV0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 821.2 bits (2120), Expect = 1.3e-236
Identity = 400/512 (78.12%), Postives = 444/512 (86.72%), Query Frame = 0


Query: 11  SSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPKNNPQRLLKEL 70
           SS  P  SFSSS++ F  K       L+      LRI A      Q LP+++PQRLLKEL
Sbjct: 17  SSSAPEISFSSSISQFPSK---TQSILTKSRFQNLRICASVTAETQGLPRDSPQRLLKEL 76

Query: 71  EERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNAD 130
            +RK AT PKKKVPP+RFILRPPLDDKKLAERFLNSPQL+LKSFPLLSSCLPSS+LNNAD
Sbjct: 77  AQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLPSSKLNNAD 136

Query: 131 KTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKARHIRSGHS 190
           KTW+DEYLLE KQALGY LEPS+S GDDNPAK FDTLLYLAFQHPSC+R +ARH+++GHS
Sbjct: 137 KTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARARHVKNGHS 196

Query: 191 RLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAASLQNLIFPYD 250
           RL FLGQYV+ELAL E+FLQRYPRESPGPMRERVFALIGKR LP+WIKAASLQNLIFPYD
Sbjct: 197 RLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASLQNLIFPYD 256

Query: 251 DMDKMVRKDREPPVKNWDLSVRRGINKAFD-EEVYRVLFEVFGMDPDAEECEPRLRRQLE 310
           DMDK++RK+REPPVK+   ++   I   F   EVYRVLFEVFGMDPDA+EC+PR RRQLE
Sbjct: 257 DMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADECQPRSRRQLE 316

Query: 311 DVDYVSVEFEDKKISWQDM----PPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQV 370
           DVDYVSVEFE KK+ WQD+    PPEDALFAHPRLFRACVPPGMHRFRGNIWD+DS+P+V
Sbjct: 317 DVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNIWDFDSKPKV 376

Query: 371 MQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLGQKIQD 430
           MQ LGYP+ + D+I EITEARNIELGLGLQLCFLHPSKHKFEHPRFC+ERLEY+GQKIQD
Sbjct: 377 MQTLGYPLTMNDRIKEITEARNIELGLGLQLCFLHPSKHKFEHPRFCFERLEYVGQKIQD 436

Query: 431 IVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQVQDAYENNRR 490
           I MAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREK LH  I+YSE+V D YE+NRR
Sbjct: 437 IAMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEEVHDRYEHNRR 496

Query: 491 LRNPATTAVQQALHGLSYTVYGKPDVRRLMFE 518
           LRNPATTAVQQA+HGL+YT+YGKPDVRRLMFE
Sbjct: 497 LRNPATTAVQQAIHGLAYTIYGKPDVRRLMFE 525

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BLAST of CmoCh03G009660 vs. ExPASy Swiss-Prot
Match: A6YSL1 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=4577 GN=RNC1 PE=1 SV=1)

HSP 1 Score: 747.7 bits (1929), Expect = 1.9e-214
Identity = 368/519 (70.91%), Postives = 427/519 (82.27%), Query Frame = 0


Query: 15  PNFSFSS-SLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVD------PQQELPKNNPQRLL 74
           P  +F + +LTP    +H         SS  +R+ AVA D      P  E P N+P RLL
Sbjct: 4   PAMAFQALTLTPLPFSLH--------SSSRRVRVLAVAADQTPPPAPPSE-PANSPSRLL 63

Query: 75  KELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLN 134
           +EL +RK+A SPKKK PPRRFIL+PPLDD++L  RFL+SPQL+LK+ PLLSSCLPS+ L+
Sbjct: 64  RELAQRKKAVSPKKKHPPRRFILKPPLDDERLTRRFLSSPQLSLKALPLLSSCLPSAPLS 123

Query: 135 NADKTWMDEYLLEAKQALGYPLEPSDSY--GDDNPAKQFDTLLYLAFQH--PSCERTKAR 194
            AD+TWMDEYLLEAKQALGYPL PS++   GDD PA+ FD L YLAFQH  PS ERT+ R
Sbjct: 124 TADRTWMDEYLLEAKQALGYPLAPSETLGEGDDCPARHFDVLFYLAFQHLDPSSERTRMR 183

Query: 195 HIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAASLQ 254
           H+R+GHSRL FLGQYV+ELA  E+FLQRYPRESPGPMRERVFALIGK+ LP+W+KAASL 
Sbjct: 184 HVRNGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKKVLPRWLKAASLH 243

Query: 255 NLIFPYDDMDKMVRKDREPPVKNWDLSVRRGINKAFD-EEVYRVLFEVFGMDPDAEECEP 314
           NL+FPYDD+DKM+RKDREPP K    ++   I   F   EVYRVLFE FGMDPD E C+P
Sbjct: 244 NLVFPYDDLDKMIRKDREPPSKAVFWAIFGAIYLCFGMPEVYRVLFEAFGMDPDDESCQP 303

Query: 315 RLRRQLEDVDYVSVEFEDKKISWQDM----PPEDALFAHPRLFRACVPPGMHRFRGNIWD 374
           +LRRQLEDVDYVSVEFE ++++WQD+    PP DALFAHPRLFRACVPPGMHRFRGNIWD
Sbjct: 304 KLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPPGMHRFRGNIWD 363

Query: 375 YDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEY 434
           +DSRP+VM  LGYP+P+ D+IPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEY
Sbjct: 364 FDSRPKVMTTLGYPLPMNDRIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEY 423

Query: 435 LGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQVQD 494
           +GQKIQD+VMAERLLMKHLDAPG+WL EKHRR LMNK+CGRYLR+K+L   I+Y E VQD
Sbjct: 424 VGQKIQDLVMAERLLMKHLDAPGRWLAEKHRRTLMNKYCGRYLRDKHLQHYIIYGETVQD 483

Query: 495 AYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFE 518
            +E+NRRLRNP+TT+VQQALHGL+Y VYGKPDVRRLMFE
Sbjct: 484 RFEHNRRLRNPSTTSVQQALHGLAYCVYGKPDVRRLMFE 513

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BLAST of CmoCh03G009660 vs. ExPASy Swiss-Prot
Match: Q8S1Z0 (Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RNC1 PE=2 SV=1)

HSP 1 Score: 747.7 bits (1929), Expect = 1.9e-214
Identity = 360/493 (73.02%), Postives = 416/493 (84.38%), Query Frame = 0


Query: 45  LRIFAVAVD---------PQQELPKNNPQRLLKELEERKRATSPKKKVPPRRFILRPPLD 104
           +R+ AVA D              P N+P RLL+EL ERK+A SPKKK PPRRFIL+PPLD
Sbjct: 29  VRVLAVAADHTPPPPPSPSSPPEPANSPSRLLRELAERKKAVSPKKKHPPRRFILKPPLD 88

Query: 105 DKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSY 164
           D++L +RFL+SPQL+LK+ PLLSSCLPS+ L+ AD+TWMDEYLLEAKQALGYPL PS++ 
Sbjct: 89  DERLTQRFLSSPQLSLKALPLLSSCLPSAPLSAADRTWMDEYLLEAKQALGYPLAPSETL 148

Query: 165 GDDN----PAKQFDTLLYLAFQH--PSCERTKARHIRSGHSRLLFLGQYVIELALAEYFL 224
           GD +    PA+ FD LLYLAFQH   SCERT+ RH+RSGHSRL FLGQYV+ELA  E+FL
Sbjct: 149 GDGDDDGCPARHFDVLLYLAFQHLDTSCERTRTRHVRSGHSRLWFLGQYVLELAFCEFFL 208

Query: 225 QRYPRESPGPMRERVFALIGKRNLPQWIKAASLQNLIFPYDDMDKMVRKDREPPVKNWDL 284
           QRYPRESPGPMRERVFALIGKR +P+WIKAASL NL+FPYDD+DKM+RKDREPP K    
Sbjct: 209 QRYPRESPGPMRERVFALIGKRAIPKWIKAASLHNLVFPYDDLDKMIRKDREPPAKAVFW 268

Query: 285 SVRRGINKAFD-EEVYRVLFEVFGMDPDAEECEPRLRRQLEDVDYVSVEFEDKKISWQDM 344
           ++   I   F   EVYRVLFE FGMDP+ E C+P+LRRQLEDVDYVSVEFE ++++WQD+
Sbjct: 269 ALFGAIYLCFGMPEVYRVLFEAFGMDPEDESCQPKLRRQLEDVDYVSVEFEKRQLTWQDV 328

Query: 345 ----PPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQVMQALGYPVPVTDKIPEITE 404
               PP DALFAHPRLFRACVPPGMHRFRGNIWD+D+RP+VM  LGYP+P+ D+IPEITE
Sbjct: 329 AAYRPPPDALFAHPRLFRACVPPGMHRFRGNIWDFDNRPKVMNTLGYPLPMNDRIPEITE 388

Query: 405 ARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLGQKIQDIVMAERLLMKHLDAPGKWL 464
           ARNIELGLGLQLCFLHPSKHKFEHPRFC ERLEY+GQKIQD+VMAERLLMKHLDAPG+WL
Sbjct: 389 ARNIELGLGLQLCFLHPSKHKFEHPRFCLERLEYVGQKIQDLVMAERLLMKHLDAPGRWL 448

Query: 465 QEKHRRLLMNKFCGRYLREKYLHKLIVYSEQVQDAYENNRRLRNPATTAVQQALHGLSYT 518
            EKHRRLLMNK+CGRYLR+K+LH  I+Y E VQD +E+NRRLRNP+TTAVQQA+HGL+Y 
Sbjct: 449 AEKHRRLLMNKYCGRYLRDKHLHHYIIYGESVQDRFEHNRRLRNPSTTAVQQAIHGLAYC 508

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BLAST of CmoCh03G009660 vs. ExPASy Swiss-Prot
Match: Q9AR27 (Casein kinase II subunit alpha-2 OS=Oryza sativa subsp. indica OX=39946 GN=HD6 PE=2 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 2.6e-155
Identity = 258/270 (95.56%), Postives = 267/270 (98.89%), Query Frame = 0


Query: 534 MSKARVYADVNVLRPKDYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNERC 593
           MSKARVYADVNVLRPK+YWDYE+L VQWG+QDDYEVVRKVGRGKYSEVFEGINVNNNE+C
Sbjct: 1   MSKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEKC 60

Query: 594 IIKILKPVKKKKIKREIKILQNLCGGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLY 653
           IIKILKPVKKKKIKREIKILQNLCGGPNIVKL DIVRDQHSKTPSLIFEYVN+TDFKVLY
Sbjct: 61  IIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLY 120

Query: 654 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG 713
           PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG
Sbjct: 121 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG 180

Query: 714 KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLLKI 773
           KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQL+KI
Sbjct: 181 KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKI 240

Query: 774 AKVLGTDELNAYLNKYHLELDPQLDALVGR 804
           AKVLGT+ LNAYLNKYH+ELDPQL+ALVGR
Sbjct: 241 AKVLGTEALNAYLNKYHIELDPQLEALVGR 270

[Close]

BLAST of CmoCh03G009660 vs. ExPASy Swiss-Prot
Match: B6F107 (Casein kinase II subunit alpha-2 OS=Oryza sativa subsp. japonica OX=39947 GN=HD6 PE=3 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 2.6e-155
Identity = 258/270 (95.56%), Postives = 267/270 (98.89%), Query Frame = 0


Query: 534 MSKARVYADVNVLRPKDYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNERC 593
           MSKARVYADVNVLRPK+YWDYE+L VQWG+QDDYEVVRKVGRGKYSEVFEGINVNNNE+C
Sbjct: 1   MSKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEKC 60

Query: 594 IIKILKPVKKKKIKREIKILQNLCGGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLY 653
           IIKILKPVKKKKIKREIKILQNLCGGPNIVKL DIVRDQHSKTPSLIFEYVN+TDFKVLY
Sbjct: 61  IIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLY 120

Query: 654 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG 713
           PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG
Sbjct: 121 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG 180

Query: 714 KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLLKI 773
           KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQL+KI
Sbjct: 181 KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKI 240

Query: 774 AKVLGTDELNAYLNKYHLELDPQLDALVGR 804
           AKVLGT+ LNAYLNKYH+ELDPQL+ALVGR
Sbjct: 241 AKVLGTEALNAYLNKYHIELDPQLEALVGR 270

[Close]

BLAST of CmoCh03G009660 vs. ExPASy TrEMBL
Match: A0A164W1N4 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021470 PE=4 SV=1)

HSP 1 Score: 1283.9 bits (3321), Expect = 0.0e+00
Identity = 649/901 (72.03%), Postives = 711/901 (78.91%), Query Frame = 0


Query: 1   MELSSCFVKLSS-PTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELP 60
           MELSS F  L++  TP+FSFSSSL+PF  + H  NP  SNPSS    +FAVAV+P QELP
Sbjct: 1   MELSSPFKPLANHHTPDFSFSSSLSPFPHQTHLKNPIFSNPSSSKFHLFAVAVNP-QELP 60

Query: 61  KNNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSS 120
            N+PQRLL+EL ERK+  SPK+KVPP+RFILRPPLDDK+LAERFLNSPQL+LKSFPLLSS
Sbjct: 61  PNSPQRLLRELAERKKVVSPKRKVPPKRFILRPPLDDKRLAERFLNSPQLSLKSFPLLSS 120

Query: 121 CLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCER 180
           CLPS+RLNNADKTW+DEYLLEAKQALGYPLEPSD+YGDDNPAKQFDTLLYLAFQHP CER
Sbjct: 121 CLPSTRLNNADKTWIDEYLLEAKQALGYPLEPSDTYGDDNPAKQFDTLLYLAFQHPHCER 180

Query: 181 TKARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKA 240
           T ARHIRS HSRL FLGQYV+EL LAE+FLQRYPRESPGPMRERV+ALIGKR LP+WIKA
Sbjct: 181 TNARHIRSAHSRLGFLGQYVLELGLAEFFLQRYPRESPGPMRERVYALIGKRYLPKWIKA 240

Query: 241 ASLQNLIFPYDDMDKMVRKDREPPVKNWDLSVRRGINKAFD-EEVYRVLFEVFGMDPDAE 300
           ASLQNL+FP+D+MD++VRKDREPPVK+   ++   +   F   EVYRVLFEVFGMDP+ E
Sbjct: 241 ASLQNLVFPFDNMDRLVRKDREPPVKSVFWALFGAVYLCFGMPEVYRVLFEVFGMDPEDE 300

Query: 301 ECEPRLRRQLEDVDYVSVEFEDKKISWQDMPPEDALFAHPRLFRACVPPGMHRFRGNIWD 360
           EC+P+LRRQLEDVDYVSVEFE KKISWQD+    A     RLFRACVPPGMHRFRGNIWD
Sbjct: 301 ECQPKLRRQLEDVDYVSVEFEAKKISWQDVAAYKA-----RLFRACVPPGMHRFRGNIWD 360

Query: 361 YDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEY 420
           YDSRP VM+ LGYP+ + D+IPEITEARNIELGLGLQL FLHPSKHKFEHPRFCYERLEY
Sbjct: 361 YDSRPHVMEKLGYPLAMKDRIPEITEARNIELGLGLQLSFLHPSKHKFEHPRFCYERLEY 420

Query: 421 LGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQVQD 480
           +GQKIQD+VMAERLLMKHLDAPG+WLQE+HRRLLMNKFCG+YLREK LH+ I+YS++VQD
Sbjct: 421 VGQKIQDLVMAERLLMKHLDAPGRWLQERHRRLLMNKFCGKYLREKNLHRFIIYSDEVQD 480

Query: 481 AYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFEGD--------KSTPIGL---- 540
           +YE+NRRLRNPATT+VQQA+HGLSYT+YGKPDVRRLMFE           +TP G+    
Sbjct: 481 SYEHNRRLRNPATTSVQQAIHGLSYTIYGKPDVRRLMFEKTLEQMFFKASATPKGVNCTL 540

Query: 541 ------------------------------------------------------------ 600
                                                                       
Sbjct: 541 YDQLLKSRLPLGAIFKEKFTLSVIVSPCTNLRNCTINDHALQNSSKICVINSKMRRAEAE 600

Query: 601 --------------------------FGSNYPS--------------------------M 660
                                       S +PS                          M
Sbjct: 601 QASNQTISVEFQEGMIGMIKGLQPPPLISAFPSNGSDSDSDSSEICPDSGPCNNFDSFVM 660

Query: 661 SKARVYADVNVLRPKDYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNERCI 720
           SKARVY D+NV+RP++YWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNN+ERCI
Sbjct: 661 SKARVYTDINVVRPREYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNSERCI 720

Query: 721 IKILKPVKKKKIKREIKILQNLCGGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLYP 776
           IKILKPVKKKKIKREIKILQNLCGGPNIVKL DIVRDQHSKTPSLIFEYVNSTDFKVLYP
Sbjct: 721 IKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYP 780

[Close]

BLAST of CmoCh03G009660 vs. ExPASy TrEMBL
Match: A0A2U1NY53 (Ribonuclease III family protein OS=Artemisia annua OX=35608 GN=CTI12_AA215100 PE=4 SV=1)

HSP 1 Score: 1254.6 bits (3245), Expect = 0.0e+00
Identity = 618/846 (73.05%), Postives = 705/846 (83.33%), Query Frame = 0


Query: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60
           M+LSS F K S+ T       SLTPF +K H  N     P S  +     +   Q++LP+
Sbjct: 1   MDLSSPF-KPSNTT--IFHHPSLTPFPLKTHLQNLKFRKPFS-PITAITNSQQEQEQLPQ 60

Query: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           N+PQRLLKEL +R++  +P K++PP+RFIL+PPLDD KLA+RFLNSPQL+LK FPLLSSC
Sbjct: 61  NSPQRLLKELSQRQKIINPNKRLPPKRFILKPPLDDAKLAQRFLNSPQLSLKQFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPS +LNNADKTW+DE+LLEAKQALGYPLEPS++  DDNPAKQFD LLYLAF HP CERT
Sbjct: 121 LPSMKLNNADKTWVDEFLLEAKQALGYPLEPSENLSDDNPAKQFDVLLYLAFGHPHCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240
            ARH+RSGHSRL FLGQYV+ELA+ E+F+QRYPRESPGPMRERV+ LIGK+ LP+W+KAA
Sbjct: 181 NARHVRSGHSRLGFLGQYVLELAMCEFFMQRYPRESPGPMRERVYGLIGKKYLPKWVKAA 240

Query: 241 SLQNLIFPYDDMDKMVRKDREPPVKNWDLSVRRGINKAFD-EEVYRVLFEVFGMDPDAEE 300
           SL NLIF +DDMDK++RK+REPPVK+   ++   I   +   EVYRVLFEVFG+DP+ EE
Sbjct: 241 SLHNLIFQFDDMDKLIRKEREPPVKSVVWALFGAIYLCYGMPEVYRVLFEVFGLDPEDEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMPPEDALFAHPRLFRACVPPGMHRFRGNIWDY 360
           C+P+LRRQLEDVDYVS EFE KK+SWQ+ PPEDALFAHPRLFRACVPPGMHRFRGNIWDY
Sbjct: 301 CQPKLRRQLEDVDYVSAEFEGKKLSWQE-PPEDALFAHPRLFRACVPPGMHRFRGNIWDY 360

Query: 361 DSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYL 420
           D+RPQVM  LGYP+ V D+IPEIT ARNIELGLGLQL FLHPSKHKFEHPRFC+ERLEY+
Sbjct: 361 DARPQVMNTLGYPLKVKDRIPEITNARNIELGLGLQLAFLHPSKHKFEHPRFCFERLEYV 420

Query: 421 GQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQVQDA 480
           GQKIQD+VMAERLL+KH+DAPGKWLQEKHRR+L+NKFCG+YLREK+LH+ I+YSE+VQD+
Sbjct: 421 GQKIQDLVMAERLLIKHIDAPGKWLQEKHRRILLNKFCGKYLREKHLHRFIIYSEEVQDS 480

Query: 481 YENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFE---GDKSTP--------IGLFG 540
           YE NRRLRNPATT+VQQA+HGL+YTVYGKPDVRRLMFE    +++ P        +GL G
Sbjct: 481 YEQNRRLRNPATTSVQQAIHGLAYTVYGKPDVRRLMFEVFDFEQTQPKAFITINKMGLLG 540

Query: 541 -----------------SNYPSMSKARVYADVNVLRPKDYWDYESLAVQWG--------- 600
                            S++       +Y +  + RPK + D   + V+           
Sbjct: 541 PKHRVGILKYRSQFMLLSHFILTQSFEIY-NACITRPKGHIDRHIIDVKGSYMIPQMHVR 600

Query: 601 -----DQDDYEVVRKVGRGKYSEVFEGINVNNNERCIIKILKPVKKKKIKREIKILQNLC 660
                DQDDYEVVRKVGRGKYSEVFEGINVN+NE+C+IKILKPVKKKKIKREIKILQNLC
Sbjct: 601 VPFQCDQDDYEVVRKVGRGKYSEVFEGINVNSNEKCVIKILKPVKKKKIKREIKILQNLC 660

Query: 661 GGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHS 720
           GGPN++KL DIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHS
Sbjct: 661 GGPNVIKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHS 720

Query: 721 QGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDY 780
           QGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDY
Sbjct: 721 QGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDY 780

Query: 781 DYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLLKIAKVLGTDELNAYLNKYHLELDPQL 804
           DYSLDMWSLGCMFAGMIFRKEPFFYGHDN DQL+KIA+VLGTDELNAYLNKY LEL+PQL
Sbjct: 781 DYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIARVLGTDELNAYLNKYQLELEPQL 840

[Close]

BLAST of CmoCh03G009660 vs. ExPASy TrEMBL
Match: A0A4S4E9Q2 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017340 PE=4 SV=1)

HSP 1 Score: 1157.5 bits (2993), Expect = 0.0e+00
Identity = 610/974 (62.63%), Postives = 678/974 (69.61%), Query Frame = 0


Query: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60
           MEL S F     P P+ SFSSS +PF  + H   P +S P+S   RI AVA+DP QELP+
Sbjct: 1   MELCSPF--KPHPRPDLSFSSSFSPFPFQTHLKTPQISTPTSPKFRILAVALDP-QELPQ 60

Query: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           N+PQRLLKEL ERK+  SPKK++PP+RFIL+PPLDDK+LAERFLNSPQL+LK+FPLLSSC
Sbjct: 61  NSPQRLLKELAERKKVVSPKKRIPPKRFILKPPLDDKRLAERFLNSPQLSLKAFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTW++EYLLEAKQALGYPLEPSD +GDDNPAKQFDTLLYLAFQHP CER 
Sbjct: 121 LPSSRLNNADKTWIEEYLLEAKQALGYPLEPSDRFGDDNPAKQFDTLLYLAFQHPYCERA 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240
           K RH+RSGHSRL FLGQYV+ELA+AE+FLQRYPRESPGPMRERV+ALIGKR LPQWIKAA
Sbjct: 181 KTRHVRSGHSRLWFLGQYVLELAMAEFFLQRYPRESPGPMRERVYALIGKRYLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKMVRKDREPPVKNWDLSVRRGINKAFD-EEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYD+MDK++RKDREPPVK    ++   I   F   EVYRVLFEVFGMDP+AEE
Sbjct: 241 SLQNLIFPYDNMDKLIRKDREPPVKAVFWALFGAIYLCFGMPEVYRVLFEVFGMDPEAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDM-------PPEDALFAHPRLFRACVPPGMHRF 360
           C+P+LRRQLEDVDYVSVEF+ +K++WQD+       PPEDALFAHPRLFRACVPPGMHRF
Sbjct: 301 CQPKLRRQLEDVDYVSVEFDGRKLNWQDVAAYKASSPPEDALFAHPRLFRACVPPGMHRF 360

Query: 361 RGNIWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFC 420
           RGNIWDYDS+PQVMQ LGYP+ +TD+IPEIT+ARNIELGLGL                  
Sbjct: 361 RGNIWDYDSKPQVMQTLGYPLIMTDRIPEITQARNIELGLGL------------------ 420

Query: 421 YERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVY 480
                      QD+VMAERLLMKHLDAPG+WLQEKHRR+LMNKFCG++LREKYLH+ I+Y
Sbjct: 421 -----------QDLVMAERLLMKHLDAPGRWLQEKHRRILMNKFCGKFLREKYLHRFIIY 480

Query: 481 SEQVQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFE--------------- 540
           SEQVQDAYE+NRRLRNPATT+VQQA+HGLSYTVYGKPDVRRLMFE               
Sbjct: 481 SEQVQDAYEHNRRLRNPATTSVQQAIHGLSYTVYGKPDVRRLMFEHWLMDVVEESDVAHS 540

Query: 541 ------------------------------------------------------------ 600
                                                                       
Sbjct: 541 EKLIVASDHNPPHRPLKIKSTCPSESVTGGREGYGGYLWWSKSHQQHMKDVHYLSSLLFR 600

Query: 601 ------------------------------GDKSTPIGLFGSNYPSMSKARVYADVNVLR 660
                                            STPI +  +N  +MSKARVY+DVNVLR
Sbjct: 601 FSLVCALVALRAPVAQPPNLLPSCPSLLIHHSLSTPIIITNNNDAAMSKARVYSDVNVLR 660

Query: 661 PKDYWDYESLAVQWG--------------------------------------------- 720
           P+DYWDYES  VQWG                                             
Sbjct: 661 PRDYWDYESHTVQWGVLKTAPKCAPKPKARRGTALRLMHSEVRRHRGGAAKAMRRALLAL 720

Query: 721 -------------DQDDYEVVRKVGRGKYSEVFEGINVNNNERCIIKILKPVKKKKIKRE 780
                        DQDDYEVVRKVGRGKYSEVFEGINVNNNERC+IKILKPVKKKK++  
Sbjct: 721 CVSSTATAHLVLVDQDDYEVVRKVGRGKYSEVFEGINVNNNERCVIKILKPVKKKKVQLS 780

Query: 781 IKILQNLCGGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELL 804
           +       G  N++ L      +    P +   +V      V      DYDIRYYIYELL
Sbjct: 781 L-------GAINLLGL------RLRALPEICPIHVEEA-LCVGLEISQDYDIRYYIYELL 840

[Close]

BLAST of CmoCh03G009660 vs. ExPASy TrEMBL
Match: A0A6J1GEC3 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453180 PE=4 SV=1)

HSP 1 Score: 1016.9 bits (2628), Expect = 6.2e-293
Identity = 503/522 (96.36%), Postives = 506/522 (96.93%), Query Frame = 0


Query: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60
           MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKMVRKDREPPVKNWDLSVRRGINKAFD-EEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKMVRKDREPPVK+   ++   I   F   EVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDM----PPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKKISWQDM    PPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480
           LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFE 518
           VQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFE
Sbjct: 481 VQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFE 522

[Close]

BLAST of CmoCh03G009660 vs. ExPASy TrEMBL
Match: A0A6J1IRK8 (ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477828 PE=4 SV=1)

HSP 1 Score: 1008.1 bits (2605), Expect = 2.9e-290
Identity = 498/522 (95.40%), Postives = 504/522 (96.55%), Query Frame = 0


Query: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60
           MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSG LRIFAVAVDP+QELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGSLRIFAVAVDPRQELPK 60

Query: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWM+EYLLEAKQALGYPLEP DSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMEEYLLEAKQALGYPLEPFDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKMVRKDREPPVKNWDLSVRRGINKAFD-EEVYRVLFEVFGMDPDAEE 300
           SLQNLIFPYDDMDKMVRKDREPPVK+   ++   I   F   EVYRVLFEVFGMDPDAEE
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDAEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDM----PPEDALFAHPRLFRACVPPGMHRFRGN 360
           CEPRLRRQLEDVDYVSVEFEDKKISWQDM    PPEDALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMVAYKPPEDALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER
Sbjct: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480
           LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ
Sbjct: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFE 518
           VQDAYENNRRLRNPATTAVQQ+LHGLSYTVYGKPDVRRLMFE
Sbjct: 481 VQDAYENNRRLRNPATTAVQQSLHGLSYTVYGKPDVRRLMFE 522

[Close]

BLAST of CmoCh03G009660 vs. NCBI nr
Match: KAG7034304.1 (Ribonuclease III domain-containing protein RNC1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1630.9 bits (4222), Expect = 0.0e+00
Identity = 802/869 (92.29%), Postives = 803/869 (92.41%), Query Frame = 0


Query: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60
           MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK
Sbjct: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60

Query: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC
Sbjct: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT
Sbjct: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240
           KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA
Sbjct: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240

Query: 241 SLQNLIFPYDDMDKMVRKDREPPVKNWDLSVRRGINKAFDEEVYRVLFEVFGMDPDAEEC 300
           SLQNLIFPYDDMDKMVRKDREPPVKNWDLSVRRGINKAFDEEVYRVLFEVFGMDPDAEEC
Sbjct: 241 SLQNLIFPYDDMDKMVRKDREPPVKNWDLSVRRGINKAFDEEVYRVLFEVFGMDPDAEEC 300

Query: 301 EPRLRRQLEDVDYVSVEFEDKKISWQDMPPEDALFAHPRLFRACVPPGMHRFRGNIWDYD 360
           EPRLRRQLEDVDYVSVEFEDKKISWQDMPPEDALFAHPRLFR+CVPPGMHRFRGNIWDYD
Sbjct: 301 EPRLRRQLEDVDYVSVEFEDKKISWQDMPPEDALFAHPRLFRSCVPPGMHRFRGNIWDYD 360

Query: 361 SRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLG 420
           SRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLG
Sbjct: 361 SRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLG 420

Query: 421 QKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQVQDAY 480
           QKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQVQDAY
Sbjct: 421 QKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQVQDAY 480

Query: 481 ENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFE----------------------- 540
           ENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFE                       
Sbjct: 481 ENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFETWCFCEAQAFSHGLVLRHMNHVP 540

Query: 541 -------------------------------------------GDKSTPIGLFGSNYPSM 600
                                                      GDKSTPIGLFGSNYPSM
Sbjct: 541 IRLLIVCAVFSLPFPVVHSPSLRSPPLPPPSDCSFFNSVGVIQGDKSTPIGLFGSNYPSM 600

Query: 601 SKARVYADVNVLRPKDYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNERCI 660
           SKARVYADVNVLRPKDYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNERCI
Sbjct: 601 SKARVYADVNVLRPKDYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNERCI 660

Query: 661 IKILKPVKKKKIKREIKILQNLCGGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLYP 720
           IKILKPVKKKKIKREIKILQNLCGGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLYP
Sbjct: 661 IKILKPVKKKKIKREIKILQNLCGGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLYP 720

Query: 721 TLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGK 780
           TLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGK
Sbjct: 721 TLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGK 780

Query: 781 EYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLLKIA 804
           EYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLLKIA
Sbjct: 781 EYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLLKIA 840

[Close]

BLAST of CmoCh03G009660 vs. NCBI nr
Match: KAF3440849.1 (hypothetical protein FNV43_RR19135 [Rhamnella rubrinervis])

HSP 1 Score: 1375.9 bits (3560), Expect = 0.0e+00
Identity = 689/928 (74.25%), Postives = 743/928 (80.06%), Query Frame = 0


Query: 1   MELSSCFVKLSSP-----TPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQ 60
           MELSS FV L  P       N+SFSS+ +   ++I  N+   +NP+S   RI AVAVDPQ
Sbjct: 1   MELSSSFVHLHKPCSSPACTNYSFSSTFSSCPIQIRLNSHRFTNPTSQNFRILAVAVDPQ 60

Query: 61  QELPKNNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFP 120
            ELPKN+PQRLLKEL ERKRATSPKKKVPP+RFILRPPLDD KL +RFLNSPQL+LKSFP
Sbjct: 61  HELPKNSPQRLLKELAERKRATSPKKKVPPKRFILRPPLDDSKLTQRFLNSPQLSLKSFP 120

Query: 121 LLSSCLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHP 180
           LLSSCLPSSRLNNADK W+DEYLLEAKQALGYPLEPSD +GDDNPAKQFDTLLYLAFQHP
Sbjct: 121 LLSSCLPSSRLNNADKIWIDEYLLEAKQALGYPLEPSDMFGDDNPAKQFDTLLYLAFQHP 180

Query: 181 SCERTKARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQ 240
           SCERT ARH+RSGHSRL FLGQYV+ELALAE+FLQRYPRE PGPMRERVFA IGKRNLP+
Sbjct: 181 SCERTNARHVRSGHSRLCFLGQYVLELALAEFFLQRYPREPPGPMRERVFAFIGKRNLPK 240

Query: 241 WIKAASLQNLIFPYDDMDKMVRKDREPPVKNWDLSVRRGINKAFD-EEVYRVLFEVFGMD 300
           WIKAASLQNLIFPYDD+DKM+RK+REPPVK+   ++   I   F   EVYRVLFEVFGMD
Sbjct: 241 WIKAASLQNLIFPYDDIDKMIRKNREPPVKSVFWALFAAIYLCFGMPEVYRVLFEVFGMD 300

Query: 301 PDAEECEPRLRRQLEDVDYVSVEFEDKKISWQDM----PPEDALFAHPRLFRACVPPGMH 360
           P++E+C+PRLRRQLEDVDYVSVEFE   +SWQD+    PPEDALFA PRLFRACVPPGMH
Sbjct: 301 PESEDCQPRLRRQLEDVDYVSVEFEGNNLSWQDVAAYRPPEDALFALPRLFRACVPPGMH 360

Query: 361 RFRGNIWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPR 420
           RFRGN+WDY+ RP VM+ALGYP+ + D+IP+ITEARNIELGLGLQLCFLHPSK+KFEHPR
Sbjct: 361 RFRGNVWDYNCRPNVMKALGYPLEMRDRIPDITEARNIELGLGLQLCFLHPSKYKFEHPR 420

Query: 421 FCYERLEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLI 480
           FCYERLEYLGQKIQD+VMAERLLMKHLDAPG+W+QE+HRRLLMNKFCGRYLREK L +LI
Sbjct: 421 FCYERLEYLGQKIQDLVMAERLLMKHLDAPGRWIQERHRRLLMNKFCGRYLREKRLQQLI 480

Query: 481 VYSEQVQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFE------------- 540
           +YSE+VQD YE+NRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFE             
Sbjct: 481 IYSEEVQDKYEHNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFEVFDFEQIQPKAVC 540

Query: 541 --GDK------------------------------------------------------- 600
             G +                                                       
Sbjct: 541 LYGSRILTPEQRGLERKQKQTSQTLEDAELIGVTNQRETHVNGVAVRHMKDTHKPALILR 600

Query: 601 ---------------------------------------------STPIGLFGSNYPSMS 660
                                                        + P  +FGSN  +MS
Sbjct: 601 ILIVCTLVVSRAPVAYLPNLRLPFLPNPPNYITTSFVNRDNKVRETRPSEIFGSNLLAMS 660

Query: 661 KARVYADVNVLRPKDYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNERCII 720
           KARVY DVNVLRPK+YWDYESL VQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNERCII
Sbjct: 661 KARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNERCII 720

Query: 721 KILKPVKKKKIKREIKILQNLCGGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLYPT 780
           KILKPVKKKKIKREIKILQNLCGGPN+VKL DIVRDQHSKTPSLIFEYVNSTDFKVLYPT
Sbjct: 721 KILKPVKKKKIKREIKILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPT 780

Query: 781 LTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKE 804
           LTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKE
Sbjct: 781 LTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKE 840

[Close]

BLAST of CmoCh03G009660 vs. NCBI nr
Match: GFP96100.1 (casein kinase ii subunit alpha-1 [Phtheirospermum japonicum])

HSP 1 Score: 1327.8 bits (3435), Expect = 0.0e+00
Identity = 645/840 (76.79%), Postives = 729/840 (86.79%), Query Frame = 0


Query: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60
           MEL S F   S   P+ SFSSS++ F  + H   P +    S    + +VAVDP +ELP+
Sbjct: 1   MELYSSF--KSHFKPDISFSSSISSFPYQAHLKTPKI----SPNFHVLSVAVDP-KELPQ 60

Query: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           N+PQRLLKEL ERK+  SPKK+ PP+RFIL+PPLDD +LAERFLNSPQL+LKSFPLLSSC
Sbjct: 61  NSPQRLLKELAERKKTVSPKKRAPPKRFILKPPLDDARLAERFLNSPQLSLKSFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPSSRLNNAD+TW+DE+LLEAKQALGYPLEPS++YG+DNPAKQFDTLLYLAFQHP CERT
Sbjct: 121 LPSSRLNNADRTWIDEFLLEAKQALGYPLEPSENYGNDNPAKQFDTLLYLAFQHPHCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240
            ARH+RSGHSRL FLG+YV+E+AL E+FLQRYPRESPGPMRERV+ALIGKR LP+WIK A
Sbjct: 181 NARHVRSGHSRLSFLGEYVLEMALCEFFLQRYPRESPGPMRERVYALIGKRYLPRWIKGA 240

Query: 241 SLQNLIFPYDDMDKMVRKDREPPVKNWDLSVRRGINKAFD-EEVYRVLFEVFGMDPDAEE 300
            LQNL+F YDDMDK++RKDREPPVK+   ++   I   F   EVYR+LFEVFGMDP+AE+
Sbjct: 241 GLQNLVFQYDDMDKLIRKDREPPVKSVFWALFGAIYLCFGMPEVYRLLFEVFGMDPEAED 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMPP----EDALFAHPRLFRACVPPGMHRFRGN 360
           C+P+LRRQLEDVDYVSVEF+++K+SWQD+       +ALFAHPRLFRACVPPGMHRFRGN
Sbjct: 301 CQPKLRRQLEDVDYVSVEFDNQKLSWQDVAAYKAITNALFAHPRLFRACVPPGMHRFRGN 360

Query: 361 IWDYDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYER 420
           IWDYDSRPQVM+ LGYP+ + D+IPEIT+ARNIELGLGLQLCF+HPS HKFEHPRFC+ER
Sbjct: 361 IWDYDSRPQVMRTLGYPLSMKDRIPEITQARNIELGLGLQLCFMHPSVHKFEHPRFCFER 420

Query: 421 LEYLGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQ 480
           LEY+GQKIQD+VMAERLLMKHLDAPG+WLQEKHRRLLMNKFCG+YLREKYLH+ I+YS++
Sbjct: 421 LEYVGQKIQDLVMAERLLMKHLDAPGRWLQEKHRRLLMNKFCGKYLREKYLHRFIIYSDE 480

Query: 481 VQDAYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFE---GDKSTPIGLF----- 540
           VQDAYE+NRRLRNPATT+VQQA+HGLSY VYGKPDVRRLMFE    ++  P  L      
Sbjct: 481 VQDAYEHNRRLRNPATTSVQQAIHGLSYAVYGKPDVRRLMFEVFDFEQIQPKALLSVSAL 540

Query: 541 ----------GSNYPSMSKARVYADVNVLRPKDYWDYESLAVQWGDQDDYEVVRKVGRGK 600
                     G     MSK+RVYA++NV+RP++YWDYE+L VQWG+QDDYE+VRKVGRGK
Sbjct: 541 ITTEKANCADGDLRLGMSKSRVYAEINVVRPREYWDYENLTVQWGEQDDYEIVRKVGRGK 600

Query: 601 YSEVFEGINVNNNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLFDIVRDQHSKTP 660
           YSEVFEG+NVNNNERCIIKILKPVKKKKIKREIKILQNL GG NIVKL DIVRDQHSKTP
Sbjct: 601 YSEVFEGVNVNNNERCIIKILKPVKKKKIKREIKILQNLRGGTNIVKLIDIVRDQHSKTP 660

Query: 661 SLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELR 720
           SLIFE+VNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELR
Sbjct: 661 SLIFEFVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELR 720

Query: 721 KLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRK 780
           KLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYD+SLD+WSLGCMFAGMIFRK
Sbjct: 721 KLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDFSLDLWSLGCMFAGMIFRK 780

Query: 781 EPFFYGHDNHDQLLKIAKVLGTDELNAYLNKYHLELDPQLDALVGRPLIFLISFFDMITR 818
           EPFFYGHDN DQL+KIAKVLGTDELNAYL+KYHL+LDPQL+AL        I F D + R
Sbjct: 781 EPFFYGHDNQDQLVKIAKVLGTDELNAYLHKYHLDLDPQLEALA-------IDFLDKLLR 826

[Close]

BLAST of CmoCh03G009660 vs. NCBI nr
Match: KZM91165.1 (hypothetical protein DCAR_021470 [Daucus carota subsp. sativus])

HSP 1 Score: 1283.9 bits (3321), Expect = 0.0e+00
Identity = 649/901 (72.03%), Postives = 711/901 (78.91%), Query Frame = 0


Query: 1   MELSSCFVKLSS-PTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELP 60
           MELSS F  L++  TP+FSFSSSL+PF  + H  NP  SNPSS    +FAVAV+P QELP
Sbjct: 1   MELSSPFKPLANHHTPDFSFSSSLSPFPHQTHLKNPIFSNPSSSKFHLFAVAVNP-QELP 60

Query: 61  KNNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSS 120
            N+PQRLL+EL ERK+  SPK+KVPP+RFILRPPLDDK+LAERFLNSPQL+LKSFPLLSS
Sbjct: 61  PNSPQRLLRELAERKKVVSPKRKVPPKRFILRPPLDDKRLAERFLNSPQLSLKSFPLLSS 120

Query: 121 CLPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCER 180
           CLPS+RLNNADKTW+DEYLLEAKQALGYPLEPSD+YGDDNPAKQFDTLLYLAFQHP CER
Sbjct: 121 CLPSTRLNNADKTWIDEYLLEAKQALGYPLEPSDTYGDDNPAKQFDTLLYLAFQHPHCER 180

Query: 181 TKARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKA 240
           T ARHIRS HSRL FLGQYV+EL LAE+FLQRYPRESPGPMRERV+ALIGKR LP+WIKA
Sbjct: 181 TNARHIRSAHSRLGFLGQYVLELGLAEFFLQRYPRESPGPMRERVYALIGKRYLPKWIKA 240

Query: 241 ASLQNLIFPYDDMDKMVRKDREPPVKNWDLSVRRGINKAFD-EEVYRVLFEVFGMDPDAE 300
           ASLQNL+FP+D+MD++VRKDREPPVK+   ++   +   F   EVYRVLFEVFGMDP+ E
Sbjct: 241 ASLQNLVFPFDNMDRLVRKDREPPVKSVFWALFGAVYLCFGMPEVYRVLFEVFGMDPEDE 300

Query: 301 ECEPRLRRQLEDVDYVSVEFEDKKISWQDMPPEDALFAHPRLFRACVPPGMHRFRGNIWD 360
           EC+P+LRRQLEDVDYVSVEFE KKISWQD+    A     RLFRACVPPGMHRFRGNIWD
Sbjct: 301 ECQPKLRRQLEDVDYVSVEFEAKKISWQDVAAYKA-----RLFRACVPPGMHRFRGNIWD 360

Query: 361 YDSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEY 420
           YDSRP VM+ LGYP+ + D+IPEITEARNIELGLGLQL FLHPSKHKFEHPRFCYERLEY
Sbjct: 361 YDSRPHVMEKLGYPLAMKDRIPEITEARNIELGLGLQLSFLHPSKHKFEHPRFCYERLEY 420

Query: 421 LGQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQVQD 480
           +GQKIQD+VMAERLLMKHLDAPG+WLQE+HRRLLMNKFCG+YLREK LH+ I+YS++VQD
Sbjct: 421 VGQKIQDLVMAERLLMKHLDAPGRWLQERHRRLLMNKFCGKYLREKNLHRFIIYSDEVQD 480

Query: 481 AYENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFEGD--------KSTPIGL---- 540
           +YE+NRRLRNPATT+VQQA+HGLSYT+YGKPDVRRLMFE           +TP G+    
Sbjct: 481 SYEHNRRLRNPATTSVQQAIHGLSYTIYGKPDVRRLMFEKTLEQMFFKASATPKGVNCTL 540

Query: 541 ------------------------------------------------------------ 600
                                                                       
Sbjct: 541 YDQLLKSRLPLGAIFKEKFTLSVIVSPCTNLRNCTINDHALQNSSKICVINSKMRRAEAE 600

Query: 601 --------------------------FGSNYPS--------------------------M 660
                                       S +PS                          M
Sbjct: 601 QASNQTISVEFQEGMIGMIKGLQPPPLISAFPSNGSDSDSDSSEICPDSGPCNNFDSFVM 660

Query: 661 SKARVYADVNVLRPKDYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNERCI 720
           SKARVY D+NV+RP++YWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNN+ERCI
Sbjct: 661 SKARVYTDINVVRPREYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNSERCI 720

Query: 721 IKILKPVKKKKIKREIKILQNLCGGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLYP 776
           IKILKPVKKKKIKREIKILQNLCGGPNIVKL DIVRDQHSKTPSLIFEYVNSTDFKVLYP
Sbjct: 721 IKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYP 780

[Close]

BLAST of CmoCh03G009660 vs. NCBI nr
Match: PWA78431.1 (ribonuclease III family protein [Artemisia annua])

HSP 1 Score: 1254.6 bits (3245), Expect = 0.0e+00
Identity = 618/846 (73.05%), Postives = 705/846 (83.33%), Query Frame = 0


Query: 1   MELSSCFVKLSSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPK 60
           M+LSS F K S+ T       SLTPF +K H  N     P S  +     +   Q++LP+
Sbjct: 1   MDLSSPF-KPSNTT--IFHHPSLTPFPLKTHLQNLKFRKPFS-PITAITNSQQEQEQLPQ 60

Query: 61  NNPQRLLKELEERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSC 120
           N+PQRLLKEL +R++  +P K++PP+RFIL+PPLDD KLA+RFLNSPQL+LK FPLLSSC
Sbjct: 61  NSPQRLLKELSQRQKIINPNKRLPPKRFILKPPLDDAKLAQRFLNSPQLSLKQFPLLSSC 120

Query: 121 LPSSRLNNADKTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERT 180
           LPS +LNNADKTW+DE+LLEAKQALGYPLEPS++  DDNPAKQFD LLYLAF HP CERT
Sbjct: 121 LPSMKLNNADKTWVDEFLLEAKQALGYPLEPSENLSDDNPAKQFDVLLYLAFGHPHCERT 180

Query: 181 KARHIRSGHSRLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAA 240
            ARH+RSGHSRL FLGQYV+ELA+ E+F+QRYPRESPGPMRERV+ LIGK+ LP+W+KAA
Sbjct: 181 NARHVRSGHSRLGFLGQYVLELAMCEFFMQRYPRESPGPMRERVYGLIGKKYLPKWVKAA 240

Query: 241 SLQNLIFPYDDMDKMVRKDREPPVKNWDLSVRRGINKAFD-EEVYRVLFEVFGMDPDAEE 300
           SL NLIF +DDMDK++RK+REPPVK+   ++   I   +   EVYRVLFEVFG+DP+ EE
Sbjct: 241 SLHNLIFQFDDMDKLIRKEREPPVKSVVWALFGAIYLCYGMPEVYRVLFEVFGLDPEDEE 300

Query: 301 CEPRLRRQLEDVDYVSVEFEDKKISWQDMPPEDALFAHPRLFRACVPPGMHRFRGNIWDY 360
           C+P+LRRQLEDVDYVS EFE KK+SWQ+ PPEDALFAHPRLFRACVPPGMHRFRGNIWDY
Sbjct: 301 CQPKLRRQLEDVDYVSAEFEGKKLSWQE-PPEDALFAHPRLFRACVPPGMHRFRGNIWDY 360

Query: 361 DSRPQVMQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYL 420
           D+RPQVM  LGYP+ V D+IPEIT ARNIELGLGLQL FLHPSKHKFEHPRFC+ERLEY+
Sbjct: 361 DARPQVMNTLGYPLKVKDRIPEITNARNIELGLGLQLAFLHPSKHKFEHPRFCFERLEYV 420

Query: 421 GQKIQDIVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQVQDA 480
           GQKIQD+VMAERLL+KH+DAPGKWLQEKHRR+L+NKFCG+YLREK+LH+ I+YSE+VQD+
Sbjct: 421 GQKIQDLVMAERLLIKHIDAPGKWLQEKHRRILLNKFCGKYLREKHLHRFIIYSEEVQDS 480

Query: 481 YENNRRLRNPATTAVQQALHGLSYTVYGKPDVRRLMFE---GDKSTP--------IGLFG 540
           YE NRRLRNPATT+VQQA+HGL+YTVYGKPDVRRLMFE    +++ P        +GL G
Sbjct: 481 YEQNRRLRNPATTSVQQAIHGLAYTVYGKPDVRRLMFEVFDFEQTQPKAFITINKMGLLG 540

Query: 541 -----------------SNYPSMSKARVYADVNVLRPKDYWDYESLAVQWG--------- 600
                            S++       +Y +  + RPK + D   + V+           
Sbjct: 541 PKHRVGILKYRSQFMLLSHFILTQSFEIY-NACITRPKGHIDRHIIDVKGSYMIPQMHVR 600

Query: 601 -----DQDDYEVVRKVGRGKYSEVFEGINVNNNERCIIKILKPVKKKKIKREIKILQNLC 660
                DQDDYEVVRKVGRGKYSEVFEGINVN+NE+C+IKILKPVKKKKIKREIKILQNLC
Sbjct: 601 VPFQCDQDDYEVVRKVGRGKYSEVFEGINVNSNEKCVIKILKPVKKKKIKREIKILQNLC 660

Query: 661 GGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHS 720
           GGPN++KL DIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHS
Sbjct: 661 GGPNVIKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHS 720

Query: 721 QGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDY 780
           QGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDY
Sbjct: 721 QGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDY 780

Query: 781 DYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLLKIAKVLGTDELNAYLNKYHLELDPQL 804
           DYSLDMWSLGCMFAGMIFRKEPFFYGHDN DQL+KIA+VLGTDELNAYLNKY LEL+PQL
Sbjct: 781 DYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKIARVLGTDELNAYLNKYQLELEPQL 840

[Close]

BLAST of CmoCh03G009660 vs. TAIR 10
Match: AT4G37510.1 (Ribonuclease III family protein )

HSP 1 Score: 821.2 bits (2120), Expect = 9.6e-238
Identity = 400/512 (78.12%), Postives = 444/512 (86.72%), Query Frame = 0


Query: 11  SSPTPNFSFSSSLTPFVVKIHPNNPSLSNPSSGGLRIFAVAVDPQQELPKNNPQRLLKEL 70
           SS  P  SFSSS++ F  K       L+      LRI A      Q LP+++PQRLLKEL
Sbjct: 17  SSSAPEISFSSSISQFPSK---TQSILTKSRFQNLRICASVTAETQGLPRDSPQRLLKEL 76

Query: 71  EERKRATSPKKKVPPRRFILRPPLDDKKLAERFLNSPQLTLKSFPLLSSCLPSSRLNNAD 130
            +RK AT PKKKVPP+RFILRPPLDDKKLAERFLNSPQL+LKSFPLLSSCLPSS+LNNAD
Sbjct: 77  AQRKTATGPKKKVPPKRFILRPPLDDKKLAERFLNSPQLSLKSFPLLSSCLPSSKLNNAD 136

Query: 131 KTWMDEYLLEAKQALGYPLEPSDSYGDDNPAKQFDTLLYLAFQHPSCERTKARHIRSGHS 190
           KTW+DEYLLE KQALGY LEPS+S GDDNPAK FDTLLYLAFQHPSC+R +ARH+++GHS
Sbjct: 137 KTWIDEYLLEVKQALGYSLEPSESLGDDNPAKHFDTLLYLAFQHPSCDRARARHVKNGHS 196

Query: 191 RLLFLGQYVIELALAEYFLQRYPRESPGPMRERVFALIGKRNLPQWIKAASLQNLIFPYD 250
           RL FLGQYV+ELAL E+FLQRYPRESPGPMRERVFALIGKR LP+WIKAASLQNLIFPYD
Sbjct: 197 RLWFLGQYVLELALTEFFLQRYPRESPGPMRERVFALIGKRYLPKWIKAASLQNLIFPYD 256

Query: 251 DMDKMVRKDREPPVKNWDLSVRRGINKAFD-EEVYRVLFEVFGMDPDAEECEPRLRRQLE 310
           DMDK++RK+REPPVK+   ++   I   F   EVYRVLFEVFGMDPDA+EC+PR RRQLE
Sbjct: 257 DMDKLIRKEREPPVKSVFWALFGAIYLCFGMPEVYRVLFEVFGMDPDADECQPRSRRQLE 316

Query: 311 DVDYVSVEFEDKKISWQDM----PPEDALFAHPRLFRACVPPGMHRFRGNIWDYDSRPQV 370
           DVDYVSVEFE KK+ WQD+    PPEDALFAHPRLFRACVPPGMHRFRGNIWD+DS+P+V
Sbjct: 317 DVDYVSVEFEGKKLGWQDIATYKPPEDALFAHPRLFRACVPPGMHRFRGNIWDFDSKPKV 376

Query: 371 MQALGYPVPVTDKIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCYERLEYLGQKIQD 430
           MQ LGYP+ + D+I EITEARNIELGLGLQLCFLHPSKHKFEHPRFC+ERLEY+GQKIQD
Sbjct: 377 MQTLGYPLTMNDRIKEITEARNIELGLGLQLCFLHPSKHKFEHPRFCFERLEYVGQKIQD 436

Query: 431 IVMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKYLHKLIVYSEQVQDAYENNRR 490
           I MAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREK LH  I+YSE+V D YE+NRR
Sbjct: 437 IAMAERLLMKHLDAPGKWLQEKHRRLLMNKFCGRYLREKRLHNFIIYSEEVHDRYEHNRR 496

Query: 491 LRNPATTAVQQALHGLSYTVYGKPDVRRLMFE 518
           LRNPATTAVQQA+HGL+YT+YGKPDVRRLMFE
Sbjct: 497 LRNPATTAVQQAIHGLAYTIYGKPDVRRLMFE 525

[Close]

BLAST of CmoCh03G009660 vs. TAIR 10
Match: AT3G50000.1 (casein kinase II, alpha chain 2 )

HSP 1 Score: 543.1 bits (1398), Expect = 5.0e-154
Identity = 255/270 (94.44%), Postives = 264/270 (97.78%), Query Frame = 0


Query: 534 MSKARVYADVNVLRPKDYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNERC 593
           MSKARVY DVNV+RPKDYWDYESL VQWG+QDDYEVVRKVGRGKYSEVFEGIN+NNNE+C
Sbjct: 71  MSKARVYTDVNVIRPKDYWDYESLNVQWGEQDDYEVVRKVGRGKYSEVFEGINMNNNEKC 130

Query: 594 IIKILKPVKKKKIKREIKILQNLCGGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLY 653
           IIKILKPVKKKKI+REIKILQNLCGGPNIVKL D+VRDQHSKTPSLIFEYVNSTDFKVLY
Sbjct: 131 IIKILKPVKKKKIRREIKILQNLCGGPNIVKLLDVVRDQHSKTPSLIFEYVNSTDFKVLY 190

Query: 654 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG 713
           PTLTDYDIRYYIYELLKALD+CHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG
Sbjct: 191 PTLTDYDIRYYIYELLKALDFCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG 250

Query: 714 KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLLKI 773
           KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDN DQL+KI
Sbjct: 251 KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVKI 310

Query: 774 AKVLGTDELNAYLNKYHLELDPQLDALVGR 804
           AKVLGTDELNAYLNKY LELD QL+ALVGR
Sbjct: 311 AKVLGTDELNAYLNKYQLELDTQLEALVGR 340

[Close]

BLAST of CmoCh03G009660 vs. TAIR 10
Match: AT5G67380.1 (casein kinase alpha 1 )

HSP 1 Score: 542.3 bits (1396), Expect = 8.6e-154
Identity = 254/271 (93.73%), Postives = 265/271 (97.79%), Query Frame = 0


Query: 533 SMSKARVYADVNVLRPKDYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNER 592
           +MSKARVY +VNV+RPKDYWDYESL VQWG+QDDYEVVRKVGRGKYSEVFEGINVN+ E+
Sbjct: 76  AMSKARVYTEVNVIRPKDYWDYESLIVQWGEQDDYEVVRKVGRGKYSEVFEGINVNSKEK 135

Query: 593 CIIKILKPVKKKKIKREIKILQNLCGGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVL 652
           CIIKILKPVKKKKI+REIKILQNLCGGPNIVKL D+VRDQHSKTPSLIFEYVNSTDFKVL
Sbjct: 136 CIIKILKPVKKKKIRREIKILQNLCGGPNIVKLLDVVRDQHSKTPSLIFEYVNSTDFKVL 195

Query: 653 YPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHP 712
           YPTLTDYDIRYYIYELLKALD+CHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHP
Sbjct: 196 YPTLTDYDIRYYIYELLKALDFCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHP 255

Query: 713 GKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLLK 772
           GKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDN DQL+K
Sbjct: 256 GKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNQDQLVK 315

Query: 773 IAKVLGTDELNAYLNKYHLELDPQLDALVGR 804
           IAKVLGTDELNAYLNKY LELDPQL+ALVGR
Sbjct: 316 IAKVLGTDELNAYLNKYQLELDPQLEALVGR 346

[Close]

BLAST of CmoCh03G009660 vs. TAIR 10
Match: AT2G23080.2 (Protein kinase superfamily protein )

HSP 1 Score: 533.1 bits (1372), Expect = 5.2e-151
Identity = 248/270 (91.85%), Postives = 262/270 (97.04%), Query Frame = 0


Query: 534 MSKARVYADVNVLRPKDYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNERC 593
           MSKARVY DVNV+RPK+YWDYESL VQWG QDDYEVVRKVGRGKYSEVFEG NVN NERC
Sbjct: 1   MSKARVYTDVNVVRPKEYWDYESLVVQWGHQDDYEVVRKVGRGKYSEVFEGKNVNTNERC 60

Query: 594 IIKILKPVKKKKIKREIKILQNLCGGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLY 653
           +IKILKPVKKKKIKREIKILQNLCGGPNIVKL+DIVRD+HSKTPSL+FE+VNS DFKVLY
Sbjct: 61  VIKILKPVKKKKIKREIKILQNLCGGPNIVKLYDIVRDEHSKTPSLVFEFVNSVDFKVLY 120

Query: 654 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG 713
           PTLTDYDIRYYIYELLKALD+CHSQGIMHRDVKPHNVMIDH+LRKLRLIDWGLAEFYHPG
Sbjct: 121 PTLTDYDIRYYIYELLKALDFCHSQGIMHRDVKPHNVMIDHQLRKLRLIDWGLAEFYHPG 180

Query: 714 KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLLKI 773
           KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQL+KI
Sbjct: 181 KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKI 240

Query: 774 AKVLGTDELNAYLNKYHLELDPQLDALVGR 804
           AKVLGT+EL+ YLNKY L+LDPQL+ALVGR
Sbjct: 241 AKVLGTNELDHYLNKYQLDLDPQLEALVGR 270

[Close]

BLAST of CmoCh03G009660 vs. TAIR 10
Match: AT2G23080.1 (Protein kinase superfamily protein )

HSP 1 Score: 533.1 bits (1372), Expect = 5.2e-151
Identity = 248/270 (91.85%), Postives = 262/270 (97.04%), Query Frame = 0


Query: 534 MSKARVYADVNVLRPKDYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNNNERC 593
           MSKARVY DVNV+RPK+YWDYESL VQWG QDDYEVVRKVGRGKYSEVFEG NVN NERC
Sbjct: 1   MSKARVYTDVNVVRPKEYWDYESLVVQWGHQDDYEVVRKVGRGKYSEVFEGKNVNTNERC 60

Query: 594 IIKILKPVKKKKIKREIKILQNLCGGPNIVKLFDIVRDQHSKTPSLIFEYVNSTDFKVLY 653
           +IKILKPVKKKKIKREIKILQNLCGGPNIVKL+DIVRD+HSKTPSL+FE+VNS DFKVLY
Sbjct: 61  VIKILKPVKKKKIKREIKILQNLCGGPNIVKLYDIVRDEHSKTPSLVFEFVNSVDFKVLY 120

Query: 654 PTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG 713
           PTLTDYDIRYYIYELLKALD+CHSQGIMHRDVKPHNVMIDH+LRKLRLIDWGLAEFYHPG
Sbjct: 121 PTLTDYDIRYYIYELLKALDFCHSQGIMHRDVKPHNVMIDHQLRKLRLIDWGLAEFYHPG 180

Query: 714 KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLLKI 773
           KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQL+KI
Sbjct: 181 KEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKI 240

Query: 774 AKVLGTDELNAYLNKYHLELDPQLDALVGR 804
           AKVLGT+EL+ YLNKY L+LDPQL+ALVGR
Sbjct: 241 AKVLGTNELDHYLNKYQLDLDPQLEALVGR 270

The following BLAST results are available for this feature:

BLAST of CmoCh03G009660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZV0	1.3e-236	78.13	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Arabidopsis th...	[more]
A6YSL1	1.9e-214	70.91	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Zea mays OX=45...	[more]
Q8S1Z0	1.9e-214	73.02	Ribonuclease III domain-containing protein RNC1, chloroplastic OS=Oryza sativa s...	[more]
Q9AR27	2.6e-155	95.56	Casein kinase II subunit alpha-2 OS=Oryza sativa subsp. indica OX=39946 GN=HD6 P...	[more]
B6F107	2.6e-155	95.56	Casein kinase II subunit alpha-2 OS=Oryza sativa subsp. japonica OX=39947 GN=HD6...	[more]

BLAST of CmoCh03G009660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A164W1N4	0.0e+00	72.03	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021470 ...	[more]
A0A2U1NY53	0.0e+00	73.05	Ribonuclease III family protein OS=Artemisia annua OX=35608 GN=CTI12_AA215100 PE...	[more]
A0A4S4E9Q2	0.0e+00	62.63	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0173...	[more]
A0A6J1GEC3	6.2e-293	96.36	ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita...	[more]
A0A6J1IRK8	2.9e-290	95.40	ribonuclease III domain-containing protein RNC1, chloroplastic-like OS=Cucurbita...	[more]

BLAST of CmoCh03G009660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034304.1	0.0e+00	92.29	Ribonuclease III domain-containing protein RNC1, chloroplastic [Cucurbita argyro...	[more]
KAF3440849.1	0.0e+00	74.25	hypothetical protein FNV43_RR19135 [Rhamnella rubrinervis]	[more]
GFP96100.1	0.0e+00	76.79	casein kinase ii subunit alpha-1 [Phtheirospermum japonicum]	[more]
KZM91165.1	0.0e+00	72.03	hypothetical protein DCAR_021470 [Daucus carota subsp. sativus]	[more]
PWA78431.1	0.0e+00	73.05	ribonuclease III family protein [Artemisia annua]	[more]

BLAST of CmoCh03G009660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37510.1	9.6e-238	78.13	Ribonuclease III family protein	[more]
AT3G50000.1	5.0e-154	94.44	casein kinase II, alpha chain 2	[more]
AT5G67380.1	8.6e-154	93.73	casein kinase alpha 1	[more]
AT2G23080.2	5.2e-151	91.85	Protein kinase superfamily protein	[more]
AT2G23080.1	5.2e-151	91.85	Protein kinase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000719	Protein kinase domain	SMART	SM00220	serkin_6	coord: 567..806 e-value: 1.5E-54 score: 197.2
IPR000719	Protein kinase domain	PFAM	PF00069	Pkinase	coord: 567..784 e-value: 2.6E-54 score: 184.4
IPR000719	Protein kinase domain	PROSITE	PS50011	PROTEIN_KINASE_DOM	coord: 567..830 score: 37.375256
IPR000999	Ribonuclease III domain	SMART	SM00535	riboneu5	coord: 166..302 e-value: 2.7E-9 score: 46.9
IPR000999	Ribonuclease III domain	PROSITE	PS50142	RNASE_3_2	coord: 167..246 score: 11.510838
IPR000999	Ribonuclease III domain	CDD	cd00593	RIBOc	coord: 394..517 e-value: 2.26313E-18 score: 80.3494
IPR000999	Ribonuclease III domain	CDD	cd00593	RIBOc	coord: 166..261 e-value: 7.87184E-16 score: 73.4159
None	No IPR available	GENE3D	1.10.510.10	Transferase(Phosphotransferase) domain 1	coord: 644..803 e-value: 1.5E-94 score: 318.6
None	No IPR available	GENE3D	3.30.200.20	Phosphorylase Kinase; domain 1	coord: 567..643 e-value: 1.5E-94 score: 318.6
None	No IPR available	PIRSR	PIRSR633573-1	PIRSR633573-1	coord: 567..780 e-value: 5.0E-31 score: 106.1
None	No IPR available	PIRSR	PIRSR000550-2	PIRSR000550-2	coord: 565..770 e-value: 7.9E-15 score: 52.1
None	No IPR available	PIRSR	PIRSR038172-1	PIRSR038172-1	coord: 563..747 e-value: 1.4E-15 score: 54.6
None	No IPR available	PANTHER	PTHR11207:SF21	RIBONUCLEASE III DOMAIN-CONTAINING PROTEIN RNC1, CHLOROPLASTIC	coord: 1..517
None	No IPR available	CDD	cd14132	STKc_CK2_alpha	coord: 548..803 e-value: 3.05608E-170 score: 500.146
IPR036389	Ribonuclease III, endonuclease domain superfamily	GENE3D	1.10.1520.10	Ribonuclease III domain	coord: 159..274 e-value: 1.5E-8 score: 36.3
IPR036389	Ribonuclease III, endonuclease domain superfamily	GENE3D	1.10.1520.10	Ribonuclease III domain	coord: 386..518 e-value: 1.9E-10 score: 42.5
IPR036389	Ribonuclease III, endonuclease domain superfamily	SUPERFAMILY	69065	RNase III domain-like	coord: 132..248
IPR036389	Ribonuclease III, endonuclease domain superfamily	SUPERFAMILY	69065	RNase III domain-like	coord: 394..516
IPR014352	FERM/acyl-CoA-binding protein superfamily	GENE3D	1.20.80.10		coord: 1022..1084 e-value: 1.4E-9 score: 39.4
IPR011907	Ribonuclease III	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 1..517
IPR008271	Serine/threonine-protein kinase, active site	PROSITE	PS00108	PROTEIN_KINASE_ST	coord: 680..692
IPR017441	Protein kinase, ATP binding site	PROSITE	PS00107	PROTEIN_KINASE_ATP	coord: 573..596
IPR000582	Acyl-CoA-binding protein, ACBP	PROSITE	PS51228	ACB_2	coord: 1027..1084 score: 14.91132
IPR035984	Acyl-CoA binding protein superfamily	SUPERFAMILY	47027	Acyl-CoA binding protein	coord: 1026..1084
IPR011009	Protein kinase-like domain superfamily	SUPERFAMILY	56112	Protein kinase-like (PK-like)	coord: 537..800

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G009660.1	CmoCh03G009660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0010468	regulation of gene expression
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0006396	RNA processing
biological_process	GO:0016075	rRNA catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0000062	fatty-acyl-CoA binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding