CmoCh03G009480 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G009480
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr03: 7137910 .. 7138934 (-)
RNA-Seq ExpressionCmoCh03G009480
SyntenyCmoCh03G009480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTGACGCTCTCGAAGACGCACGTCAAGAATCTCCCCTCTCAACAAATGACGTGCGTTTCCCAGATCACCCAAAACCATTTTTTTAATTTAAAAGAATGTAATGAAGTTGGTGAGTTGGGTAATGGGTACTCATAATGGGTACTCATAATGGGTACTCATAATGGGTACTCACAATGGGTACTCACAATGGGTACTCACAATGGGATCAGAAGGAACGTAATATTGGACTACCAACTCAAACCTCTATCTGCTCGAAACGTGTAAGATCTGCAAAACCCAACTGGGTCCCCCTTCCTCTATTATATATTTATATTTATATTTATATATTTTCTAATCATTTGAGTATATATATTAAACCACCCGATTTTTAAAATTATTTGATTAATGGGCCTGGGAAATGAATGCGGGCCGGGGGCATTTAAAATTGGGCTTTATCAGTCGAGATTTCCATGTACAGCCCAGTTATGAAAATCTTTTACTCGTAATTACTGTAATTAATTATAAAATAAATGGTAGTTTAGATAGGGAGGCAGGGTTTGAAATTCGAATATTAAATCCACTTGGGTATTATCGATTTGGATTTATGGCTATTAAAAAGTTAATCAATAATTTAAACATAACTCAGTTCTTCAAATCTAAACAAAGCTTTGCGGTTTGAGGTTGCGCCACCAAATATTGATCTTGGCATCTTCGCATCTACGCATCTTGACAACGAATCTCCCTCCCTCTCTCTTTCTCTCCTCGTGGGGGTCTCCAACATTGGGATTTCTTCGTCATTTAGTGGTTAGATTTTTTTTTTTTTAATCCCTTTTTAATGCAATTCTTTTGCTTTCTAACTCGATCGTCCGCGATTTTTCTCGACTCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTAATTGCAGGTTTCAGTCCGCTAATTTTGATTGTTTTCCCTTGCTGCTGCTGGAGTGTGGACGAGGGTTTGCTTCTAAGCCTCTCTATTCTTCTGGGATTCTTCCAATTCTAG

mRNA sequence

ATGAGTCTGACGCTCTCGAAGACGCACGTCAAGAATCTCCCCTCTCAACAAATGACTTCTTCAAATCTAAACAAAGCTTTGCGGTTTGAGGTTGCGCCACCAAATATTGATCTTGGCATCTTCGCATCTACGCATCTTGACAACGAATCTCCCTCCCTCTCTCTTTCTCTCCTCGTGGGGGTCTCCAACATTGGGATTTCTTCGTCATTTAGTGGTTTCAGTCCGCTAATTTTGATTGTTTTCCCTTGCTGCTGCTGGAGTGTGGACGAGGGTTTGCTTCTAAGCCTCTCTATTCTTCTGGGATTCTTCCAATTCTAG

Coding sequence (CDS)

ATGAGTCTGACGCTCTCGAAGACGCACGTCAAGAATCTCCCCTCTCAACAAATGACTTCTTCAAATCTAAACAAAGCTTTGCGGTTTGAGGTTGCGCCACCAAATATTGATCTTGGCATCTTCGCATCTACGCATCTTGACAACGAATCTCCCTCCCTCTCTCTTTCTCTCCTCGTGGGGGTCTCCAACATTGGGATTTCTTCGTCATTTAGTGGTTTCAGTCCGCTAATTTTGATTGTTTTCCCTTGCTGCTGCTGGAGTGTGGACGAGGGTTTGCTTCTAAGCCTCTCTATTCTTCTGGGATTCTTCCAATTCTAG

Protein sequence

MSLTLSKTHVKNLPSQQMTSSNLNKALRFEVAPPNIDLGIFASTHLDNESPSLSLSLLVGVSNIGISSSFSGFSPLILIVFPCCCWSVDEGLLLSLSILLGFFQF
Homology
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BLAST of CmoCh03G009480 vs. NCBI nr
Match: KAG6604120.1 (hypothetical protein SDJN03_04729, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 0 

Query: 15 SQQMTSSNLNKALRFEVAPPNIDLGIFASTHLDNESPSLSLSLLVGVSNIGISSSFSGFS 74
          S +  SSNLNKALRFEVAPPNIDLGIFASTHLDNESPSLSLSLLVG+SNIGISSSFSGFS
Sbjct: 21 SARNVSSNLNKALRFEVAPPNIDLGIFASTHLDNESPSLSLSLLVGISNIGISSSFSGFS 80

Query: 75 PLILIVFPCCC 86
          PLILIVFPCCC
Sbjct: 81 PLILIVFPCCC 91

The following BLAST results are available for this feature:
BLAST of CmoCh03G009480 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G009480 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G009480 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6604120.11.1e-2692.96hypothetical protein SDJN03_04729, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh03G009480 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G009480.1CmoCh03G009480.1mRNA