CmoCh03G005150 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G005150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Wound-responsive family protein
Location	Cmo_Chr03: 5359268 .. 5359495 (-)
RNA-Seq Expression	CmoCh03G005150
Synteny	CmoCh03G005150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAGGTATTGGGCCAATTCGCGGCACGGTTTGTTCAGAGGACGAGAGATCAGGCTATGAAGAGCGATCCCGCTGCCTTGAAATCTCTCAAGGATTCAACTTCTTCTTCTTCTTCCAGGTGCTACTCCGGCAACAAACTCGTCGCCGGTGAGGACCGGAAGGTTAAGACAGCCGAAGAATCCTTAAGAACCGTCATGTATTTGAGCTGTTGGGCTCCTACTTGA

mRNA sequence

ATGAGCAAGGTATTGGGCCAATTCGCGGCACGGTTTGTTCAGAGGACGAGAGATCAGGCTATGAAGAGCGATCCCGCTGCCTTGAAATCTCTCAAGGATTCAACTTCTTCTTCTTCTTCCAGGTGCTACTCCGGCAACAAACTCGTCGCCGGTGAGGACCGGAAGGTTAAGACAGCCGAAGAATCCTTAAGAACCGTCATGTATTTGAGCTGTTGGGCTCCTACTTGA

Coding sequence (CDS)

ATGAGCAAGGTATTGGGCCAATTCGCGGCACGGTTTGTTCAGAGGACGAGAGATCAGGCTATGAAGAGCGATCCCGCTGCCTTGAAATCTCTCAAGGATTCAACTTCTTCTTCTTCTTCCAGGTGCTACTCCGGCAACAAACTCGTCGCCGGTGAGGACCGGAAGGTTAAGACAGCCGAAGAATCCTTAAGAACCGTCATGTATTTGAGCTGTTGGGCTCCTACTTGA

Protein sequence

MSKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSSRCYSGNKLVAGEDRKVKTAEESLRTVMYLSCWAPT

Homology

[Close]

BLAST of CmoCh03G005150 vs. ExPASy TrEMBL
Match: A0A5D3CPJ3 (Wound induced protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007060 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.5e-23
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MSKVLGQFAARFVQRTRDQAMKSDPAALKSLKD----STSSSSSRCYSGNKLVAGEDRKV 60
          MS+V GQFA R +Q+TRDQA+KSDPAALKSLKD    S+SSSSS+CYSGNKL AGE + V
Sbjct: 1  MSRVFGQFATRCIQKTRDQAVKSDPAALKSLKDSSSSSSSSSSSKCYSGNKLSAGEGQNV 60

Query: 61 KTAEESLRTVMYLSCWAPT 76
          K AEESLRTVMYLSCWAPT
Sbjct: 61 KIAEESLRTVMYLSCWAPT 79

[Close]

BLAST of CmoCh03G005150 vs. ExPASy TrEMBL
Match: A0A0A0KK17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516870 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.1e-21
Identity = 57/76 (75.00%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 2   SKVLGQFAARFVQRTRDQAMKSDPAALKSLKD--STSSSSSRCYSGNKLVAGEDRKVKTA 61
           ++V GQF  R +Q+TRDQA KSDPAALKSLKD  S+SSSSS+CYSGNK  AGE + VK A
Sbjct: 36  AQVFGQFVTRCIQKTRDQAAKSDPAALKSLKDSSSSSSSSSKCYSGNKFSAGEGQNVKIA 95

Query: 62  EESLRTVMYLSCWAPT 76
           EESLRTVMYLSCWAPT
Sbjct: 96  EESLRTVMYLSCWAPT 111

[Close]

BLAST of CmoCh03G005150 vs. ExPASy TrEMBL
Match: A0A444WYC9 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g100948 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-08
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1   MSKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSSR--------CYSGNKLVAGE 60
           MS+V+ Q   R VQ  +DQ  K D + LKSLKDS  S SS+         ++ + + + +
Sbjct: 67  MSRVMYQAGVRVVQGMKDQRSKCDYSTLKSLKDSACSPSSKQARRFSSSSFNSSAIKSSD 126

Query: 61  DRKVKTAEESLRTVMYLSCWAP 75
             K+K AEESLRTVMYLSCW P
Sbjct: 127 SHKIKQAEESLRTVMYLSCWGP 148

[Close]

BLAST of CmoCh03G005150 vs. ExPASy TrEMBL
Match: A0A5N5MZZ3 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_005484 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-08
Identity = 42/81 (51.85%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 1  MSKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSS---RCYSG----NKLVAGED 60
          MS+VL Q   R VQ  +DQA K D +A+KSL+DS  SSSS   R +SG    +  +    
Sbjct: 6  MSRVLYQSGMRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSVFMDARS 65

Query: 61 RKVKTAEESLRTVMYLSCWAP 75
           K K AEESLRTVM+LSCW P
Sbjct: 66 EKFKQAEESLRTVMFLSCWGP 86

[Close]

BLAST of CmoCh03G005150 vs. ExPASy TrEMBL
Match: B9H210 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G033300 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.5e-08
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 2  SKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSS---RCYSG----NKLVAGEDR 61
          S+VL Q   R VQ  +DQA K D +A+KSL+DS  SSSS   R +SG    +  +  ++ 
Sbjct: 7  SRVLYQSGVRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSAYMNAKNE 66

Query: 62 KVKTAEESLRTVMYLSCWAP 75
          K K AEESLRTVM+LSCW P
Sbjct: 67 KFKQAEESLRTVMFLSCWGP 86

[Close]

BLAST of CmoCh03G005150 vs. NCBI nr
Match: KAG6603727.1 (hypothetical protein SDJN03_04336, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.8 bits (364), Expect = 3.0e-31
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MSKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSSRCYSGNKLVAGEDRKVKTAE 60
          MSKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSS+CYSGNKLVAGEDRKVKTAE
Sbjct: 1  MSKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSSKCYSGNKLVAGEDRKVKTAE 60

Query: 61 ESLRTVMYLSCWAPT 76
          ESLRTVMYLSCWAPT
Sbjct: 61 ESLRTVMYLSCWAPT 75

[Close]

BLAST of CmoCh03G005150 vs. NCBI nr
Match: TYK13098.1 (wound induced protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MSKVLGQFAARFVQRTRDQAMKSDPAALKSLKD----STSSSSSRCYSGNKLVAGEDRKV 60
          MS+V GQFA R +Q+TRDQA+KSDPAALKSLKD    S+SSSSS+CYSGNKL AGE + V
Sbjct: 1  MSRVFGQFATRCIQKTRDQAVKSDPAALKSLKDSSSSSSSSSSSKCYSGNKLSAGEGQNV 60

Query: 61 KTAEESLRTVMYLSCWAPT 76
          K AEESLRTVMYLSCWAPT
Sbjct: 61 KIAEESLRTVMYLSCWAPT 79

[Close]

BLAST of CmoCh03G005150 vs. NCBI nr
Match: KGN49179.1 (hypothetical protein Csa_003127 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 57/76 (75.00%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 2   SKVLGQFAARFVQRTRDQAMKSDPAALKSLKD--STSSSSSRCYSGNKLVAGEDRKVKTA 61
           ++V GQF  R +Q+TRDQA KSDPAALKSLKD  S+SSSSS+CYSGNK  AGE + VK A
Sbjct: 36  AQVFGQFVTRCIQKTRDQAAKSDPAALKSLKDSSSSSSSSSKCYSGNKFSAGEGQNVKIA 95

Query: 62  EESLRTVMYLSCWAPT 76
           EESLRTVMYLSCWAPT
Sbjct: 96  EESLRTVMYLSCWAPT 111

[Close]

BLAST of CmoCh03G005150 vs. NCBI nr
Match: RYQ82362.1 (hypothetical protein Ahy_B10g100948 isoform A [Arachis hypogaea])

HSP 1 Score: 67.4 bits (163), Expect = 6.0e-08
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1   MSKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSSR--------CYSGNKLVAGE 60
           MS+V+ Q   R VQ  +DQ  K D + LKSLKDS  S SS+         ++ + + + +
Sbjct: 67  MSRVMYQAGVRVVQGMKDQRSKCDYSTLKSLKDSACSPSSKQARRFSSSSFNSSAIKSSD 126

Query: 61  DRKVKTAEESLRTVMYLSCWAP 75
             K+K AEESLRTVMYLSCW P
Sbjct: 127 SHKIKQAEESLRTVMYLSCWGP 148

[Close]

BLAST of CmoCh03G005150 vs. NCBI nr
Match: KAG5246868.1 (Wound-responsive family protein [Salix suchowensis])

HSP 1 Score: 67.4 bits (163), Expect = 6.0e-08
Identity = 42/81 (51.85%), Postives = 51/81 (62.96%), Query Frame = 0


Query: 1  MSKVLGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSS---RCYSG----NKLVAGED 60
          MS+VL Q   R VQ  +DQA K D +A+KSL+DS  SSSS   R +SG    +  +    
Sbjct: 6  MSRVLYQSGMRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSVFMEARS 65

Query: 61 RKVKTAEESLRTVMYLSCWAP 75
           K K AEESLRTVM+LSCW P
Sbjct: 66 EKFKQAEESLRTVMFLSCWGP 86

[Close]

BLAST of CmoCh03G005150 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-05
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 5  LGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSSRCYSGNKLVAGEDRKVKTAEESLR 64
          LG     ++ R+ +Q ++++  ++   K  +SSS S   +     +GE  K K AEESLR
Sbjct: 24 LGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTS----SGESEKAKKAEESLR 83

Query: 65 TVMYLSCWAP 75
          TVMYLSCW P
Sbjct: 84 TVMYLSCWGP 89

[Close]

BLAST of CmoCh03G005150 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 40.0 bits (92), Expect = 9.6e-04
Identity = 26/71 (36.62%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 5  LGQFAARFVQRTRDQAMKSDPAALKSLKDSTSSSSSRCYSGNKLVAGEDRKVKTAEESLR 64
          LG     +V R+ +Q ++++  ++   K  +SSS                K K AEESLR
Sbjct: 24 LGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSS-----------IDYTNKTKQAEESLR 83

Query: 65 TVMYLSCWAPT 76
          TVMYLSCW P+
Sbjct: 84 TVMYLSCWGPS 83

The following BLAST results are available for this feature:

BLAST of CmoCh03G005150 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G005150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CPJ3	5.5e-23	77.22	Wound induced protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A0A0KK17	5.1e-21	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516870 PE=4 SV=1	[more]
A0A444WYC9	2.9e-08	46.34	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g100948 PE=4 SV=1	[more]
A0A5N5MZZ3	3.8e-08	51.85	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_005484 PE=4 SV=1	[more]
B9H210	6.5e-08	51.25	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G033300 PE=4 ...	[more]

BLAST of CmoCh03G005150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603727.1	3.0e-31	98.67	hypothetical protein SDJN03_04336, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK13098.1	1.1e-22	77.22	wound induced protein-like [Cucumis melo var. makuwa]	[more]
KGN49179.1	1.1e-20	75.00	hypothetical protein Csa_003127 [Cucumis sativus]	[more]
RYQ82362.1	6.0e-08	46.34	hypothetical protein Ahy_B10g100948 isoform A [Arachis hypogaea]	[more]
KAG5246868.1	6.0e-08	51.85	Wound-responsive family protein [Salix suchowensis]	[more]

BLAST of CmoCh03G005150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10270.1	1.0e-05	40.00	Wound-responsive family protein	[more]
AT4G10265.1	9.6e-04	36.62	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 12..74 e-value: 1.5E-12 score: 48.3
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 7..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..42
None	No IPR available	PANTHER	PTHR33090:SF68	OSJNBA0043L09.16 PROTEIN	coord: 7..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G005150.1	CmoCh03G005150.1	mRNA