CmoCh03G004770 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G004770
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Two-component response regulator-like APRR7
Location	Cmo_Chr03: 5182886 .. 5188519 (-)
RNA-Seq Expression	CmoCh03G004770
Synteny	CmoCh03G004770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTTAAATTTATTCTTCTAAATTGTTATGTTCTTTCTTCCCCCAATTCGGAAGGATGGAGAGGAAATACTTCATATTTTATTGTTTGGTTGAGTAGATTCGCTGCAAACAGGGATTTGTAACAGCGTTGGGTATAATATCTCTACAGAGGAATAATAATATTCAATTCTTGTAACCTACTGTTAATTATTGAAAAATTGTTCCAGTTGAAGATTTTTATGAAGTTCTGACCTCTGGTTGGAAAGAAACAACCGGACTTTCAACAACAAATGTCTCTCATGTGACAGATATATGGAATCTATTTTTGTAAGTGTTCTTCCTGTTTACACATACTAGTTTAAATGATCTTTTGATATATTGGTGGGCCTTTTTGTAAGACTAGTTCCCCGAGGTATTTTCCCTTGTATATACACTGCATATCATCGTTGAAATATCTGTTTCTCAGTTTTAAAAGTGTTCTAGCAAGTTAGTCCTCTGTGGAAGTATATCTGTATATGGGAGAGTTAGGTCTAGAATATTCGTAGGGATATGATTTTCTTGTATGTTTTTGTAAAAGACGGATGTAAAAAGTTATGTTAAAAGATACTAATTGATGATAATGATGGATTTTGATGATAATCTAGTTGGACTAGAGTAGACAATTGCAGTTGGCCTAGCTGGTTGGCTCTAGCATTTGCCGAATAGTAAGCTTTCACAGCTGCAAATATTGGATGTGTGGGAGTATGGGGTACAACACCAACTCTTGACTACGATAGTTTGTGTTCCATGTTACAATTGCACTTCTTTGGGACTCACAAAGTGATTGTAGGACACTTTACTCTTGCTGTTGACTAAGTCAATCAACTCTGGATCTTTAGTACCACAAATGACCTATCTCCTTGCCTCTACCCATTCTTGGAAAAATTCTTGGAAAATAGAGTTAGTCAAAGTTTTGGAAAAGCATTTTTTGAGCAGGAAGATGTTATATGCTAACAAGCAATAAGAGAGAGCGACATTTTTAACATATAACTTTGGTAGGAAGATTGAAAGCCTGGTTATATTTCCTATAGTCATTATGAAGCAAATTGCCTTTGTTGGTGTAAACATTGAAAGTGGTGATGAGTGATATGCGTACAAAATTATAAGGAAAGTAAATAATTATGCTAGAATGTAAGGGCATACCATAAAAGTTTGGTAAAGAGTTAAGAAGAACATGAGAGTAAGGTCAAATGTTTGTAATGGACATGCGGACATGAATAGCATGCCTTGGAAAAATATGATTGTGACATCCTCATCAACTTGTTGACGTCCTTGACAACCAACTGTGCTCGAACTCCACAATTTAAATAGTGGAAGACTTTAGGTTTTCAGTGTACTCTCAACGAATCCGTGCATTGTGGAGACCCTTCCTCTTTATGAGTAACTTTTCTAGATCTTTTCTTGGTTTGTCATTTTGTTGTGTCTCTTTGCTAATATCTTTTTTTACCTCTTTTCGATGGTATTTTTTACTATGACAAGAGGCCGAAATGTCTCGTTGTGATTGATATGTACTGGGTCTAGATGATAGGGTTGCAAAGTACTTAAGTGAATCTTCATCTATGAAAGAAGTTAAACTCTTAAGTGAATCTTCATCTATGAAAGAAGTTAAACTCTATACGATGTTTAGCTTGCTTTTAAAACGACTTCAATTGAACCTTCATATTTTTGCACCAAGTGTTGGTCTTAACTTCTCCAGAATTGGAGTTGTTCTAACCTCAACTTCATAAGTATTTGGTTGCTCTTTGTGAACACTAAGGAACGCTGCCTCGAACTAGCTCACTTTTTCATACATTTGGATGTCTAATTTAGATAGGCACGAGCTACTTTGGATGTTTCCACTCTTTAGTGAAGTTGTAAGCTTGAGGACTTTTTCTTATATAAGGGTGATCAACATATGGCATGAACAAAGTGTCTACTGCACATGATCTTGTGCATTGAAGAACTCTTTTGACAATTAAAGTTGAACTAATCTAATATCCAGCACATTAACCCTATTCTTCTATCTCACATCTGTCTTAGATACTCTTCAAGCATGCTATTGAAGTGTTTGGTCTTGTCACGTGGTGATAACTAGGAGAGATATTTAGATTTGAGCTTAACAGACCGAATAACATTGTCTCGGTCCCCGTGAATCGACCATCATGGTCATTAACAATGTTTCTTAGAACACCTCGTAACTTAACCACATTGTTAAAGAACTAGGTTGTCATCGTGGTTGAACACGTCTTTGATATCGGAATGGAGAATTTGTTGACAATGACGAGGTGGGTGATGGAGTAGAGGGTGCACCCTCCCATGTCCTTGTAGGCACGATCTAGAGCTCTCAAGTTTCGACACACGGTACATACAAATGTTTGCCTTTAATGTTTCATAATGTTCTTCTGAACTGTTCCATTCAAAGAGCCAACATGTACAAGACTCCATGTTCACTCTTATGACTAAGGGCATCAAGTTCTTGATTAGCTGAGACATATTATTGTCCTTTAGCTTACTTTGATGACAATTTTGGTTGGTTTAAAAGTGATTTTTCTTTTCATATATATTATTATTATTATTATTATTATTACTCCTATGTAAAACTTTTTTTTATAATATTTTTAATTTTAAAATATGTCACGTCTACACATTTGTAACAAAATCATCGAGCAAACAATTAAATTAAGCTATTTCATAAATGTTAGTGATTTTATTGTATGATTTTGAAGTTTATTGACTAAATTAACCTTTTGTTCAAAACTTAGGGATAAAAAAAAAATGTACCTAAACTTATTTGATATTTAATGCATATTAAAATTGTGGCTGCCTTATTTATTAATTATGTAACTAATTCTATGATATAAATTGTAAACGAACAAATTTTTGACATTTTCATAGCAATGTAATGACATTTTTAACATAATTAAAGTCGAGTTTAATTGGATTATATATTTCATTTGTGGAACTCAAAACAAAAATAAAACGATCACCTCTCTCACCCATCTAAATATAGATCGACCAACCATGAAAAGATTAAAAACGTAAAAAAATAAAATAAAAATGTGGAAGAATATATTTGAATATTTGACTTTGTTAACTATATTTTTGCCTAAATATATAATTTATAACATTAAAACATTTTGGTTTTATATGTTTTATATATTTCATTTGTGCATGATTGACTATGATTATGTGACGTGGTGCTTTCCTATTGGAGGGTTAGACTAATTTATAATATTATGTAGAAAGAAATAAAAGAGTCATGATTGATGGTGTTGATGCAACGTGGCACTTATCTATTGGAGGGTTAGATTAATTTATAATATTTTGCAGAAAGAAATAGAATATTAATTTTGAATTACTTTGTCTCAAAATGAATTACTCTGTCCTAAAAATTGTAAAAAAAATCAAATTATATGAGAAAAGAAAAACGACGAATGTGTTCCACTATGATTGTCAATATTCTACTATCGCCTGTAGTATATCGCAATCTTTCCAGGTAACTATTTTTTGATATTTTTACCTAATCACGTGTGATTATAAATTACGGACCAATGAAGTGAGACTTTTGATTGCTTTGTATCTGACATTTAGTACGAGCGAAATTTAACCCCGTCAACCTTTTTCAACCATTTTTTTAATTAAATAAGTCATTTAAACCTTTTTTTTTTTTTGAATGTTTTAGTCCATTATAAATTATTTATGTAAATTTTTAATTACTTCATTTTAGTGAAATGCGAATTTTAATATTTTAATATTGAATTTTATGGTCTTGTTAATTGTTAATTAGGGGTTATTATTAAATATGTAACATTTTTTTTCTAATACATGTGGTAATACATTTATAATTTCGTTGTTAGTGGAGATTTGGTTAGATTGAAACTAACTTTATAAACCAAAATGAAATATAATATTCAAATAATATTAAATGAAATATTATTACAGCTCATATATCTCATTCCATTACACTTCACAATTTAAAATTATTCAAATTTAGAAACTTAAAATTAATTCCTAATGTTATAATTTGTTTCTTAATTTTATGTTAAGATAATACAAATTACCAAGTATGCCCTTTTGTTTATAATTGTCATAATTTATCAATAAAATATTACGCGTAGTTAAATAATTAAAAAGCACATATTTAGATACATAGATATGGTTAAATTATTTATTTTAGTGGATTATATTTATACATTGAGGATAAATAAGTAATTTTTGAATATTAAAAATTATAAAAAAATAATAATAAAAGTACAAATTATCTAAAATATTAACCGAGCAAATATTTTATTTAGGTTTATTTCTTTAGTGAAAGAAAATATGACGTGTCTGTCCATCTTCTTTTTTTTTAATCATTATCTACCGGACTTGACGGAAAGGCAGCCAAATACCCTCGACGTCCGTCAAACCCACGTTATCTTTCCGTCAATCGGCTCTGAATTAACGCCACGTGTCCCGACTAAATCTCCCGGATCCATACAATCTCTCCAGCTCCTGGCTTTAGATTTCGTTCCGCTTCTAAAACCAGTGGCCCCGAGTTTTTCTGCCACGTTGGAAATATCTTCGTCCTACGTGGCACACTTGGACCATCCCACAGCTTCAATTTGTCCACGTCATCTCCGCGTACCCTCTGCAATATCTTCTTCCATTTTTTTTTTTTTTTTAATTTTAAAATTTTCTCTTCCAATTAGTTCTGAAGTGGAAAAACTGAAAATTCGGCCATTTCCCCTTTCTTCAACCTTCGGCCTCCTTTTTCCGACGCTGGTCAAGCAACTTCGTCACTGCTACTGTGCTCGCAAATAAGAGAGGAGGTGAAATTCAGCGATTTCTGGATTTCCGATCAAGTTAAGCTCTGAGATTTTGCATTTATTGTGACTTTTTTTTTTCCATCTCCAACCTCCAGATCGATCCATATCATGAGATTGGTGAAGTTCTCATGTTCATCATGTTTCTGTTTCTAATACTTTTGCTGTTTTAATTCCTAGCTAGTCGTGTTTTGGTGATTCATACCTATTGTTATATTTGCTTTTTCTTTCATTCTTTTTCAGTAATAATCAATAAAGACTCTGCATCAAGGTTGAATATGAGAAGTCTCTGTTTCATAGATTAGTTCGTTGATCATCTAGGTTATCTGTAGATCGCTTTTTGTGGAAGGTCGGTCTCTTGCTGTTAATGTCAGCAGATTCACGGTATGCTTCAGTTAGGGTTTGATAATTTTTCTTTAATCTGCCGGGTTCAGTTACGTTGTTCACTTTCTCGCTGCTGCTGGGAATAGGATTAATTGCTTAACGTCTGCGAACATTTGTTTTTGCAGTGCTGTTATTCTTGTTTTTCTAGTATAATGGTTAGTCTTTTAAGGTGCAGTAGTTTTTCCAGGGAGCAAGCAACCATTGGATTTCGAGGCTCCTTGTGGGATTTAGAATACGCAAGGAATCTATCTCCATTCCCCCACAATAGTTTGTGTGGACTTTTTGTTTCACTTCCACAGCACCTCTGGTCGTTTCCACTTGTATAAGTTGAAGGGTGCCTTTGGGTTCTTGAACACCGCTTAGAGTTATGTGCTATTGTTCTGCTGATTGGAGAGGGATTTTAGATACTGGGAAACTACACCTTCACGTACTCAATCTTTCTGA

mRNA sequence

ATGAGGTTTAAATTTATTCTTCTAAATTGTTATGTTCTTTCTTCCCCCAATTCGGAAGGATGGAGAGGAAATACTTCATATTTTATTGTTTGGTTGAGTAGATTCGCTGCAAACAGGGATTTGTTATCTGTAGATCGCTTTTTGTGGAAGGTCGGTCTCTTGCTGTTAATGTCAGCAGATTCACGGGAGCAAGCAACCATTGGATTTCGAGGCTCCTTGTGGGATTTAGAATACGCAAGGAATCTATCTCCATTCCCCCACAATAGTTTGTGTGGACTTTTTGTTTCACTTCCACAGCACCTCTGGTCGTTTCCACTTAGGGATTTTAGATACTGGGAAACTACACCTTCACGTACTCAATCTTTCTGA

Coding sequence (CDS)

ATGAGGTTTAAATTTATTCTTCTAAATTGTTATGTTCTTTCTTCCCCCAATTCGGAAGGATGGAGAGGAAATACTTCATATTTTATTGTTTGGTTGAGTAGATTCGCTGCAAACAGGGATTTGTTATCTGTAGATCGCTTTTTGTGGAAGGTCGGTCTCTTGCTGTTAATGTCAGCAGATTCACGGGAGCAAGCAACCATTGGATTTCGAGGCTCCTTGTGGGATTTAGAATACGCAAGGAATCTATCTCCATTCCCCCACAATAGTTTGTGTGGACTTTTTGTTTCACTTCCACAGCACCTCTGGTCGTTTCCACTTAGGGATTTTAGATACTGGGAAACTACACCTTCACGTACTCAATCTTTCTGA

Protein sequence

MRFKFILLNCYVLSSPNSEGWRGNTSYFIVWLSRFAANRDLLSVDRFLWKVGLLLLMSADSREQATIGFRGSLWDLEYARNLSPFPHNSLCGLFVSLPQHLWSFPLRDFRYWETTPSRTQSF

Homology

[Close]

BLAST of CmoCh03G004770 vs. ExPASy TrEMBL
Match: A0A5A7TUS5 (Two-component response regulator-like APRR7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001300 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 30/37 (81.08%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 57 MSADSREQATIGFRGSLWDLEYARNLSPFPHNSLCGL 94
          MS DSREQATIGF GSL DLEYA NLSP  H SLCGL
Sbjct: 1  MSGDSREQATIGFCGSLLDLEYALNLSPILHRSLCGL 37

[Close]

BLAST of CmoCh03G004770 vs. ExPASy TrEMBL
Match: A0A0A0KZE3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293040 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-05
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 61  SREQATIGFRGSLWDLEYARNLSPFPHNSLCGL 94
           +REQATIGF GSL DLEYA NLSP PH SLCGL
Sbjct: 91  TREQATIGFCGSLLDLEYALNLSPIPHRSLCGL 123

[Close]

BLAST of CmoCh03G004770 vs. NCBI nr
Match: KAA0047313.1 (two-component response regulator-like APRR7 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-06
Identity = 30/37 (81.08%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 57 MSADSREQATIGFRGSLWDLEYARNLSPFPHNSLCGL 94
          MS DSREQATIGF GSL DLEYA NLSP  H SLCGL
Sbjct: 1  MSGDSREQATIGFCGSLLDLEYALNLSPILHRSLCGL 37

[Close]

BLAST of CmoCh03G004770 vs. NCBI nr
Match: KAE8649517.1 (hypothetical protein Csa_023879, partial [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 61 SREQATIGFRGSLWDLEYARNLSPFPHNSLCGL 94
          +REQATIGF GSL DLEYA NLSP PH SLCGL
Sbjct: 23 TREQATIGFCGSLLDLEYALNLSPIPHRSLCGL 55

The following BLAST results are available for this feature:

BLAST of CmoCh03G004770 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G004770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TUS5	1.2e-06	81.08	Two-component response regulator-like APRR7 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0KZE3	1.3e-05	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293040 PE=4 SV=1	[more]

BLAST of CmoCh03G004770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047313.1	2.4e-06	81.08	two-component response regulator-like APRR7 [Cucumis melo var. makuwa]	[more]
KAE8649517.1	2.7e-05	81.82	hypothetical protein Csa_023879, partial [Cucumis sativus]	[more]

BLAST of CmoCh03G004770 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G004770.1	CmoCh03G004770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0016310	phosphorylation
biological_process	GO:0048511	rhythmic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016301	kinase activity