CmoCh03G004250 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G004250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr03: 4929490 .. 4931189 (-)
RNA-Seq Expression	CmoCh03G004250
Synteny	CmoCh03G004250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCGTTTGCATCAGCAGCGTTGTCGGACTGGTGTCGAACCTCTGTTTTTCCATGTTCCTCTCCGACTGCCACCGCATTGTGTCGTGGGCCAACGGACCCAACCACCCCATCATGTCCTCCACCGCTTCCTTCCACCCCGCCGCAAGCGACTGCGTATCGCTGTCGCTCCCCATTTTCTCCTCTCCTCCTTTATTCATCCAATTGTTCCTTCTCAATTTAGCCCTCAAATTTTGCTTTATCCTTGCTGGCAACATCTCGTAAAACTTCCCACGCGCTTCTTCCCCTATTGTCGTCGGAGAGTGCAGGCAACGCTCCGCGAAGAGTATCACGTTCGCGTAGTTCAACGAAAGCCCTGTTCCCCCCACCGTCGTTGGTGGCGCTGATGTGTATACTCTGTTATTTTCCAACTTCGAGGAATTGAGTTCCTCGGAACGAAATCCGGCGACGTCGTTTACTCTAATCACACTCGGAAATCGGACCAATTCCTTTTTCCCCCTTTTCGGAATCGGCCCAGATTGTGTTTCAAACTTATATTCGCCGTCGCCGCTGCCGGACTTTCGATGTCCGCCATAGAAATTCCACCTCCAGAATCTGTCTCTGAAGATTCCAGTTGGTGGGTTGTGATACGAACAACAATCCTGCTCCGGAACATACGGGCTGAAGACGGTGGAAATTCTCGCGTATATGACGCAGATGAGTCGCGTCATCATTCCGACAGCGTAATCGAAACTCTGATTCCATAACGAAATTTCTTTGGCATGCTTCACGTCTTTCCTCTGGGTAGCCAGTTTTCTTTTCAACATTTCGAAATTCACAGGTGGGTATTGATTTGGACTCGAGGTTCTCCAATTCTGCAGCTTCTTCTCCGACGCTTCCATTTCGAACAGAGCTTCCATAGAAGAATGAAGCTCCGCCGTGGAGAACACCAGCTTCTCCATTCTTCCGATAAGTTTAGCAACGTTCTTGAAACCCGAATTGGATTTGACTGAATTGAATATTCCATCTTTCATATTGGAGAACACGAGGTCGAATCGGGCGAGGCCCAAATCGGCGCACTTTTTGCTGAGTCGAGAAACAGAGGAGGCGGCATTATTCAATTCCTCGAGCCGCTCGGAACAAGCGAGATTGAGAAGAAACTCCTTATCTTTGGAATTCAAATAGGCGACACCTTGGGAGCGGACGACGACGTTCCGGAGCTTGAAAATCTCTTCGTCGGAGAGAGATCGGTAGAGAGAAATGAGGGCAGCCATGGTTTTAGCAGTGTCGAAGGAGAGGATCCCAAGGGTAGGAGGAGGGGATTTTTCATGGAAGAAGAATTGAAGTGTGTGATGGGTAGTTCCTTTAATGGTCCCTGAAAGCCACGGCATGGTGGCAACAACCATGGCCTGTGAAAAGAGACTGTAAAAATGGGTCTGGGCAATGAAATTTAGGATTAATTGAGGAAGAAGAAGAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGAATGGAAATGGGGTGGCGATACTCGTGAGAAAGCCGGACATTTGGGTGGTGGCTCATGAAGACGAGGCCAGAGAGATGAGATTTGCGAGGCCGACAGAGCGGCGTTCCAATTCCGAACAGGAAAAGGAACAAACTTTGGGTCGCTCTAAAGATCAAAATATGAAAGGCACGACCAAATCAAGAGCTGTAACTAAATATTGA

mRNA sequence

ATGCAGCGTTTGCATCAGCAGCGTTGTCGGACTGGTGTCGAACCTCTGTTTTTCCATGTTCCTCTCCGACTGCCACCGCATTGTGTCGTGGGCCAACGGACCCAACCACCCCATCATGTCCTCCACCGCTTCCTTCCACCCCGCCGCAAGCGACTGCGTATCGCTGTCGCTCCCCATTTTCTCCTCTCCTCCTTTATTCATCCAATTGTTCCTTCTCAATTTAGCCCTCAAATTTTGCTTTATCCTTGCTGGCAACATCTCGTAAAACTTCCCACGCGCTTCTTCCCCTATTGTCGTCGGAGAGTGCAGGCAACGCTCCGCGAAGAGTATCACGTTCGCGTAGTTCAACGAAAGCCCTGTTCCCCCCACCGTCGAATTGAGTTCCTCGGAACGAAATCCGGCGACGTCGTTTACTCTAATCACACTCGGAAATCGGACCAATTCCTTTTTCCCCCTTTTCGGAATCGGCCCAGATTGTGTTTCAAACTTATATTCGCCGTCGCCGCTGCCGGACTTTCGATGTCCGCCATAGAAATTCCACCTCCAGAATCTGTCTCTGAAGATTCCAGTTGGTGGGTTGTGATACGAACAACAATCCTGCTCCGGAACATACGGGCTGAAGACGGTGGAAATTCTCGCGTATATGACGCAGATGAGTCGCGTCATCATTCCGACAGCCTTCTTCTCCGACGCTTCCATTTCGAACAGAGCTTCCATAGAAGAATGAAGCTCCGCCGTGGAGAACACCAGCTTCTCCATTCTTCCGATAAGTTTAGCAACGTCGAATCGGGCGAGGCCCAAATCGGCGCACTTTTTGCTGAGTCGAGAAACAGAGGAGGCGGCATTATTCAATTCCTCGAGCCGCTCGGAACAAGCGAGATTGAGAAGAAACTCCTTATCTTTGGAATTCAAATAGGCGACACCTTGGGAGCGGACGACGACGTTCCGGAGCTTGAAAATCTCTTCGTCGGAGAGAGATCGGTAGAGAGAAATGAGGGCAGCCATGGTTTTAGCAGTGTCGAAGGAGAGGATCCCAAGGGTAGGAGGAGGGGATTTTTCATGGAAGAAGAATTGAAGTGTGTGATGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGAATGGAAATGGGGTGGCGATACTCGTGAGAAAGCCGGACATTTGGGTGGTGGCTCATGAAGACGAGGCCAGAGAGATGAGATTTGCGAGGCCGACAGAGCGGCGTTCCAATTCCGAACAGGAAAAGGAACAAACTTTGGGTCGCTCTAAAGATCAAAATATGAAAGGCACGACCAAATCAAGAGCTGTAACTAAATATTGA

Coding sequence (CDS)

ATGCAGCGTTTGCATCAGCAGCGTTGTCGGACTGGTGTCGAACCTCTGTTTTTCCATGTTCCTCTCCGACTGCCACCGCATTGTGTCGTGGGCCAACGGACCCAACCACCCCATCATGTCCTCCACCGCTTCCTTCCACCCCGCCGCAAGCGACTGCGTATCGCTGTCGCTCCCCATTTTCTCCTCTCCTCCTTTATTCATCCAATTGTTCCTTCTCAATTTAGCCCTCAAATTTTGCTTTATCCTTGCTGGCAACATCTCGTAAAACTTCCCACGCGCTTCTTCCCCTATTGTCGTCGGAGAGTGCAGGCAACGCTCCGCGAAGAGTATCACGTTCGCGTAGTTCAACGAAAGCCCTGTTCCCCCCACCGTCGAATTGAGTTCCTCGGAACGAAATCCGGCGACGTCGTTTACTCTAATCACACTCGGAAATCGGACCAATTCCTTTTTCCCCCTTTTCGGAATCGGCCCAGATTGTGTTTCAAACTTATATTCGCCGTCGCCGCTGCCGGACTTTCGATGTCCGCCATAGAAATTCCACCTCCAGAATCTGTCTCTGAAGATTCCAGTTGGTGGGTTGTGATACGAACAACAATCCTGCTCCGGAACATACGGGCTGAAGACGGTGGAAATTCTCGCGTATATGACGCAGATGAGTCGCGTCATCATTCCGACAGCCTTCTTCTCCGACGCTTCCATTTCGAACAGAGCTTCCATAGAAGAATGAAGCTCCGCCGTGGAGAACACCAGCTTCTCCATTCTTCCGATAAGTTTAGCAACGTCGAATCGGGCGAGGCCCAAATCGGCGCACTTTTTGCTGAGTCGAGAAACAGAGGAGGCGGCATTATTCAATTCCTCGAGCCGCTCGGAACAAGCGAGATTGAGAAGAAACTCCTTATCTTTGGAATTCAAATAGGCGACACCTTGGGAGCGGACGACGACGTTCCGGAGCTTGAAAATCTCTTCGTCGGAGAGAGATCGGTAGAGAGAAATGAGGGCAGCCATGGTTTTAGCAGTGTCGAAGGAGAGGATCCCAAGGGTAGGAGGAGGGGATTTTTCATGGAAGAAGAATTGAAGTGTGTGATGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGAATGGAAATGGGGTGGCGATACTCGTGAGAAAGCCGGACATTTGGGTGGTGGCTCATGAAGACGAGGCCAGAGAGATGAGATTTGCGAGGCCGACAGAGCGGCGTTCCAATTCCGAACAGGAAAAGGAACAAACTTTGGGTCGCTCTAAAGATCAAAATATGAAAGGCACGACCAAATCAAGAGCTGTAACTAAATATTGA

Protein sequence

MQRLHQQRCRTGVEPLFFHVPLRLPPHCVVGQRTQPPHHVLHRFLPPRRKRLRIAVAPHFLLSSFIHPIVPSQFSPQILLYPCWQHLVKLPTRFFPYCRRRVQATLREEYHVRVVQRKPCSPHRRIEFLGTKSGDVVYSNHTRKSDQFLFPPFRNRPRLCFKLIFAVAAAGLSMSAIEIPPPESVSEDSSWWVVIRTTILLRNIRAEDGGNSRVYDADESRHHSDSLLLRRFHFEQSFHRRMKLRRGEHQLLHSSDKFSNVESGEAQIGALFAESRNRGGGIIQFLEPLGTSEIEKKLLIFGIQIGDTLGADDDVPELENLFVGERSVERNEGSHGFSSVEGEDPKGRRRGFFMEEELKCVMEEEEEEEEEEEEGNGNGVAILVRKPDIWVVAHEDEAREMRFARPTERRSNSEQEKEQTLGRSKDQNMKGTTKSRAVTKY

Homology

The following BLAST results are available for this feature:

BLAST of CmoCh03G004250 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G004250 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G004250 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G004250 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 353..375
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 396..441
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 425..441
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 396..424

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G004250.1	CmoCh03G004250.1	mRNA