CmoCh03G003020 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G003020
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr03: 4212887 .. 4213816 (+)
RNA-Seq Expression	CmoCh03G003020
Synteny	CmoCh03G003020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGTTTTCCGATTTCCTCGGTCTTAGCATCTCTCTCTCTGTCTCTCCAATTCATTCTGGTTTCAATTTCTTTCTCTCTCTCTCTCTCTCTCTCTCCCTTTTTCTTTTCTATTCTTATCCCTCTGCCCCTTTCTTTACCTTTCCCAGTTCTTAATTAATTCGTTTTCTTTTGGGTGTTTTTTGATCTTCCCGCCCCCGATTTATCTCCGGTGACGGCGATTTCAGGTGGGAGATCCCTCGATCCGCCTTCGCCTTCTTCTTCTCTCACTTCTCTGCCATTTTCCACTATGATTTCGTATTCAGTGCATTGAAGGGGCCTCTGATCTCTCTGCTTCTCTACTTCCTTTCATCAATTCCGAGACGATAACCCTTCTCTTTCATCCCCTTCTTACAGGTAACCATCTCTCTTTCTCTTTATTTCTTTCTTTTTTTTCCATTTTCTACATTTTTTTTGTGATGATTGCGTTACTGGGTCTGATTCGATTGGGGCATTTTTTTTAAAGGAAAAGAAAATTGGGCGGATGGGGGTTGTTTTTCAAGTCTAGGGTTGGTTATTAATTCGCGTTTGTCTCATTTGATTTCTAGTTTTTGGCATTGCGTGCTTGGCGAATCGTAGGGTGGCGTTGATATTTGGATCCACGAGAGGGTGTTGTCAATACTCCGTCGAATCGAGCTGTTTGTGCATCATTGATTCCCCCTTCGATCAGATTTCTGTGGGCCTCTGTTGGAAACTTTGGAAGGCGGGTCTCTGATCTGATTTTTCTTGCATGTTAGTTTGTCACTTCTGTCATCAATTTGGAAACGGTGTTCCAGGGAAAGGCAGGAATCTGAATGTGTCGCCATTGCTAAGCCCTTCCATTATATTTCCTTGTCTTCTTCATTTCCAGGCACAGAGATTTAGGGATTCTTTTAAATATTTTGTTTGA

mRNA sequence

ATGGGTGGTTTTCCGATTTCCTCGTGCATTGAAGGGGCCTCTGATCTCTCTGCTTCTCTACTTCCTTTCATCAATTCCGAGACGATAACCCTTCTCTTTCATCCCCTTCTTACAGTTTTTGGCATTGCGTGCTTGGCGAATCGTAGGGTGGCGTTGATATTTGGATCCACGAGAGGGTGTTGTCAATACTCCGTCGAATCGAGCTGTTTGTGCATCATTGATTCCCCCTTCGATCAGATTTCTGTGGGCCTCTGTTGGAAACTTTGGAAGGCGGGGAAAGGCAGGAATCTGAATGTGTCGCCATTGCTAAGCCCTTCCATTATATTTCCTTGTCTTCTTCATTTCCAGGCACAGAGATTTAGGGATTCTTTTAAATATTTTGTTTGA

Coding sequence (CDS)

ATGGGTGGTTTTCCGATTTCCTCGTGCATTGAAGGGGCCTCTGATCTCTCTGCTTCTCTACTTCCTTTCATCAATTCCGAGACGATAACCCTTCTCTTTCATCCCCTTCTTACAGTTTTTGGCATTGCGTGCTTGGCGAATCGTAGGGTGGCGTTGATATTTGGATCCACGAGAGGGTGTTGTCAATACTCCGTCGAATCGAGCTGTTTGTGCATCATTGATTCCCCCTTCGATCAGATTTCTGTGGGCCTCTGTTGGAAACTTTGGAAGGCGGGGAAAGGCAGGAATCTGAATGTGTCGCCATTGCTAAGCCCTTCCATTATATTTCCTTGTCTTCTTCATTTCCAGGCACAGAGATTTAGGGATTCTTTTAAATATTTTGTTTGA

Protein sequence

MGGFPISSCIEGASDLSASLLPFINSETITLLFHPLLTVFGIACLANRRVALIFGSTRGCCQYSVESSCLCIIDSPFDQISVGLCWKLWKAGKGRNLNVSPLLSPSIIFPCLLHFQAQRFRDSFKYFV

Homology

[Close]

BLAST of CmoCh03G003020 vs. NCBI nr
Match: KAG6603531.1 (hypothetical protein SDJN03_04140, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.9 bits (424), Expect = 5.6e-38
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 7   SSCIEGASDLSASLLPFINSETITLLFHPLLTVFGIACLANRRVALIFGSTRGCCQYSVE 66
           S  + GASDLSA LLPFINSETITLLFHPLLTVFGIACLANRRVALIFGSTRGCCQYSVE
Sbjct: 165 SEFVTGASDLSAFLLPFINSETITLLFHPLLTVFGIACLANRRVALIFGSTRGCCQYSVE 224

Query: 67  SSCLCIIDSPFDQISVGLCWKLWKAG 93
           SSCLCIIDSPFDQISVGLCWKLWKAG
Sbjct: 225 SSCLCIIDSPFDQISVGLCWKLWKAG 250

[Close]

BLAST of CmoCh03G003020 vs. NCBI nr
Match: KAG6595551.1 (hypothetical protein SDJN03_12104, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-08
Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 13  ASDLSASLLPFINSETITLLFHPLLTVFGIACLANRRVA--LIFGSTRGCCQYSVESSCL 72
           ASDLS  LL FINSETITLLFH   T + +A LA   V   L+FGSTRG CQY +E SCL
Sbjct: 215 ASDLSVLLLRFINSETITLLFH--RTYWFLAFLAWGVVGCLLLFGSTRGSCQYILEKSCL 274

Query: 73  CIIDS 76
           CIIDS
Sbjct: 275 CIIDS 277

The following BLAST results are available for this feature:

BLAST of CmoCh03G003020 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G003020 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G003020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603531.1	5.6e-38	94.19	hypothetical protein SDJN03_04140, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6595551.1	2.1e-08	66.15	hypothetical protein SDJN03_12104, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh03G003020 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G003020.1	CmoCh03G003020.1	mRNA