CmoCh03G002510 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G002510
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ethylene-responsive transcription factor RAP2-11-like
Location	Cmo_Chr03: 3829970 .. 3830632 (-)
RNA-Seq Expression	CmoCh03G002510
Synteny	CmoCh03G002510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTAACTTCCAGTCGCCGGAGACCCACGGCGGAGCCGCTGTACCAGTGGTCAAAACAAGCAAATTCAAAGGCAAAACCAGAGGAAACAACGGCAACAAGTTCGTCGGAGTCCGGCAGCGGCCGTCGGGCAGATGGGTGGCGGAAATCAAAGACACGACAAAGAAAATCCGAATGTGGTTAGGAACATTCGAGACCGCCGAGGAAGCCGCTCGTGCCTACGATGAAGCCGCCTGTCTTCTCCGAGGTTCGAACACAAGAACTAATTTCTTCATCCCACAAATCCCCACTAATTCCCCAATCGCCTCTCGAATCCGCACCCTTTTAAACAGCAAAAAGCCCCTGGGAAATTCCTCCGCCGCCGCCTCCGCCGCCGTCCCTGCTCCAACAATTCAGGACGGTCGGATGATCGACGGAGATTATAAACCAGACATGACGAATTGTTCGGAGAAAACAGAGATGGGTTCGTGTTGTTCTTCGGATTCTTGTCGATTTGTTGATGGGTTTTGGAATTCAGAGGATTTGGAGCTTTGTGATTTTGAGAGGATGAAAGTTGAGAGGCAAATTTCAGGTTGTTTGTATGCTATGAATGGAGTTCATGAGTATATGGAGGCTGTTCATGAGGCCTCTGAATCCATTTGGGATCTTCCTCCGCTCTGA

mRNA sequence

ATGGAAATTAACTTCCAGTCGCCGGAGACCCACGGCGGAGCCGCTGTACCAGTGGTCAAAACAAGCAAATTCAAAGGCAAAACCAGAGGAAACAACGGCAACAAGTTCGTCGGAGTCCGGCAGCGGCCGTCGGGCAGATGGGTGGCGGAAATCAAAGACACGACAAAGAAAATCCGAATGTGGTTAGGAACATTCGAGACCGCCGAGGAAGCCGCTCGTGCCTACGATGAAGCCGCCTGTCTTCTCCGAGGTTCGAACACAAGAACTAATTTCTTCATCCCACAAATCCCCACTAATTCCCCAATCGCCTCTCGAATCCGCACCCTTTTAAACAGCAAAAAGCCCCTGGGAAATTCCTCCGCCGCCGCCTCCGCCGCCGTCCCTGCTCCAACAATTCAGGACGGTCGGATGATCGACGGAGATTATAAACCAGACATGACGAATTGTTCGGAGAAAACAGAGATGGGTTCGTGTTGTTCTTCGGATTCTTGTCGATTTGTTGATGGGTTTTGGAATTCAGAGGATTTGGAGCTTTGTGATTTTGAGAGGATGAAAGTTGAGAGGCAAATTTCAGGTTGTTTGTATGCTATGAATGGAGTTCATGAGTATATGGAGGCTGTTCATGAGGCCTCTGAATCCATTTGGGATCTTCCTCCGCTCTGA

Coding sequence (CDS)

ATGGAAATTAACTTCCAGTCGCCGGAGACCCACGGCGGAGCCGCTGTACCAGTGGTCAAAACAAGCAAATTCAAAGGCAAAACCAGAGGAAACAACGGCAACAAGTTCGTCGGAGTCCGGCAGCGGCCGTCGGGCAGATGGGTGGCGGAAATCAAAGACACGACAAAGAAAATCCGAATGTGGTTAGGAACATTCGAGACCGCCGAGGAAGCCGCTCGTGCCTACGATGAAGCCGCCTGTCTTCTCCGAGGTTCGAACACAAGAACTAATTTCTTCATCCCACAAATCCCCACTAATTCCCCAATCGCCTCTCGAATCCGCACCCTTTTAAACAGCAAAAAGCCCCTGGGAAATTCCTCCGCCGCCGCCTCCGCCGCCGTCCCTGCTCCAACAATTCAGGACGGTCGGATGATCGACGGAGATTATAAACCAGACATGACGAATTGTTCGGAGAAAACAGAGATGGGTTCGTGTTGTTCTTCGGATTCTTGTCGATTTGTTGATGGGTTTTGGAATTCAGAGGATTTGGAGCTTTGTGATTTTGAGAGGATGAAAGTTGAGAGGCAAATTTCAGGTTGTTTGTATGCTATGAATGGAGTTCATGAGTATATGGAGGCTGTTCATGAGGCCTCTGAATCCATTTGGGATCTTCCTCCGCTCTGA

Protein sequence

MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLGNSSAAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELCDFERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL

Homology

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BLAST of CmoCh03G002510 vs. ExPASy Swiss-Prot
Match: A0A1X9PY88 (Ethylene-responsive transcription factor ERN1 OS=Lotus japonicus OX=34305 GN=ERN1 PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.6e-59
Identity = 137/268 (51.12%), Postives = 162/268 (60.45%), Query Frame = 0


Query: 1   MEINFQSP--ETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKI 60
           MEI FQ P  + H  A     K  KFKG+ R +N NKFVGVRQRPSGRWVAEIKDTT+KI
Sbjct: 1   MEIQFQQPNLQQHQKAG---TKGGKFKGRNRNSNTNKFVGVRQRPSGRWVAEIKDTTQKI 60

Query: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLN----SKK 120
           RMWLGTFETAEEAARAYDEAACLLRGSNTRTN FI  +  +SP+ASRIR LLN    +KK
Sbjct: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTN-FITHVSLDSPLASRIRNLLNNKKGNKK 120

Query: 121 PLGNSSAAASAAVPAPT-------------------------IQDGRMIDGDYKPDMTNC 180
             G         VPAP+                         +Q+  + D  YKPD++NC
Sbjct: 121 QEGVVDVGVDVDVPAPSASTTSTSSNTSNSDKNDHNSLSSGKVQNTMLFDDAYKPDLSNC 180

Query: 181 SEKTEMGSCCSSDSCRF-----------------VDGFWNSEDLELCDFERMKVERQISG 221
            E  +     S+ S  F                  DG  ++  LEL +FERMKVERQIS 
Sbjct: 181 KEDFQSCPPQSNFSWGFGPVFDRFPIAQILDMPKTDGMIDAASLELSEFERMKVERQISA 240

[Close]

BLAST of CmoCh03G002510 vs. ExPASy Swiss-Prot
Match: A2Q5W1 (Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=ERN1 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.6e-59
Identity = 137/265 (51.70%), Postives = 163/265 (61.51%), Query Frame = 0


Query: 1   MEINFQSPETHG-GAAVPVV-KTSKFKGKTR-GNNGNKFVGVRQRPSGRWVAEIKDTTKK 60
           MEI FQ P      A + V  K  KFKG+ R  NN NKFVGVRQRPSGRWVAEIKDTT+K
Sbjct: 1   MEIQFQQPNMQNQKAGISVTNKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQK 60

Query: 61  IRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLG 120
           IRMWLGTFETAEEAARAYDEAACLLRGSNTRTN FI  +  +SP+ASRIR LLN++K   
Sbjct: 61  IRMWLGTFETAEEAARAYDEAACLLRGSNTRTN-FITHVSLDSPLASRIRNLLNNRKGDK 120

Query: 121 NSSAAASAAVPAPT-------------------------IQDGRMIDGDYKPDMTNCSEK 180
                A A+ P+ +                          ++  + +  YKPD++NC E 
Sbjct: 121 KQEDGAVASAPSNSKTTISNTSTITSNDDNKESTLSTCATRNTELFEDAYKPDLSNCKEV 180

Query: 181 TEMGSCCSSDSCRF-----------------VDGFWNSEDLELCDFERMKVERQISGCLY 221
            E GS  S+ SC F                  D   ++  LEL +FERMKVERQIS  LY
Sbjct: 181 FESGS-QSNISCGFGPFFDHFSFTQLLDMAKNDDITDASSLELSEFERMKVERQISASLY 240

[Close]

BLAST of CmoCh03G002510 vs. ExPASy Swiss-Prot
Match: A9Y0K8 (Ethylene-responsive transcription factor ERN2 OS=Medicago truncatula OX=3880 GN=ERN2 PE=1 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 8.1e-40
Identity = 122/317 (38.49%), Postives = 155/317 (48.90%), Query Frame = 0


Query: 1   MEINFQSPETHGGAAVPVVKTSKFKGKT-RGNNGNKFVGVRQRPSGRWVAEIKDTTKKIR 60
           MEI F  P+     ++   K +KFKG+  +    +KFVGVRQRPSGR+VAEIKDTT+ IR
Sbjct: 1   MEIQFDEPK----KSLRPKKVNKFKGRNKKSETRDKFVGVRQRPSGRYVAEIKDTTQNIR 60

Query: 61  MWLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKP---- 120
           MWLGTFETAEEAARAYDEAA LLRGS TRTN F+  +  +SP+ASRIR LLN++K     
Sbjct: 61  MWLGTFETAEEAARAYDEAATLLRGSKTRTN-FVTHVSYDSPLASRIRHLLNNRKKGTKQ 120

Query: 121 -------------------------------LGNSSAA---------------------- 180
                                          +G +S A                      
Sbjct: 121 QDMNGISSTTSHADTTNDTTSDGSTSSTTNCIGTASGAINSTSASGVTSTSTNISTSASG 180

Query: 181 ---------------------ASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSS 221
                                 S    + T+Q   + +  Y+PDM+N + + E  S  S+
Sbjct: 181 VASTSTDISTNSSNTNVNDKSESLLSSSTTMQKPNLFEDAYRPDMSNLTNEYESSSYKSN 240

[Close]

BLAST of CmoCh03G002510 vs. ExPASy Swiss-Prot
Match: Q6J9S1 (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702 GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.6e-35
Identity = 102/240 (42.50%), Postives = 128/240 (53.33%), Query Frame = 0


Query: 23  KFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLL 82
           K K K++GN   KFVGVRQRPSG+WVAEIKDTT+KIRMWLGTFETAEEAARAYDEAACLL
Sbjct: 10  KTKEKSKGNK-TKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLL 69

Query: 83  RGSNTRTNFFIPQIPTNSPIASRIRTLLNSK-----------KPLGN---------SSAA 142
           RGSNTRTN F    P NS ++ +IR LL+ K           KP+ +         S+A 
Sbjct: 70  RGSNTRTN-FANHFPNNSQLSLKIRNLLHQKQSMKQQQQQQHKPVSSLTDCNINYISTAT 129

Query: 143 ASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELCDFE 202
           +       T      ++  Y+PD +   +    G      S   V GF +   L     E
Sbjct: 130 SLTTTTTTTTTTAIPLNNVYRPDSSVIGQPETEGLQLPY-SWPLVSGFNHQIPLAQAGGE 189

Query: 203 R----------------MKVERQISGCLYAMNGVHEYME------AVHEASESIWDLPPL 221
                             ++ERQIS  LYAMNG + Y +      A+ + ++ IWDLP L
Sbjct: 190 THGHLNDHYSTDQHLGLAEIERQISASLYAMNGANSYYDNMNAEYAIFDPTDPIWDLPSL 246

[Close]

BLAST of CmoCh03G002510 vs. ExPASy Swiss-Prot
Match: A9Y0K9 (Ethylene-responsive transcription factor ERN3 OS=Medicago truncatula OX=3880 GN=ERN3 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-26
Identity = 76/173 (43.93%), Postives = 102/173 (58.96%), Query Frame = 0


Query: 22  SKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACL 81
           +K   K    N +KFVGVRQR SG+W AEIKDT+K IRMWLGT++TAEEAARAYDEAA L
Sbjct: 11  NKHGEKLMMKNRSKFVGVRQRASGKWAAEIKDTSKNIRMWLGTYKTAEEAARAYDEAAFL 70

Query: 82  LRGSNTRTNFFIP-QIPTNSPIASRIRTLLNSKKPLGNSSAAASAAVPAPTIQDGRMIDG 141
           LRG+NTRTNF     IPTNSPI+ +++ LL+ +K + N S + +      +   G  ID 
Sbjct: 71  LRGTNTRTNFSTTHSIPTNSPISLKLKNLLH-RKSISNLSQSKNQCTLMSSSLQGAPIDN 130

Query: 142 DYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELCDFERMKVERQISGC 194
                      + E  S CSS+  + +  FW    L + ++    V+  +  C
Sbjct: 131 SI------MVMENENKSSCSSEESKSL--FWVQNQL-VSEYNPYGVDMNMMNC 173

[Close]

BLAST of CmoCh03G002510 vs. ExPASy TrEMBL
Match: A0A6J1GGA9 (ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita moschata OX=3662 GN=LOC111453675 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.2e-124
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60
           MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLGNSS 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLGNSS
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLGNSS 120

Query: 121 AAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELCD 180
           AAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELCD
Sbjct: 121 AAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELCD 180

Query: 181 FERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL 221
           FERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL
Sbjct: 181 FERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL 220

[Close]

BLAST of CmoCh03G002510 vs. ExPASy TrEMBL
Match: A0A6J1ISK7 (ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita maxima OX=3661 GN=LOC111478312 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 3.5e-118
Identity = 209/220 (95.00%), Postives = 215/220 (97.73%), Query Frame = 0


Query: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60
           MEI+FQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEIHFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLGNSS 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQI TNSPIASRIRTLLNSKK L N +
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQISTNSPIASRIRTLLNSKKSLENPA 120

Query: 121 AAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELCD 180
           AA++AAVPAPTIQDGRM+DGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNS+DLE CD
Sbjct: 121 AASAAAVPAPTIQDGRMLDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSDDLEFCD 180

Query: 181 FERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL 221
           FERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL
Sbjct: 181 FERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL 220

[Close]

BLAST of CmoCh03G002510 vs. ExPASy TrEMBL
Match: A0A6J1EE15 (ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita moschata OX=3662 GN=LOC111432381 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 6.6e-85
Identity = 182/259 (70.27%), Postives = 192/259 (74.13%), Query Frame = 0


Query: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60
           MEI+FQSP THGGA   + K+SKFKG+TRGNN NKFVGVRQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEIHFQSPGTHGGATASLGKSSKFKGRTRGNNANKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKK-----P 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTN FIPQI TNSPIASRIR+LLNS+K     P
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTN-FIPQISTNSPIASRIRSLLNSRKNQILNP 120

Query: 121 LGNSSAAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMG------SCCSSDSCR---- 180
           L N  A   AAV AP IQDGR+ DG YKPDMTNC E+TEMG      S CSSDS R    
Sbjct: 121 LKNHPA---AAVAAPIIQDGRLFDGAYKPDMTNCLEETEMGSDFCSDSSCSSDSSRLGAS 180

Query: 181 ----FVDGF--------------------WNSEDLELCDFERMKVERQISGCLYAMNGVH 221
               FVDG                      +SEDLEL  FERMKVERQIS  LYAMNGV 
Sbjct: 181 SGGGFVDGLSMVQESMKFPVNAAALQAESEHSEDLELLAFERMKVERQISASLYAMNGVQ 240

[Close]

BLAST of CmoCh03G002510 vs. ExPASy TrEMBL
Match: A0A6J1HMY7 (ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita maxima OX=3661 GN=LOC111466085 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.2e-83
Identity = 179/262 (68.32%), Postives = 194/262 (74.05%), Query Frame = 0


Query: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60
           MEI+FQSP  HGGA   + K+SKFKG+TRG+N NKF+GVRQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEIHFQSPGIHGGATASLGKSSKFKGRTRGSNANKFLGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKK-----P 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTN FIPQI TNSPIASRIR+LLN +K     P
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTN-FIPQISTNSPIASRIRSLLNGRKNPILSP 120

Query: 121 LGN---SSAAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMG------SCCSSDSCR- 180
           L N   ++AAA+AA  AP IQDGR+ DG YKPDMTNC E+TEMG      S CSSDS R 
Sbjct: 121 LRNHPPAAAAAAAAAAAPIIQDGRLFDGAYKPDMTNCLEETEMGSDFCSDSSCSSDSSRL 180

Query: 181 -------FVDGF--------------------WNSEDLELCDFERMKVERQISGCLYAMN 221
                  FVDG                      +SEDLEL  FERMKVERQIS  LYAMN
Sbjct: 181 GASSGAGFVDGLSMVQESMKFPVNAAALQAESEHSEDLELLAFERMKVERQISASLYAMN 240

[Close]

BLAST of CmoCh03G002510 vs. ExPASy TrEMBL
Match: A0A5A7UZM7 (Ethylene-responsive transcription factor RAP2-11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00240 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.9e-79
Identity = 164/238 (68.91%), Postives = 188/238 (78.99%), Query Frame = 0


Query: 1   MEINFQSPETHGGA-AVPVVKTSKFKGKTR-GNNGNKFVGVRQRPSGRWVAEIKDTTKKI 60
           MEI+FQS E HGGA A  ++K++KFKG+ R  NNGNKFVGVRQRPSGRWVAEIKDTTKKI
Sbjct: 1   MEIDFQSSEIHGGATASSIIKSTKFKGRNRSNNNGNKFVGVRQRPSGRWVAEIKDTTKKI 60

Query: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKK---- 120
           RMWLGTFETAEEAARAYDEAACLLRGSNTRTN FIPQI TNSPIASRIR+LLN+KK    
Sbjct: 61  RMWLGTFETAEEAARAYDEAACLLRGSNTRTN-FIPQISTNSPIASRIRSLLNTKKTVNR 120

Query: 121 -----PLGNSSAAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSC--CSSDSCRF- 180
                P  + +A+A +AV  P+I+D  + +G YKPDMTNC E+ E+ SC  C S+SC   
Sbjct: 121 KPLETPTTSVAASAGSAVVGPSIKDDGLFEGAYKPDMTNCLEEREVSSCDSCCSESCELG 180

Query: 181 ----VDGFWNSEDLELCDFERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL 221
                +G  +SE+LELC FERMKVERQIS  LYA+NGV EYMEAVHEA+E IWDLPPL
Sbjct: 181 VSLAENGTVSSEELELCAFERMKVERQISASLYAINGVQEYMEAVHEANEPIWDLPPL 237

[Close]

BLAST of CmoCh03G002510 vs. NCBI nr
Match: XP_022950635.1 (ethylene-responsive transcription factor RAP2-11-like [Cucurbita moschata])

HSP 1 Score: 454.1 bits (1167), Expect = 6.7e-124
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60
           MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLGNSS 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLGNSS
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLGNSS 120

Query: 121 AAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELCD 180
           AAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELCD
Sbjct: 121 AAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELCD 180

Query: 181 FERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL 221
           FERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL
Sbjct: 181 FERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL 220

[Close]

BLAST of CmoCh03G002510 vs. NCBI nr
Match: KAG6603485.1 (Ethylene-responsive transcription factor ERN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 437.2 bits (1123), Expect = 8.5e-119
Identity = 214/221 (96.83%), Postives = 216/221 (97.74%), Query Frame = 0


Query: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60
           MEINFQSPETHGGAAVPVVKTSKFKGKT GNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTGGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLGN-S 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPL N +
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLENPA 120

Query: 121 SAAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELC 180
           +AAASAAVPAPTIQDGRM D DYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELC
Sbjct: 121 AAAASAAVPAPTIQDGRMYDADYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELC 180

Query: 181 DFERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL 221
           DFERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL
Sbjct: 181 DFERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL 221

[Close]

BLAST of CmoCh03G002510 vs. NCBI nr
Match: XP_023545037.1 (ethylene-responsive transcription factor RAP2-11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434.9 bits (1117), Expect = 4.2e-118
Identity = 212/221 (95.93%), Postives = 215/221 (97.29%), Query Frame = 0


Query: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60
           MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTT+KIRM
Sbjct: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTRKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLGN-S 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQI TNSPIASRIRTLLNSKKPL N  
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQISTNSPIASRIRTLLNSKKPLENPP 120

Query: 121 SAAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELC 180
           +AAASAAVPAPTIQDGRM DGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELC
Sbjct: 121 AAAASAAVPAPTIQDGRMFDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELC 180

Query: 181 DFERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL 221
           DFERMK ERQISGCLYAMNGVHEYMEAVHEASESIWD+PPL
Sbjct: 181 DFERMKFERQISGCLYAMNGVHEYMEAVHEASESIWDIPPL 221

[Close]

BLAST of CmoCh03G002510 vs. NCBI nr
Match: XP_022978278.1 (ethylene-responsive transcription factor RAP2-11-like [Cucurbita maxima])

HSP 1 Score: 434.1 bits (1115), Expect = 7.2e-118
Identity = 209/220 (95.00%), Postives = 215/220 (97.73%), Query Frame = 0


Query: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60
           MEI+FQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEIHFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLGNSS 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQI TNSPIASRIRTLLNSKK L N +
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQISTNSPIASRIRTLLNSKKSLENPA 120

Query: 121 AAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELCD 180
           AA++AAVPAPTIQDGRM+DGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNS+DLE CD
Sbjct: 121 AASAAAVPAPTIQDGRMLDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSDDLEFCD 180

Query: 181 FERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL 221
           FERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL
Sbjct: 181 FERMKVERQISGCLYAMNGVHEYMEAVHEASESIWDLPPL 220

[Close]

BLAST of CmoCh03G002510 vs. NCBI nr
Match: KAG7033667.1 (Ethylene-responsive transcription factor RAP2-11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 379.4 bits (973), Expect = 2.1e-101
Identity = 189/196 (96.43%), Postives = 191/196 (97.45%), Query Frame = 0


Query: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60
           MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM
Sbjct: 1   MEINFQSPETHGGAAVPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRM 60

Query: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLGN-S 120
           WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPL N +
Sbjct: 61  WLGTFETAEEAARAYDEAACLLRGSNTRTNFFIPQIPTNSPIASRIRTLLNSKKPLDNPA 120

Query: 121 SAAASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELC 180
           +AAASAAVPAPTIQDGRM D DYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELC
Sbjct: 121 AAAASAAVPAPTIQDGRMYDADYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELC 180

Query: 181 DFERMKVERQISG-CL 195
           DFERMKVERQISG CL
Sbjct: 181 DFERMKVERQISGPCL 196

[Close]

BLAST of CmoCh03G002510 vs. TAIR 10
Match: AT5G19790.1 (related to AP2 11 )

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-36
Identity = 102/240 (42.50%), Postives = 128/240 (53.33%), Query Frame = 0


Query: 23  KFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLL 82
           K K K++GN   KFVGVRQRPSG+WVAEIKDTT+KIRMWLGTFETAEEAARAYDEAACLL
Sbjct: 10  KTKEKSKGNK-TKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLL 69

Query: 83  RGSNTRTNFFIPQIPTNSPIASRIRTLLNSK-----------KPLGN---------SSAA 142
           RGSNTRTN F    P NS ++ +IR LL+ K           KP+ +         S+A 
Sbjct: 70  RGSNTRTN-FANHFPNNSQLSLKIRNLLHQKQSMKQQQQQQHKPVSSLTDCNINYISTAT 129

Query: 143 ASAAVPAPTIQDGRMIDGDYKPDMTNCSEKTEMGSCCSSDSCRFVDGFWNSEDLELCDFE 202
           +       T      ++  Y+PD +   +    G      S   V GF +   L     E
Sbjct: 130 SLTTTTTTTTTTAIPLNNVYRPDSSVIGQPETEGLQLPY-SWPLVSGFNHQIPLAQAGGE 189

Query: 203 R----------------MKVERQISGCLYAMNGVHEYME------AVHEASESIWDLPPL 221
                             ++ERQIS  LYAMNG + Y +      A+ + ++ IWDLP L
Sbjct: 190 THGHLNDHYSTDQHLGLAEIERQISASLYAMNGANSYYDNMNAEYAIFDPTDPIWDLPSL 246

[Close]

BLAST of CmoCh03G002510 vs. TAIR 10
Match: AT5G13910.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 6.9e-18
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 21  TSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAAC 80
           +SK K K     G +F+GVR+RP GR+ AEI+D T K R WLGTF+TAEEAA AYD AA 
Sbjct: 5   SSKSKKKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAAR 64

Query: 81  LLRGSNTRTNFFIPQIPTNSPIAS 105
            +RG+  RTNF    +P +S + S
Sbjct: 65  SMRGTRARTNFVYSDMPPSSSVTS 88

[Close]

BLAST of CmoCh03G002510 vs. TAIR 10
Match: AT1G28370.1 (ERF domain protein 11 )

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-16
Identity = 53/121 (43.80%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 17  PVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYD 76
           P VKT+    KT   NG ++ GVR+RP GR+ AEI+D  KK R+WLGTF+T EEAARAYD
Sbjct: 3   PTVKTAAV--KTNEGNGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYD 62

Query: 77  EAACLLRGSNTRTNFFIPQIPTN----SPIASRIRTLLNSKKPLGNSSAAASAAVPAPTI 134
           + A   RG+  +TNF    I  +    +   S+  T+ +S   L   S + S+  P P I
Sbjct: 63  KRAIEFRGAKAKTNFPCYNINAHCLSLTQSLSQSSTVESSFPNLNLGSDSVSSRFPFPKI 121

[Close]

BLAST of CmoCh03G002510 vs. TAIR 10
Match: AT4G11140.1 (cytokinin response factor 1 )

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-16
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 16  VPVVKTSKFKGKTRGNNGNKFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAY 75
           VPVV T+  +         KF GVRQRP G+W AEI+D ++++R+WLGTF+TAEEAA  Y
Sbjct: 76  VPVVVTTATR---------KFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVY 135

Query: 76  DEAACLLRGSNTRTNFFIPQIPTNSPIAS 105
           D AA  LRG N   NF  P +  N   AS
Sbjct: 136 DNAAIQLRGPNAELNFPPPPVTENVEEAS 155

[Close]

BLAST of CmoCh03G002510 vs. TAIR 10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-16
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 35  KFVGVRQRPSGRWVAEIKDTTKKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFFIP 94
           KF GVRQR  G WVAEI+    K R+WLGTFETAEEAARAYDEAA L+ G N +TNF  P
Sbjct: 6   KFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNF--P 65

Query: 95  QIPTNSPIASRIRTLLNSKKPLGNSSAAAS 125
               N+   S  +T +++   + +S++++S
Sbjct: 66  LNNNNTGETSEGKTDISASSTMSSSTSSSS 93

The following BLAST results are available for this feature:

BLAST of CmoCh03G002510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A1X9PY88	1.6e-59	51.12	Ethylene-responsive transcription factor ERN1 OS=Lotus japonicus OX=34305 GN=ERN...	[more]
A2Q5W1	4.6e-59	51.70	Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=...	[more]
A9Y0K8	8.1e-40	38.49	Ethylene-responsive transcription factor ERN2 OS=Medicago truncatula OX=3880 GN=...	[more]
Q6J9S1	1.6e-35	42.50	Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702...	[more]
A9Y0K9	1.0e-26	43.93	Ethylene-responsive transcription factor ERN3 OS=Medicago truncatula OX=3880 GN=...	[more]

BLAST of CmoCh03G002510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGA9	3.2e-124	100.00	ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1ISK7	3.5e-118	95.00	ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1EE15	6.6e-85	70.27	ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1HMY7	1.2e-83	68.32	ethylene-responsive transcription factor RAP2-11-like OS=Cucurbita maxima OX=366...	[more]
A0A5A7UZM7	1.9e-79	68.91	Ethylene-responsive transcription factor RAP2-11-like OS=Cucumis melo var. makuw...	[more]

BLAST of CmoCh03G002510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950635.1	6.7e-124	100.00	ethylene-responsive transcription factor RAP2-11-like [Cucurbita moschata]	[more]
KAG6603485.1	8.5e-119	96.83	Ethylene-responsive transcription factor ERN1, partial [Cucurbita argyrosperma s...	[more]
XP_023545037.1	4.2e-118	95.93	ethylene-responsive transcription factor RAP2-11-like [Cucurbita pepo subsp. pep...	[more]
XP_022978278.1	7.2e-118	95.00	ethylene-responsive transcription factor RAP2-11-like [Cucurbita maxima]	[more]
KAG7033667.1	2.1e-101	96.43	Ethylene-responsive transcription factor RAP2-11, partial [Cucurbita argyrosperm...	[more]

BLAST of CmoCh03G002510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19790.1	1.1e-36	42.50	related to AP2 11	[more]
AT5G13910.1	6.9e-18	53.57	Integrase-type DNA-binding superfamily protein	[more]
AT1G28370.1	1.3e-16	43.80	ERF domain protein 11	[more]
AT4G11140.1	1.3e-16	50.56	cytokinin response factor 1	[more]
AT1G15360.1	1.7e-16	51.11	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 36..47 score: 52.27 coord: 58..74 score: 70.05
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 35..98 e-value: 1.9E-35 score: 133.7
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 35..84 e-value: 3.2E-14 score: 52.9
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 35..92 score: 19.651295
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 35..91 e-value: 1.53948E-33 score: 113.135
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 34..93 e-value: 2.3E-23 score: 84.1
None	No IPR available	PANTHER	PTHR31194:SF1	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2	coord: 138..212
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 19..123
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 138..212
None	No IPR available	PANTHER	PTHR31194:SF1	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2	coord: 19..123
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 35..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G002510.1	CmoCh03G002510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity