CmoCh03G002460 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G002460
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionTransmembrane protein 18
LocationCmo_Chr03: 3806029 .. 3808959 (-)
RNA-Seq ExpressionCmoCh03G002460
SyntenyCmoCh03G002460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTCCGTCCGGCTGTCGATAATTTCATCGGTTTCTTCCACGCCATTGACTGGAAGGTAAAATTCAATCAAAATCCGTTCAGAACTCTCATCGGATTTGGTGTGTGAATTTAAATATTATTTTTATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTAATTTTGCAGGAACCTTGGTTGATGGGGTTATTAGGTTTTCATGGATTGTTGCTGATAATTACCATCTTTACCAGGAAGCACACGAACTTTCAGATGTTCTTGTTTCTTCTTGCACGTATGATTATTGCTTTTATTTGCTCATTATTCATTTATATTTTTCTGAAATGTATTAGCATTGTTCATGGATGTGCAATATTGAGATGTTTGATTGCTGTTCATATTGCATCCACTGTACTGGTAAAATAGTGAGTTCTAGTCTAGGAATCTAGGTTTGAAAACTTCACTACGCTCAGAGATGAATTCTGAGGTTCAAATATCCTTTTGCAAATGATTTGCTGCATCAAGGCTGCAATCATAGATAATTTACATTTGCAGATTGGAATTAAAGTCGGTGATCGATGTTTATGATTTCCAACCATAAAGCTTTTTTGATGCTTGTATACATGACTGTGGATACAATCCATATTCACATTTTGCATGTTGATGTGTACGTATTCATGTATTTCTTAATTGCTGGTCCTTTCATTATAGGAGAATACCCTTTTTGAATTTGTAACGGCTCAAGCCCACTACTGGCAGATATTATCCTCTTTGGATTTTTCCTTTCGAGATTTCTCTCAAGGGTTTTAAAATGCGTGTGCTAGGAAGAGGTTTCCACATCCTTATAAAAATGCTTCATTCTCCTCCCAACCAAAGTGGGATCTCACAATCCACCCCTCTTCGGGGCCCAATGTCCTCGCTACCACTCGTTCCCTCCTCCAATCGATGTGGGACCCCCTAATCCACCCCCCTTCAGGGCCCAACGTCCTTGGGTGGCACATCGCCTCGTGTCCACCCCCCTTCGGGGTTCAGCTTCCTCGCTGGCACATCGTTTGGTGTACACCCCCTTTGGGGCTCAACGTCCTTGCCGGCACACCGCCCGATGTTTGGCTCTGATGCCATTTGTAACGGCCCAAACCCATTGCAAGCAGAGATTGTCCTCTTTGGCAAAAAATTGGCATTCCAACCACCAAAAATATTCCCTTTTCTTTTTATTGTGAGATCCCACATTGGTTGGGGAGGAGAACGAAACATTATTTATAAGGGTGTGGAAACCTCCCCTAGCAGACACGTTTTAAAAAACGTTGAGAGGAAGCCCGAAAGGGAAATCCCCCTTTCATGTTTGTTGTACATTTTCCTTTGTTCACAATCATATTTTGCGAAGTCTATATGCACATTTTTTTTCATGGATTTCTCGGTGGGTTTAGGCTATTACTGCATTCTACAAAAACCCTTTCATGTTTGTTGTACATTTTCCTATGTTCACAATCATATTTTGCAAGTCTATATGCACATTTTTTTTCATGGATTTCTCAACTCCAATTGTTCTCATTTCAAGTACAAGAAAGCCTTATTTGGAGTACTTACATACTTGTATTTGTAATGCAGTAGCTGGTGTATATTTTGCTGAGAGAATCAATAGAATCTTGAGCAAAAACTGGAAGAATTTTGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCCTTTCAACACTCTGGTCTGGGCCACTGCTCGTAATTTCAATGATAATTCTGGCAAGTACTCGTTATTACTTCTTTTCCTCATGTCCCGGATGAACAACCCCATACTATCCAATTGCCCCAGGATTATTTCTCTCTCATTTGTTTGTTGTCTAGTTTTCCACGTCAAGAACACTTAACTGAACTCTCATTTCTGTATGGCAGATAAACACACTTTTCACCTTATGCTATCTAGTAGTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGACTAAAGAAGACTAATCCCAAAGGTGAAGCTTTTTTAGCTTTGATATCTTTTGCTGGTAGTTTGTAGCTGTGTATCTTATCCTTCTCAGAGATCGTTGGACCGATGCGAGTACAATGCGAAGAGCGGTTTTGTTTGTTCCCTTTTTCTTATTTATTGAATAGTCTCCATAGATATTATTGTGATCAACTTTATACAACATTCACTCACTTTTTTATGTATCTGGAATTCCTTCGCCCAGAAATATTTTGTCATTACTGATTTCATTCACTGAATGTCTTGGACTGTTATAGGACTAA

mRNA sequence

ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTCCGTCCGGCTGTCGATAATTTCATCGGTTTCTTCCACGCCATTGACTGGAAGGAACCTTGGTTGATGGGGTTATTAGTAGCTGGTGTATATTTTGCTGAGAGAATCAATAGAATCTTGAGCAAAAACTGGAAGAATTTTGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCCTTTCAACACTCTGGTCTGGGCCACTGCTCTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGACTAAAGAAGACTAATCCCAAAGGTGAAGCTTTTTTAGCTTTGATATCTTTTGCTGCTGTGTATCTTATCCTTCTCAGAGATCGTTGGACCGATGCGAGTACAATGCGAAGAGCGGACTAA

Coding sequence (CDS)

ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGATCAAATGGCGGATCTGGTTCAGAAACTTTCCTCCGAACTCCGATCTGGTCTCCGTCCGGCTGTCGATAATTTCATCGGTTTCTTCCACGCCATTGACTGGAAGGAACCTTGGTTGATGGGGTTATTAGTAGCTGGTGTATATTTTGCTGAGAGAATCAATAGAATCTTGAGCAAAAACTGGAAGAATTTTGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCCTTTCAACACTCTGGTCTGGGCCACTGCTCTCAGGTGGAAAAGAGCTGAGCTTCGAAATCGAGCACGACTTTCACAGACTAAAGAAGACTAATCCCAAAGGTGAAGCTTTTTTAGCTTTGATATCTTTTGCTGCTGTGTATCTTATCCTTCTCAGAGATCGTTGGACCGATGCGAGTACAATGCGAAGAGCGGACTAA

Protein sequence

MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLVAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLWSGPLLSGGKELSFEIEHDFHRLKKTNPKGEAFLALISFAAVYLILLRDRWTDASTMRRAD
Homology
[Close]
BLAST of CmoCh03G002460 vs. ExPASy Swiss-Prot
Match: Q641M3 (Transmembrane protein 18 OS=Danio rerio OX=7955 GN=tmem18 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-08
Identity = 30/86 (34.88%), Postives = 42/86 (48.84%), Query Frame = 0 

Query: 40  FFHAIDWKEPWLMGLL---------------------------VAGVYFAERINRILSKN 99
           F  ++DW EPWLM LL                           VA VY AE +N + + N
Sbjct: 28  FLQSVDWSEPWLMALLAFHVFCFAFTLLSCKYYRIQICHFLLMVAMVYSAEYLNELAAMN 87

[Close]
BLAST of CmoCh03G002460 vs. ExPASy Swiss-Prot
Match: Q6DGF8 (Transmembrane protein 18 OS=Rattus norvegicus OX=10116 GN=Tmem18 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 30/81 (37.04%), Postives = 38/81 (46.91%), Query Frame = 0 

Query: 45  DWKEPWLMGL---------------------------LVAGVYFAERINRILSKNWKNFA 99
           DW EPWL+GL                           LV  VY AE IN + + NW+ FA
Sbjct: 22  DWTEPWLLGLLAFHLLCLLLTCFSAQRYKLQIGHFLCLVVLVYCAEYINEVAAMNWRLFA 81

[Close]
BLAST of CmoCh03G002460 vs. ExPASy Swiss-Prot
Match: Q3SZ36 (Transmembrane protein 18 OS=Bos taurus OX=9913 GN=TMEM18 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07
Identity = 29/81 (35.80%), Postives = 38/81 (46.91%), Query Frame = 0 

Query: 45  DWKEPWLMGL---------------------------LVAGVYFAERINRILSKNWKNFA 99
           DW EPWL+GL                           LV  VY AE IN + + NW+ F+
Sbjct: 22  DWTEPWLVGLAGFHVLCLLLTCFSSQRYRLQVGHFLCLVTLVYCAEYINEVAAMNWRLFS 81

[Close]
BLAST of CmoCh03G002460 vs. ExPASy Swiss-Prot
Match: Q3TUD9 (Transmembrane protein 18 OS=Mus musculus OX=10090 GN=Tmem18 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.8e-07
Identity = 29/81 (35.80%), Postives = 38/81 (46.91%), Query Frame = 0 

Query: 45  DWKEPWLMGL---------------------------LVAGVYFAERINRILSKNWKNFA 99
           DW EPWL+GL                           LV  VY AE IN + + NW+ F+
Sbjct: 22  DWTEPWLLGLLAFHLLCLLLTCFSSQRYKLQIGHFLCLVVLVYSAEYINEVAAVNWRLFS 81

[Close]
BLAST of CmoCh03G002460 vs. ExPASy Swiss-Prot
Match: Q96B42 (Transmembrane protein 18 OS=Homo sapiens OX=9606 GN=TMEM18 PE=1 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 6.3e-07
Identity = 30/81 (37.04%), Postives = 37/81 (45.68%), Query Frame = 0 

Query: 45  DWKEPWLMGL---------------------------LVAGVYFAERINRILSKNWKNFA 99
           DW EPWLMGL                           LV  VY AE IN   + NW+ F+
Sbjct: 22  DWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHFLCLVILVYCAEYINEAAAMNWRLFS 81

[Close]
BLAST of CmoCh03G002460 vs. ExPASy TrEMBL
Match: A0A6J1ISM9 (Transmembrane protein 18 OS=Cucurbita maxima OX=3661 GN=LOC111478331 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 6.1e-45
Identity = 97/125 (77.60%), Postives = 98/125 (78.40%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL----- 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL     
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  ----------------------VAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 99
                                 +AGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

[Close]
BLAST of CmoCh03G002460 vs. ExPASy TrEMBL
Match: A0A6J1GD63 (Transmembrane protein 18 OS=Cucurbita moschata OX=3662 GN=LOC111453119 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 6.1e-45
Identity = 97/125 (77.60%), Postives = 98/125 (78.40%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL----- 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL     
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  ----------------------VAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 99
                                 +AGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

[Close]
BLAST of CmoCh03G002460 vs. ExPASy TrEMBL
Match: A0A6J1DPY2 (Transmembrane protein 18 OS=Momordica charantia OX=3673 GN=LOC111023137 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 2.0e-43
Identity = 94/125 (75.20%), Postives = 96/125 (76.80%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL----- 60
           MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNFIGFFHAI WKEPWLMGLL     
Sbjct: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFIGFFHAIGWKEPWLMGLLGFHAL 60

Query: 61  ----------------------VAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 99
                                 +AGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIVTRKRTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

[Close]
BLAST of CmoCh03G002460 vs. ExPASy TrEMBL
Match: A0A0A0LN62 (Transmembrane protein 18 OS=Cucumis sativus OX=3659 GN=Csa_2G431140 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 5.3e-41
Identity = 89/125 (71.20%), Postives = 94/125 (75.20%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL----- 60
           M+ELRS MEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWKEPWLMGLL     
Sbjct: 1   MDELRSVMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  ----------------------VAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 99
                                 +AGVYFAE IN ILSKNWKNFATQNYFDPNGVFLS LW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAEIINGILSKNWKNFATQNYFDPNGVFLSALW 120

[Close]
BLAST of CmoCh03G002460 vs. ExPASy TrEMBL
Match: A0A5A7VF36 (Transmembrane protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001270 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 9.1e-41
Identity = 88/125 (70.40%), Postives = 94/125 (75.20%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL----- 60
           M+ELRSAMEEHMDQM+DL+QKLSSELRSGLRPA+DNFIGFFHAIDWKEPWLMGLL     
Sbjct: 1   MDELRSAMEEHMDQMSDLIQKLSSELRSGLRPALDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  ----------------------VAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 99
                                 +AGVYFAE IN+ILSKNWK FATQNYFDPNGVFLS LW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLFALAGVYFAEGINKILSKNWKKFATQNYFDPNGVFLSALW 120

[Close]
BLAST of CmoCh03G002460 vs. NCBI nr
Match: KAG7033663.1 (Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-44
Identity = 97/125 (77.60%), Postives = 98/125 (78.40%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL----- 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL     
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  ----------------------VAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 99
                                 +AGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

[Close]
BLAST of CmoCh03G002460 vs. NCBI nr
Match: XP_022949841.1 (transmembrane protein 18 [Cucurbita moschata] >XP_022978303.1 transmembrane protein 18 [Cucurbita maxima] >KAG6603481.1 Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-44
Identity = 97/125 (77.60%), Postives = 98/125 (78.40%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL----- 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL     
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  ----------------------VAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 99
                                 +AGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

[Close]
BLAST of CmoCh03G002460 vs. NCBI nr
Match: XP_023543279.1 (transmembrane protein 18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.7 bits (478), Expect = 3.6e-44
Identity = 96/125 (76.80%), Postives = 98/125 (78.40%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL----- 60
           MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWL+GLL     
Sbjct: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLIGLLGFHGL 60

Query: 61  ----------------------VAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 99
                                 +AGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIFTRKHTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

[Close]
BLAST of CmoCh03G002460 vs. NCBI nr
Match: XP_038900756.1 (transmembrane protein 18 [Benincasa hispida])

HSP 1 Score: 186.0 bits (471), Expect = 2.4e-43
Identity = 92/125 (73.60%), Postives = 97/125 (77.60%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL----- 60
           MEELRSAMEEHMDQMADL+QK+SSELRSG+RPAVDNF+GFFHAIDWKEPWLMGLL     
Sbjct: 1   MEELRSAMEEHMDQMADLIQKISSELRSGIRPAVDNFVGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61  ----------------------VAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 99
                                 +AGVYFAERINRILSKNWKNFATQNYFDPNGVFLS LW
Sbjct: 61  LLIITIFTRKRTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSALW 120

[Close]
BLAST of CmoCh03G002460 vs. NCBI nr
Match: XP_022156188.1 (transmembrane protein 18 [Momordica charantia])

HSP 1 Score: 185.3 bits (469), Expect = 4.0e-43
Identity = 94/125 (75.20%), Postives = 96/125 (76.80%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL----- 60
           MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNFIGFFHAI WKEPWLMGLL     
Sbjct: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFIGFFHAIGWKEPWLMGLLGFHAL 60

Query: 61  ----------------------VAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 99
                                 +AGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW
Sbjct: 61  LLIITIVTRKRTNFQMFLFLLALAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 120

[Close]
BLAST of CmoCh03G002460 vs. TAIR 10
Match: AT1G34350.1 (unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). )

HSP 1 Score: 154.5 bits (389), Expect = 7.1e-38
Identity = 75/125 (60.00%), Postives = 89/125 (71.20%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLL----- 60
           MEE+RSAME+ +D +ADLV+KLS ELR+G +PA DNF+GFFHAIDWKEPW+MGL+     
Sbjct: 1   MEEIRSAMEKQVDLVADLVEKLSGELRTGFQPAYDNFLGFFHAIDWKEPWIMGLMAFHAL 60

Query: 61  ----------------------VAGVYFAERINRILSKNWKNFATQNYFDPNGVFLSTLW 99
                                 +AGVYFAE +NR L KNWK+F+TQNYFD NGVFLSTLW
Sbjct: 61  LLLVTLLSRRHLNFHMFLFLLALAGVYFAENLNRELRKNWKSFSTQNYFDSNGVFLSTLW 120

[Close]
BLAST of CmoCh03G002460 vs. TAIR 10
Match: AT1G34350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-35
Identity = 77/150 (51.33%), Postives = 89/150 (59.33%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGL------ 60
           MEE+RSAME+ +D +ADLV+KLS ELR+G +PA DNF+GFFHAIDWKEPW+MGL      
Sbjct: 1   MEEIRSAMEKQVDLVADLVEKLSGELRTGFQPAYDNFLGFFHAIDWKEPWIMGLMAFHAL 60

Query: 61  ----------------------------------------------LVAGVYFAERINRI 99
                                                         LVAGVYFAE +NR 
Sbjct: 61  LLLVTLLSRRHLNFHMFLFLLACKFPLKLSIYILYKKSLRSNDLTSLVAGVYFAENLNRE 120

The following BLAST results are available for this feature:
BLAST of CmoCh03G002460 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q641M33.3e-0834.88Transmembrane protein 18 OS=Danio rerio OX=7955 GN=tmem18 PE=2 SV=1[more]
Q6DGF81.7e-0737.04Transmembrane protein 18 OS=Rattus norvegicus OX=10116 GN=Tmem18 PE=2 SV=1[more]
Q3SZ363.7e-0735.80Transmembrane protein 18 OS=Bos taurus OX=9913 GN=TMEM18 PE=2 SV=1[more]
Q3TUD94.8e-0735.80Transmembrane protein 18 OS=Mus musculus OX=10090 GN=Tmem18 PE=2 SV=1[more]
Q96B426.3e-0737.04Transmembrane protein 18 OS=Homo sapiens OX=9606 GN=TMEM18 PE=1 SV=2[more]
BLAST of CmoCh03G002460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ISM96.1e-4577.60Transmembrane protein 18 OS=Cucurbita maxima OX=3661 GN=LOC111478331 PE=3 SV=1[more]
A0A6J1GD636.1e-4577.60Transmembrane protein 18 OS=Cucurbita moschata OX=3662 GN=LOC111453119 PE=3 SV=1[more]
A0A6J1DPY22.0e-4375.20Transmembrane protein 18 OS=Momordica charantia OX=3673 GN=LOC111023137 PE=3 SV=... [more]
A0A0A0LN625.3e-4171.20Transmembrane protein 18 OS=Cucumis sativus OX=3659 GN=Csa_2G431140 PE=3 SV=1[more]
A0A5A7VF369.1e-4170.40Transmembrane protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
BLAST of CmoCh03G002460 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033663.11.3e-4477.60Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022949841.11.3e-4477.60transmembrane protein 18 [Cucurbita moschata] >XP_022978303.1 transmembrane prot... [more]
XP_023543279.13.6e-4476.80transmembrane protein 18 [Cucurbita pepo subsp. pepo][more]
XP_038900756.12.4e-4373.60transmembrane protein 18 [Benincasa hispida][more]
XP_022156188.14.0e-4375.20transmembrane protein 18 [Momordica charantia][more]
BLAST of CmoCh03G002460 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G34350.17.1e-3860.00unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; B... [more]
AT1G34350.21.5e-3551.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..21
NoneNo IPR availablePANTHERPTHR22593TRANSMEMBRANE PROTEIN 18coord: 1..55
NoneNo IPR availablePANTHERPTHR22593:SF2TRANSMEMBRANE PROTEIN 18coord: 55..98
NoneNo IPR availablePANTHERPTHR22593:SF2TRANSMEMBRANE PROTEIN 18coord: 1..55
NoneNo IPR availablePANTHERPTHR22593TRANSMEMBRANE PROTEIN 18coord: 55..98
IPR026721Transmembrane protein 18PFAMPF14770TMEM18coord: 55..98
e-value: 9.7E-16
score: 57.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G002460.1CmoCh03G002460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000902 cell morphogenesis
biological_process GO:0009987 cellular process
biological_process GO:0009856 pollination
cellular_component GO:0031965 nuclear membrane