CmoCh03G002330 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G002330
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic
Location	Cmo_Chr03: 3601989 .. 3602352 (+)
RNA-Seq Expression	CmoCh03G002330
Synteny	CmoCh03G002330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCTATGGTAACTGGGTTCATGAATTATGGTCAACAAACAGTACGAGCTATAAGGTACATTGGTCAGGGTTTCATGATTACTTTATCCCATGCAAATCGTTTGCCTGTAACTATTCAATATCCTTACGAAAAATTAATCGCATCGGAGCGTTTCCACGGTTGAGTCCATTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTATAGATCTCCCCGTTGTTGATTGAAAATTGGAAACGGATATTCGAAAGAAACGATTGCTTAATTACAGTATTGATTTCGAGATCTGTATATTTTGTAGTAACTGCATTGAATATTGTCAAACAAATTATTTATCAATGA

mRNA sequence

ATGATCCCTATGGTAACTGGGTTCATGAATTATGGTCAACAAACAGTACGAGCTATAAGGTACATTGGTCAGGGTTTCATGATTACTTTATCCCATGCAAATCGTTTGCCTATCTCCCCGTTGTTGATTGAAAATTGGAAACGGATATTCGAAAGAAACGATTGCTTAATTACAGTATTGATTTCGAGATCTGTATATTTTGTAGTAACTGCATTGAATATTGTCAAACAAATTATTTATCAATGA

Coding sequence (CDS)

ATGATCCCTATGGTAACTGGGTTCATGAATTATGGTCAACAAACAGTACGAGCTATAAGGTACATTGGTCAGGGTTTCATGATTACTTTATCCCATGCAAATCGTTTGCCTATCTCCCCGTTGTTGATTGAAAATTGGAAACGGATATTCGAAAGAAACGATTGCTTAATTACAGTATTGATTTCGAGATCTGTATATTTTGTAGTAACTGCATTGAATATTGTCAAACAAATTATTTATCAATGA

Protein sequence

MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPISPLLIENWKRIFERNDCLITVLISRSVYFVVTALNIVKQIIYQ

Homology

[Close]

BLAST of CmoCh03G002330 vs. ExPASy Swiss-Prot
Match: Q49KU4 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ndhI PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 8.2e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYGQQTVRA RYIGQGFMITLSHANRLP++
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. ExPASy Swiss-Prot
Match: Q9MTH8 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Oenothera elata subsp. hookeri OX=85636 GN=ndhI PE=3 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 8.2e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYGQQTVRA RYIGQGFMITLSHANRLP++
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFMITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. ExPASy Swiss-Prot
Match: Q2QD37 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhI PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-13
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYGQQTVRA RYIGQGF+ITLSHANRLP++
Sbjct: 1  MFPMVTGFMNYGQQTVRAARYIGQGFVITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. ExPASy Swiss-Prot
Match: Q09FZ2 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Platanus occidentalis OX=4403 GN=ndhI PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-13
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M+PMVTGFMNYGQQTVRA RYIGQ FMITLSHANRLP++
Sbjct: 1  MLPMVTGFMNYGQQTVRAARYIGQSFMITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. ExPASy Swiss-Prot
Match: A0ZZ89 (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Gossypium barbadense OX=3634 GN=ndhI PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-13
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M PMVTGFMNYG QTVRA RYIGQGFMITLSHANRLP++
Sbjct: 1  MFPMVTGFMNYGHQTVRAARYIGQGFMITLSHANRLPVT 39

[Close]

BLAST of CmoCh03G002330 vs. ExPASy TrEMBL
Match: A0A5D2NCE8 (4Fe-4S ferredoxin-type domain-containing protein (Fragment) OS=Gossypium tomentosum OX=34277 GN=ES332_A11G202900v1 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-15
Identity = 58/120 (48.33%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 1   MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS--------------------- 60
           M  MVTGFMNYG QT+ A RYIGQGFMITLSHANRLP++                     
Sbjct: 1   MFLMVTGFMNYGHQTILAARYIGQGFMITLSHANRLPVTIQYPYEKLITSEHFCGRIHFE 60

Query: 61  ----------------PLLIENWK--RIFERNDCLITVLISRSVYFVVTALNIVKQIIYQ 82
                            L I  WK      +NDCLITVLIS  VYFVVTAL+IV+Q  YQ
Sbjct: 61  FDECIACEVCVRVCPINLPIVGWKFETDIRKNDCLITVLISEFVYFVVTALSIVQQFFYQ 120

[Close]

BLAST of CmoCh03G002330 vs. ExPASy TrEMBL
Match: A0A5J5TSL8 (4Fe-4S ferredoxin-type domain-containing protein (Fragment) OS=Gossypium barbadense OX=3634 GN=ES319_A11G190700v1 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.9e-15
Identity = 57/120 (47.50%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 1   MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS--------------------- 60
           M  MVTGFMNYG QT+ A RYIGQGFMITLSH NRLP++                     
Sbjct: 1   MFLMVTGFMNYGHQTILAARYIGQGFMITLSHTNRLPVTIQYPYEKLITSERFCGRIHFE 60

Query: 61  ----------------PLLIENWK--RIFERNDCLITVLISRSVYFVVTALNIVKQIIYQ 82
                            L I  WK      +NDCLITVLIS  VYFVVTAL+IV+Q  YQ
Sbjct: 61  FDECIACEVCVRVCPINLPIVGWKFETDIRKNDCLITVLISEFVYFVVTALSIVQQFFYQ 120

[Close]

BLAST of CmoCh03G002330 vs. ExPASy TrEMBL
Match: A0A5D2X811 (4Fe-4S ferredoxin-type domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A11G193800v1 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 56/104 (53.85%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 1   MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS-----PLLIENWK---RI-FE 60
           M  MVTGFMNYG QT+ A RYIGQGFMITLSHANRLP++       LI + +   RI FE
Sbjct: 1   MFLMVTGFMNYGHQTILAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFCGRIHFE 60

Query: 61  RNDCL--------------ITVLISRSVYFVVTALNIVKQIIYQ 82
            ++C+              I VLIS  VYFVVTAL+IV+Q  YQ
Sbjct: 61  FDECIACEVCVRVCPINLPIVVLISEFVYFVVTALSIVQQFFYQ 104

[Close]

BLAST of CmoCh03G002330 vs. ExPASy TrEMBL
Match: A0A287E8T0 (4Fe-4S ferredoxin-type domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.4e-13
Identity = 49/120 (40.83%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 1   MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS--------------------- 60
           M PMVTGFM+YGQQT+RA RYIGQ F+ TLSH NRLPI+                     
Sbjct: 3   MFPMVTGFMSYGQQTIRATRYIGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFE 62

Query: 61  ------------------PLLIENWKRIFERNDCLITVLISRSVYFVVTALNIVKQIIYQ 82
                             P++   +++  +RN+CLI VLIS  VYFV   L+ V+Q +YQ
Sbjct: 63  FDKCIACEVCVRVCPIDLPVVDWRFEKDIKRNNCLIIVLISEFVYFVAIVLSTVQQAVYQ 122

[Close]

BLAST of CmoCh03G002330 vs. ExPASy TrEMBL
Match: A0A0D2MAX1 (4Fe-4S ferredoxin-type domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_002G166200 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.7e-12
Identity = 51/120 (42.50%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 1   MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS--------------------- 60
           M PMVT F+NYG Q VRA RY+GQGFMITLSH N LP++                     
Sbjct: 1   MFPMVTRFINYGHQIVRAARYVGQGFMITLSHVNCLPVTIQYPYENLITSEHFRRRIHFE 60

Query: 61  ----------------PLLIENWK--RIFERNDCLITVLISRSVYFVVTALNIVKQIIYQ 82
                            L +  WK  R  ++N CLITVLIS+ V+FVV  L+IV+Q  YQ
Sbjct: 61  IDKCIACEVCVRVCPIDLPVVGWKFERDIQKNYCLITVLISKFVHFVVIVLSIVQQFFYQ 120

[Close]

BLAST of CmoCh03G002330 vs. NCBI nr
Match: CAF1752597.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 56/121 (46.28%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 1   MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS--------------------- 60
           M+PM+TGFMNYGQQT+RA RYIGQGFMITLSH NRLP++                     
Sbjct: 1   MLPMITGFMNYGQQTLRAARYIGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFE 60

Query: 61  ----------------PLLIENWK---RIFERNDCLITVLISRSVYFVVTALNIVKQIIY 82
                            L + +WK    I ++NDCLITVLI   VYFVV  L+IV+QI+ 
Sbjct: 61  FDKCIACEVCVRVCPIDLPVVDWKLETNIRKKNDCLITVLILEFVYFVVIVLSIVQQIVC 120

[Close]

BLAST of CmoCh03G002330 vs. NCBI nr
Match: TYI01472.1 (hypothetical protein ES332_A11G202900v1, partial [Gossypium tomentosum])

HSP 1 Score: 91.3 bits (225), Expect = 4.2e-15
Identity = 58/120 (48.33%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 1   MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS--------------------- 60
           M  MVTGFMNYG QT+ A RYIGQGFMITLSHANRLP++                     
Sbjct: 1   MFLMVTGFMNYGHQTILAARYIGQGFMITLSHANRLPVTIQYPYEKLITSEHFCGRIHFE 60

Query: 61  ----------------PLLIENWK--RIFERNDCLITVLISRSVYFVVTALNIVKQIIYQ 82
                            L I  WK      +NDCLITVLIS  VYFVVTAL+IV+Q  YQ
Sbjct: 61  FDECIACEVCVRVCPINLPIVGWKFETDIRKNDCLITVLISEFVYFVVTALSIVQQFFYQ 120

[Close]

BLAST of CmoCh03G002330 vs. NCBI nr
Match: KAG4175348.1 (hypothetical protein ERO13_A11G178850v2, partial [Gossypium hirsutum])

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-14
Identity = 57/120 (47.50%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 1   MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS--------------------- 60
           M  M TGFMNYG QT+ A RYIGQGFMITLSHANRLP++                     
Sbjct: 24  MFLMATGFMNYGHQTILAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFCGRIHFE 83

Query: 61  ----------------PLLIENWK--RIFERNDCLITVLISRSVYFVVTALNIVKQIIYQ 82
                            L I  WK      +NDCLITVLIS  VYFVVTAL+IV+Q  YQ
Sbjct: 84  FDECIACEVCVRVCPINLPIVGWKFETDIRKNDCLITVLISEFVYFVVTALSIVQQFFYQ 143

[Close]

BLAST of CmoCh03G002330 vs. NCBI nr
Match: KAB2057784.1 (hypothetical protein ES319_A11G190700v1, partial [Gossypium barbadense])

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-14
Identity = 57/120 (47.50%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 1   MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS--------------------- 60
           M  MVTGFMNYG QT+ A RYIGQGFMITLSH NRLP++                     
Sbjct: 1   MFLMVTGFMNYGHQTILAARYIGQGFMITLSHTNRLPVTIQYPYEKLITSERFCGRIHFE 60

Query: 61  ----------------PLLIENWK--RIFERNDCLITVLISRSVYFVVTALNIVKQIIYQ 82
                            L I  WK      +NDCLITVLIS  VYFVVTAL+IV+Q  YQ
Sbjct: 61  FDECIACEVCVRVCPINLPIVGWKFETDIRKNDCLITVLISEFVYFVVTALSIVQQFFYQ 120

[Close]

BLAST of CmoCh03G002330 vs. NCBI nr
Match: KAG4123571.1 (hypothetical protein ERO13_D11G334051v2 [Gossypium hirsutum])

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 55/120 (45.83%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 1   MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS--------------------- 60
           M PMVTGFMNYG QTVRA RYIGQGFMITLSHANRLP++                     
Sbjct: 1   MFPMVTGFMNYGHQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFCGRIHFE 60

Query: 61  ----------------PLLIENWK--RIFERNDCLITVLISRSVYFVVTALNIVKQIIYQ 82
                            L + +WK      +   L  +LIS  VYFVVTAL+IV+QI+YQ
Sbjct: 61  FDKCIACEVCVRVCPIDLPVVDWKFETDIRKKRLLNYILISEFVYFVVTALSIVQQIVYQ 120

[Close]

BLAST of CmoCh03G002330 vs. TAIR 10
Match: ATCG01090.1 (NADPH dehydrogenases )

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-14
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  MIPMVTGFMNYGQQTVRAIRYIGQGFMITLSHANRLPIS 40
          M+PM+TGFMNYGQQT+RA RYIGQGFMITLSH NRLP++
Sbjct: 1  MLPMITGFMNYGQQTLRAARYIGQGFMITLSHTNRLPVT 39

The following BLAST results are available for this feature:

BLAST of CmoCh03G002330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q49KU4	8.2e-14	89.74	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Eucalyptus globulus s...	[more]
Q9MTH8	8.2e-14	89.74	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Oenothera elata subsp...	[more]
Q2QD37	2.4e-13	87.18	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q09FZ2	2.4e-13	87.18	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Platanus occidentalis...	[more]
A0ZZ89	3.1e-13	87.18	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Gossypium barbadense ...	[more]

BLAST of CmoCh03G002330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2NCE8	2.0e-15	48.33	4Fe-4S ferredoxin-type domain-containing protein (Fragment) OS=Gossypium tomento...	[more]
A0A5J5TSL8	5.9e-15	47.50	4Fe-4S ferredoxin-type domain-containing protein (Fragment) OS=Gossypium barbade...	[more]
A0A5D2X811	1.5e-13	53.85	4Fe-4S ferredoxin-type domain-containing protein OS=Gossypium mustelinum OX=3427...	[more]
A0A287E8T0	9.4e-13	40.83	4Fe-4S ferredoxin-type domain-containing protein OS=Hordeum vulgare subsp. vulga...	[more]
A0A0D2MAX1	2.7e-12	42.50	4Fe-4S ferredoxin-type domain-containing protein OS=Gossypium raimondii OX=29730...	[more]

BLAST of CmoCh03G002330 vs. NCBI nr


Match Name	E-value	Identity	Description
CAF1752597.1	1.1e-15	46.28	unnamed protein product [Brassica napus]	[more]
TYI01472.1	4.2e-15	48.33	hypothetical protein ES332_A11G202900v1, partial [Gossypium tomentosum]	[more]
KAG4175348.1	1.2e-14	47.50	hypothetical protein ERO13_A11G178850v2, partial [Gossypium hirsutum]	[more]
KAB2057784.1	1.2e-14	47.50	hypothetical protein ES319_A11G190700v1, partial [Gossypium barbadense]	[more]
KAG4123571.1	1.3e-13	45.83	hypothetical protein ERO13_D11G334051v2 [Gossypium hirsutum]	[more]

BLAST of CmoCh03G002330 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01090.1	2.9e-14	82.05	NADPH dehydrogenases	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47275:SF3	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT I, CHLOROPLASTIC	coord: 1..39
IPR004497	NADH-plastoquinone oxidoreductase, subunit I	PANTHER	PTHR47275	FAMILY NOT NAMED	coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G002330.1	CmoCh03G002330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding