CmoCh03G001890 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G001890
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr03: 3222108 .. 3222389 (-)
RNA-Seq ExpressionCmoCh03G001890
SyntenyCmoCh03G001890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCTGTAACAAGAACAGAAAGATTTCAGTTCCTATCAGTTTTCACTTTTCATTCAAAGGCCAAACAACAACTGGTTCGAATCTCTCCCTCTCTACTACAGGACATTCACCACAAAAAATATCAAGCAATCCCATCAATCCTTCTCTCTTACTTTCTATCTTCACCAACGTGGTGATTGCCGATTTCCACTTCGCTCATATATTCTACACCAGAAAGCCGGATTCCCACCGAACGGAGCTGAACTCTTGGATTTCCTTCTTCCTGACTCGTGAGTGA

mRNA sequence

ATGGATTTCTGTAACAAGAACAGAAAGATTTCAGTTCCTATCAGTTTTCACTTTTCATTCAAAGGCCAAACAACAACTGGTTCGAATCTCTCCCTCTCTACTACAGGACATTCACCACAAAAAATATCAAGCAATCCCATCAATCCTTCTCTCTTACTTTCTATCTTCACCAACGTGGTGATTGCCGATTTCCACTTCGCTCATATATTCTACACCAGAAAGCCGGATTCCCACCGAACGGAGCTGAACTCTTGGATTTCCTTCTTCCTGACTCGTGAGTGA

Coding sequence (CDS)

ATGGATTTCTGTAACAAGAACAGAAAGATTTCAGTTCCTATCAGTTTTCACTTTTCATTCAAAGGCCAAACAACAACTGGTTCGAATCTCTCCCTCTCTACTACAGGACATTCACCACAAAAAATATCAAGCAATCCCATCAATCCTTCTCTCTTACTTTCTATCTTCACCAACGTGGTGATTGCCGATTTCCACTTCGCTCATATATTCTACACCAGAAAGCCGGATTCCCACCGAACGGAGCTGAACTCTTGGATTTCCTTCTTCCTGACTCGTGAGTGA

Protein sequence

MDFCNKNRKISVPISFHFSFKGQTTTGSNLSLSTTGHSPQKISSNPINPSLLLSIFTNVVIADFHFAHIFYTRKPDSHRTELNSWISFFLTRE
Homology
[Close]
BLAST of CmoCh03G001890 vs. NCBI nr
Match: KAG6603420.1 (4-alpha-glucanotransferase DPE2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.1 bits (479), Expect = 1.7e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MDFCNKNRKISVPISFHFSFKGQTTTGSNLSLSTTGHSPQKISSNPINPSLLLSIFTNVV 60
          MDFCNKNRKISVPISFHFSFKGQTTTGSNLSLSTTGHSPQKISSNPINPSLLLSIFTNVV
Sbjct: 1  MDFCNKNRKISVPISFHFSFKGQTTTGSNLSLSTTGHSPQKISSNPINPSLLLSIFTNVV 60

Query: 61 IADFHFAHIFYTRKPDSHRTELNSWISFFLTR 93
          IADFHFAHIFYTRKPDSHRTELNSWISFFLTR
Sbjct: 61 IADFHFAHIFYTRKPDSHRTELNSWISFFLTR 92

The following BLAST results are available for this feature:
BLAST of CmoCh03G001890 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G001890 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh03G001890 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6603420.11.7e-44100.004-alpha-glucanotransferase DPE2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmoCh03G001890 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G001890.1CmoCh03G001890.1mRNA