CmoCh03G001620 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh03G001620
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionIntegrase catalytic domain-containing protein
LocationCmo_Chr03: 2284712 .. 2294546 (-)
RNA-Seq ExpressionCmoCh03G001620
SyntenyCmoCh03G001620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACGGCTGCCCATGTGATCAACAAGCTTCCCCAGCCAAGGCTAGGGTTTGTCTCACCATTTGAGATACTATGGGACATGAAACCTACAGTTAGCTACTTCCGAGTATTTGATTGTGTTTGCTATGTATTTGTGCCTGACCATCTACGTAGCAAGTTTGACAAGAAAGCAGTCAAGTGCATATTTGTCGGATATGATAATCAAAGAAAAGGGTGGAAGTGTTGTGATCCTACAAGTGAAAAATGCTATACATCAAGAGATGTAGTTTTCGATGAAGCATCTACATGGTGGTCCTCGGAGAAGAAGGTTCTACCAGATCTAAATAACATCGAAGAAATTCTACAATAGAAGATGGGGGAGCAAATTACACACACTCAGCCAAATGTTGATGTATCTAAAGACTCAGTGACATTGATGTCGATGAGGAAGAAATGATTCAATCAAGCGAATCTGTTGAAAAGGAAACGTCACATCAACAACTTAGGCGATAAAAAAGAATCCAAAAGCCCAATCTTAAGTATGTCAATGCAGTTATTGTAGAAGACGGAGTTCATGAGCCAGAGACATATGAAGAAGCATCAAAAAACTCAGCTAGGCAGAAAGTAATGGAGGAAGAAACTATAGCCCTAGAACATAATCAAATTTGGGAACTAGTACCAAGACTAGGAGATGTCAAACCCATCTCTTGCAAGTGGGTCTACAAAATAAAGCGTCGACCGGATGGATCAATCAAGAGGTACAAGGCTCGACTTGTAGCTCGAGGATTTTCTCAACAATATGCATTAGACTATGATGAAACATTCAGTCCAGTGGCAAAGATCACTACCATACGAGTTCTGCTAGCACTCGCAGCAAGTAAAGATTAGAAACTGTGGCAGTTGGACGTGAAGAATGCTTTCTTGCACGGAGAGTTAAACAGGGAGATCTACATGAACCAACCAAAAGGATTTGAGAGTGCAACTAATCCTAATCACGTATGCAAGCTTAGAATAGCTCTTTATGGGTTGAAGCAAGCACCAAGAGCTTGGTATGGTAAGATTGCTGAATTTCTTACCCAAAGTGGTTATTCAGTTGCACATGCAGACTCAAGCTTGTTTATCAAAGAAAGAGAAGGAAAATTGGCAATTGTATTGGTGTATGTGGACGATTTGATTATCACCTGAGATGAAGAAAAAGAAATTCATCAAACAAGAGAAAATTTATCAGTACGTTTCCAAATGAAAGAGCTAAGAGAGCTTAAACACTTTTTAGGCCTAAAAGTTGATCGCACAGATGAAGGATTGTTTCTCTACCAACAAAAGTATACAAGAGATATGCTTCAGAAGTTTAACATGTTAGAATGCAAACAAGCTTCAACACCGATAGAGACAAATGTCAAGATCTGTGCACATGAAGGCAAAAGTTGAACGATGAAACGACATACCGACAACTGGTAGGAAGTCTTATCTACCTAACTTTAACTCGACCTGATATTTCTTATGCAGTTGGAGTCATGAATCGGTACATGTAAAATCCAAAGAAGCCTCATCTGGATGCGGCTCGACGGATCTTGAGATATGTCGAAGGTACAATCAACTATGGTCTTCTGTACAAAAGAAGCAAAGACTGCAAGCTAGTTGGATACTGTGATGCTGATTATGCAGGAGACCACGATACTCGAAGATCAACCACTGGGTATGTGTTCAAGTTGGGTTCGGGAACAATTTCTTGGTGTAGCAAAAGACAACCAACAGTATCGTTGTCAACTATAAAAGCAGAGTATAGAGCAGCAGCTGAGCAGCTCAGGAAAGTACGTGGTTGAAACTCTTGATGGAAGATTTACACTAGAGAATTGACTATCCAATATCACTTCATTGCGACAACCAATCTGCGATTCGCCTAGCAGAAAATCCGGTGTTTCATGCTAGAACAAAGCATGTAGAGGTACACTACCATTTCATTAGAGAGAAAGTCCTGAAGGAAGAAATCGAGATGCAACAGATCAAGACAGATGATCAAGTGGCAGACTTGTTTACAAAAGGGCTGAATACTGGCAAATATGAGAGTCTTCGCTGTCAGCTCAACATGGTGCAGCGAAGATTAATGCTGAGGGGGAGTCTTAAAATATTATCACTAGCCCAATAGGTTAAGCCCAACCATTGTATGAGTAATTATATTTATGATTTAGGATTTTAGGAATAAAGGTGAGAAATGATTTAGGGATTTTAGGAATAAAGTTTAGGAAAATAATTTAGGTATTTTAGGAAAAACATTGAGAAATTTTAGGAATAGATTGACTACCATCTAGTATAAATAACTCCTCACCCTACTTAGTTCATCATCCCAAGAAATACCAAGCAACACAAAGTTGTGGTTTCTACAAAGTGTCTTGTACTCTCTTCTCGATTGGTCTTAATAAAGTGTGCGAGTGTTTCCCATAGAGAGTTGTGTTCAACACGCTCTACATCTATAAAGAATGTTAGCTACCACTCAAGGATAATGGACCGAGATTTTCAAACTCAAAAAACTCAAGAAATTCCTAAACTTCCCACGGTACAACATGTTCATGACTTAGACTACATCGCTTGGAATGTAACAAACCTTGGATGTAGGTATTCAGACTATGCCATTTGAAACGCATGAAACCTTAGGCATATGTTTTCATATTGTATCGCAAGGAATGCATGAAGCCTTTGATGCGGGTTCAGACTACATCACTTGTACAACACAGGTTGTCAAGTTCATGCCTTGTACAGTAAATCCGAGGGGAGTGTTTGGACAAGAATAGAACAAGAACATAGAAAGTAACCAAGAATAAGACAACGATTAAGAAATAGAACATGAATCAAGATCCAAGTTTTAAAGACAAGAACTCAGAACCACAGTACTAAAGCCCTTAGACCTTAGAATTCCAAGGAACTGCCCTTAGATCTCTGATCCTAAGGATCAAGGTTATCAAAATAGATCATGATAAGAACTCACAAGTCAAGAACATATCAAAAGGGCCCAAATACTTGCAACAAGATGAGAACGAGTGTGGTACCCTAGCATTATCAAGGACACAATTAAGAGCCTACAAGTAGACTACTTATTGAGTCTTTGTACTCCATGTTTTTCAGGTAAATAAAAATCCGGTCGAGGTTAGGAGCGGACTTTGGAGCAGGTACCATAGACAAGCCTCACTCCTCAACCCTTTTATTTTAAATATTTTGTGTGTTTAACTACTTTGGCATAAACTCTATTTTGATATAATATAAATATATTGTATATTATGTTTTAAATTCTCTTTGTTTGTTTCGCGAAACATTTGGCCATCTTTTTACATCATCGAGTCAACCTAAAAGTTGAGGTCAGGTCCATGCCTTATAGGTCGCATATGGATTTGGGCTACGGGTAGCATATGGGTTTAGGTCGATAAGGCGGGTTTAGGCAGGTTCGGCTAGTAATGGGTTTTTGGTCGTGGGTGTTTGGACCTTGGACCAAGTAAAGACACGTAGACCGATCGAGGTTTTGGGCTAGGCTTGAGCAAAATTTCAAGGATAGCCGTCCGAAGCTAACTTCGGGTCGGGTCTATAGTCTACGGAGGCTCAAGATCGGAGTTTTTGTTCGGATTCCAAGCCTCATAAATGAGATTGTTTCAAAAATCAAAGTTGGTTAATTATTAGTTGATTAACAATCCAATGATACTTTATAAACTATTATATTACCTTTAACAATTCAAACACTACGAATAATAAGAGAAAGTTGAAGGAGAAATCGTTACGGATCGAAAAGAAGAAAAAGACTAATTGCGTATACGTTAAGAATACAAACTTAAAATTATTATTATTCGTTAGAAGAAAACAAAAGGTTAATGATTTATTTTTGCCTTTTTGCCTTTTTGCCCCCACATAAATTTTATTTTCCTTTCTTCTCCCAAAAGAAACAACAAATGACTAAAATTATGAACTCGAGACTTGATTAAATAAACTTTTGATGAAGAAATTTGGGGAAAAGGAGATGATGAGTCTCACTTTTTTGAAATTTGGCATCCTCAAAAGAAAATTGTGTTCTACATTCATCCTCTATTAAAAAAGAAAAGGAGAGAGAATATGAGAAACAAAACAAAAGCCAATCGTCCTATCCCCATTCCATGTCCAAATTCGTATCACATTCATATATATCCTTTCTCATATAAAATGAAGTGAATCGACTTTATAGTTTTGAAAGTATAACGGCTTAGGCCTAAGCCTATCACTCGCAGATATTATCCTATTTGGACTTTTCCTTTCGAGCTTCAACTCAAGACTTTAAAACGCGTATGTTAGGGAAAAGTTTCCACACCCTTATAAAAGATATTTCGTTTTCCTCCCCAACCAATGTGGGATATGACCGAATGACTTTTATTTGTCTATAGAATTTGAAAATGAATTCAATAGTTCCTTTTGAAAGATAAAATTATTGTAAAGAAATGACGAGAAAACTATGAGAAAAAAAAGTTTGAAAAGATAGAGCATTTGAAGCATTCCAATGAAAAGTTCATTTGCCTCAAAAATGTCATTTTCAGCAACACGTATATTCCTCCTTTGATTTATAATCGACTTAATCTAAACTCAAACAAACCAATTTTCATAGTTGTACGACCTTATTTTTCTCTATCATAATACATATATTGTTACATGCATGGCATGACGGTTAAGTGTGAAAATATTCATTTAAAATATTTTATCAACGATGTCATGACTTAAACGTTCGTTATAATTTTTTTAAAACAATATAGCATAAAATAAATAACATGAAATTTTAAATCATATAAAAAAAGGAATAAAACTATACTATGATCTAATTTAAGGGCTACAAACAACATGAATACATCTAGCTTAGCATTCATGCTCATCAAATTCTTCTTCTAATTTAGTGGCCTCAATATTATTAACTATTGTTATTAGAGTGTAAGGACCTTTACTAACATTTAACTACAAATGAATAATCAATCGATTGCAAATAAATTTTAATTCTAGCTCTCCAATATGTATAATTTGTTCTATCAAAATAAGGGGCTAGAGGTTGATTGTCCTTTCACTATTTTTAATACGTAGGTTTGTCATCAGCTCAAACAATAAAGTTTATATAAAAAATCTATAAGAGCAACCCGCTCTGATACCAATTGTTGGATCGGTGTGGCAACTCTAGAGGGAGGTAAATAGGTTTTAACGATAAAAGTATTTAAGCGTGATTATTTATCTAATTATGAAACTTTTTACAAATAAGTAAATATGATAATTACTATAACAAAATAATTCAAGTCAAAACAATAATCAACTAGAACATGCAATAAATCACCATAATAATTTTGAAATTAAATAGGAAAGAGTTAGAAAATATGACACGTAATTTTATAGTGGTTCGGTCAACTCGATCGATTCCACTCCCCAAACGTCTTTTGGAAATTTGAATAAAGAACCTTCTCGACTCTTTCCACAGATCAGAGCCAAACCGCTATGCCGCTCTTTTTACGAGTTCAAGAGCAAACTCAATCATTTCCACGACGCAGGATCAAACCGATACAAGTATTTGAATTTGATAGTAGCACACCACAACTCTCTTAAAGAGTAGATTTATAATTTGGAGCACTCACAACACAATAAAAAATCTCTCTCAAGAATAAGATAAATAAAAATAAAATTGAAAGCTCGTAGAGAACAACAATGGAGCTTTAGAAAATTGAAGATGAAGAGTCATGTAAGTTGTGTGTAGAAAATATAAGAAAGTAGATGGATTTAAATAGAGAAGAAAGTGGCAAAAGGTAGGAATTAATATTGACCATTGAAAGAGAAATGGAAGGTGGAGATTAAAAATAAATAATAAAAAAGTTTCTAAATTTATTATTATTATTTTTTAAATATAATAATAATAATATAAAAATAATAAAAACCTTTGGAGTAATAATAATATAATTAATAATAAAGAGTAATGTGAGTAACGGTTCAGTTAAAATTTTAAAATTTATTATAAATATAATAATATAATAATAATAAAAATGACATAAGTAACTACCAAAATTTTAAAATATAATAATGTAATAATGTAATATATTAATAATAACGTGAGTAACGGTTATATTCAAATTTATATTATGTATAAATAATTTTATTTAGGAATATAATAATAAGAAAAACTTCCCACTTTGTTACTCTTCCAAAATTATAAATGTCATACTTTGATTTGTCCATCATTTTGATTTAGCTGCACATCGGGTATGTTGTCTCGACTGTAATTTCTTCGTTTTAGCTCTGATTTAAGTGATTGAAAAGTCATTGAAATCGTTATTCCCGACCTTATACTGTGTACAGTTCAAAATACTGAAAATTGTTAATAATTAGAAGTATGTTTGTTATCATCAAAACATCAATCAATTAATTGATTAAAATTAATTAAAATGAGATTAATGGTCAAAAAGCCAACGATCTTCAACTTACATGACTTCATTGACTCAGCTCGACAGCTGCTCGACTCAAAAAACACATTATTTGGCTCGGGTTCCTTACATCTTTTTACCCTTTCGGAGCTGACTTTGACCTAATTAAGCCAATTGAGGTCAGTATAACATCATATTTCCAAGTTCAAGTTGATTTGGGCTAAAAATGTGAATGGTAACAAAACGAGATGGATGTTCTAATAAGAAACGACAACCGACGATACTTGGAACAACTTCGAAGGACAGAATTCAAATGTACTCGAGTTTAGGAAGAACGTCGGCTAAGGCCAACTAAGTAAGTGGTCTTACTATCGACATGGTTAGAAATTGATGTTTATATGATGATACGTGTCCCGTAGTTTTGCACGTGTCATATGCCTGATATGTGTAAAATGGTTATGAAATTATGTGATTATGACATGTTTAAGGAATTATATGACTATCATATGTTTATAAAATGATATGACTATGATGTGTTTATGAAATGATATGACTATGATATGTTTATCAAATTATATGACTATGATATGTTTATGAAATGACATGACTATGATATATTTGTGACATGATATAACTATGATATGTTATGGTAATATTATGACACTTGTTATGATGTGATGTGCTAATGATACGATATATATGATGGTGTAACACGTTTGGCAATATAATACATGTTATGACATGTTTTATGATATGATACGTGCATAATATAATACGATATGTCAAAGGATATGTTATGTGCATGATATGAAATAAGACGATGTATGATATGAATGATATGATATTCAACTCCAATACATGTCTTAAAGGCTATGTTGTAAAATGATATGATACGAAGAAAAATGGAAGGAGTTGTTTTATATGATTTAATGAATGAAAATGTTTGGATCTCGTGCATCATTGTGTGTTACATGTGCAAGAAATATTCCCTTTTACAATGGTACAGACGCGTAAGTTATGAGGCACAAAAATGATCATTATGTTTATCATAATGTTATGATAGTCACTATTCCTACCGGGTGTCTGACAATATCTACTAGATAATGTTAGCCCGACAAGAAACGGGGCTCAGAAGGTCTGCGAACCAATTGGTAGGTCCATTCTCGCATATGTGGGCCGTGCGTAGAATAGTAAATACACATTCAATTAACCATTTAGGATAGTCACATAAGGGAATACGGATTGAAAGGATAGGTCACATTCATGATTGTATGTTTTTGCATTTAACCTCAATAGTGGGATCACTTTTTTAGTATTTCTTAAAATACTCAAGGTACATTCTACTTCTATTTCAGGTAAAGACAAGGCACTTCTATATGGTTGACGACGACATTGCAAGTCGAGACCATGACATATGCATAGGATAGTTATATTGAACTTATTAGACTTTAGGTTAGAATAGGATGTTTTTACTTTTAATGTTTATTTATTTTATTTAGTATTTCGTTATGTTGTTTTAAAGATGTTTTCGAACACCTAATTATTTTATTTAGTATTTTAAAGATATTTTCGAACATGTAATTATATGATGATATGATATCATAGCATAACATATATATTCTCATTTATACAAGTAATTATGTAAGAAGTAGTACTATTGAAAGAATTAGGTAGTTATTTCTAATATGGTGAAGTACCTCCACGTAGGTTGATACGAATTTCGAGGGATAAGTCAAGCAAATCTTGAAAATAAGATAGAACGTCAGCTAAGGTCAACCAAGTAAGTGACCATACTATCAAGTCGGTCGAAAGAATTGTCTTAGGTATAATGACATGTGTCTAGTGGCTCCTGCTCGTGTCATGTGTTTGTTATGATGTGTTATGATAATATGTTATGCTATGATGATATTATGATGTTGTGATATGTTATGATGACATGAGATATATGACGATATGATATATTATGATGATATGTATGTATGAGATGTCATATTGCACTATGACATGAACATGGTTGGCAATGAAATGTATGACATGCTCCAACAAGTATGACAATGAAGATTTGTCTGATACAACCCCTAAGTAATGTCATGAATGAATGGTTAAGATGAAAAGTATAAAGACCTCATGCATACCGTATGTTCACATGAATTGAGATACTTCCCATTTTATGATGTGTATAGACACATACACTATAATGATGAGATGACCATCATGCTTTACAGGATGCACAATGGTTGTTGCACATTTGGGTATCCAGCTACGGTCAACTAGCCCGACCAGTAGATCCAGGGGATGTGCAATCCCACATGGTGGGCCCATGCTCACACGTGTGAATCGTGTGTAGGAAAGTATTACAAATTCAATTTGCTCCGACTAGAGGCCACCTAAGAGATTAGGATTTTAAATCATAGGTCACTATTCAATGATTGCATGTGTTTGCATTGCATGACTCCAATAATAGAGTCACTTATTGAGTATTTGTTAAAATACTCAAGTCATATGCTGTTTTTATATTTCAAATAACGGCAGGAACCCATGTATGATTGACGGCGACATCGCATCAAAGACCATGAAACTTGCATAGGGTAGTTGCTCTTTTATAATTTAACCTAAACAATATGACTAACATGCCCGATGATAACGTTAAACCGTTCGCACCCATTAAAAGCATATTAAAATTACCCATTCAATCTTCAAAATTATTAAACATATATCTATAGGGTAAGTTTTTTGTAAGAGAGAGAATGGCAAAAGTGTAAATATGGAAATAGCTTTATGGGATGTAACCCATAAAAGTTATGATCCATAATTACAAATTCATGTATGTTCTGGTTGGTTGAATCAAGACATAGGACAAAAAGAAGGCTACCTAGTGTTACATGGACTTCACTATGATAACCCTTTACCGCCTCAGCCGGTTTCCCCTTCCCCTCCTCTTCCCTTTATCACCAATCCATCTCTGCAGTCCTTAGCCCACCATTCCCTCTCTCTCTCTCTCTAACTCTCTCGCTCTCTCTGTTGACCGTAAAATCAAACGCTGCCCGTAATTCTTCGGTCACCGGCGGCGAAGAAAAGAAAAACCAATTATTTTATCTTGAGGGTGTTTTATTAGAGAGAAATTTGACGCCTTTACTACGATATGCACGAGGAGAATATTCAACTGGGTCACTTCAGAATTCAGCTTACGGTGGTGGTCGGCGGCGGAGGCGGCGGAGTTTGATGGTGAGGGCATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTGGCAGCGTCTCTTTTGATATTGCCTCTTGTGCTGCCACCGTTGCCGCCGCCGCCGGTGCTGCTGCTGTTTGTTCCGGTGCTGATTATGTTCTTTCTTCTGTTCTTGGCGCTGTCGCCGTCAGAGGTACCGGCGGAAGAGCACCGTGTCGGCGCCGACGGCGGCGGCGGTCACGATTCTGCTTGA

mRNA sequence

ATGCAAACGGCTGCCCATGTGATCAACAAGCTTCCCCAGCCAAGGCTAGGGTTTGTCTCACCATTTGAGATACTATGGGACATGAAACCTACAGTTAGCTACTTCCGAGTATTTGATTGTGTTTGCTATGTATTTGTGCCTGACCATCTACGTAGCAAGTTTGACAAGAAAGCAGTCAAGTGCATATTTGTCGGATATGATAATCAAAGAAAAGGGTGGAAGTGTTGTGATCCTACAAGTGAAAAATGCTATACATCAAGAGATGTAGTTTTCGATGAAGCATCTACATGGTGGTCCTCGGAGAAGAAGTTGGACGTGAAGAATGCTTTCTTGCACGGAGAGTTAAACAGGGAGATCTACATGAACCAACCAAAAGGATTTGAGAGTGCAACTAATCCTAATCACGTATGCAAGCTTAGAATAGCTCTTTATGGGTTGAAGCAAGCACCAAGAGCTTGGTATGGAGACCACGATACTCGAAGATCAACCACTGGGTATGTGTTCAAGTTGGGTTCGGGAACAATTTCTTGGTGTAGCAAAAGACAACCAACAGTATCGTTGTCAACTATAAAAGCAGAGTATAGAGCAGCAGCTGAGCAGCTCAGGAAAGTACGTGTCCTTAGCCCACCATTCCCTCTCTCTCTCTCTCTAACTCTCTCGCTCTCTCTGTTGACCGTAAAATCAAACGCTGCCCGTAATTCTTCGGTCACCGGCGGCGAAGAAAAGAAAAACCAATTATTTTATCTTGAGGGTGTTTTATTAGAGAGAAATTTGACGCCTTTACTACGATATGCACGAGGAGAATATTCAACTGGGTCACTTCAGAATTCAGCTTACGGTGGTGGTCGGCGGCGGAGGCGGCGGAGTTTGATGGTGAGGGCATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTGGCAGCGTCTCTTTTGATATTGCCTCTTGTGCTGCCACCGTTGCCGCCGCCGCCGGTGCTGCTGCTGTTTGTTCCGGTGCTGATTATGTTCTTTCTTCTGTTCTTGGCGCTGTCGCCGTCAGAGGTACCGGCGGAAGAGCACCGTGTCGGCGCCGACGGCGGCGGCGGTCACGATTCTGCTTGA

Coding sequence (CDS)

ATGCAAACGGCTGCCCATGTGATCAACAAGCTTCCCCAGCCAAGGCTAGGGTTTGTCTCACCATTTGAGATACTATGGGACATGAAACCTACAGTTAGCTACTTCCGAGTATTTGATTGTGTTTGCTATGTATTTGTGCCTGACCATCTACGTAGCAAGTTTGACAAGAAAGCAGTCAAGTGCATATTTGTCGGATATGATAATCAAAGAAAAGGGTGGAAGTGTTGTGATCCTACAAGTGAAAAATGCTATACATCAAGAGATGTAGTTTTCGATGAAGCATCTACATGGTGGTCCTCGGAGAAGAAGTTGGACGTGAAGAATGCTTTCTTGCACGGAGAGTTAAACAGGGAGATCTACATGAACCAACCAAAAGGATTTGAGAGTGCAACTAATCCTAATCACGTATGCAAGCTTAGAATAGCTCTTTATGGGTTGAAGCAAGCACCAAGAGCTTGGTATGGAGACCACGATACTCGAAGATCAACCACTGGGTATGTGTTCAAGTTGGGTTCGGGAACAATTTCTTGGTGTAGCAAAAGACAACCAACAGTATCGTTGTCAACTATAAAAGCAGAGTATAGAGCAGCAGCTGAGCAGCTCAGGAAAGTACGTGTCCTTAGCCCACCATTCCCTCTCTCTCTCTCTCTAACTCTCTCGCTCTCTCTGTTGACCGTAAAATCAAACGCTGCCCGTAATTCTTCGGTCACCGGCGGCGAAGAAAAGAAAAACCAATTATTTTATCTTGAGGGTGTTTTATTAGAGAGAAATTTGACGCCTTTACTACGATATGCACGAGGAGAATATTCAACTGGGTCACTTCAGAATTCAGCTTACGGTGGTGGTCGGCGGCGGAGGCGGCGGAGTTTGATGGTGAGGGCATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTGGCAGCGTCTCTTTTGATATTGCCTCTTGTGCTGCCACCGTTGCCGCCGCCGCCGGTGCTGCTGCTGTTTGTTCCGGTGCTGATTATGTTCTTTCTTCTGTTCTTGGCGCTGTCGCCGTCAGAGGTACCGGCGGAAGAGCACCGTGTCGGCGCCGACGGCGGCGGCGGTCACGATTCTGCTTGA

Protein sequence

MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVKCIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEKKLDVKNAFLHGELNREIYMNQPKGFESATNPNHVCKLRIALYGLKQAPRAWYGDHDTRRSTTGYVFKLGSGTISWCSKRQPTVSLSTIKAEYRAAAEQLRKVRVLSPPFPLSLSLTLSLSLLTVKSNAARNSSVTGGEEKKNQLFYLEGVLLERNLTPLLRYARGEYSTGSLQNSAYGGGRRRRRRSLMVRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEHRVGADGGGGHDSA
Homology
[Close]
BLAST of CmoCh03G001620 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-16
Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 0 

Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           +QTA ++IN+ P   L F  P  +  + + + S+ +VF C  +  VP   R+K D K++ 
Sbjct: 614 VQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIP 673

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEKKLDVKNAFLHGELNREIY 120
           CIF+GY ++  G++  DP  +K   SRDVVF E+    +++    VKN  +   +     
Sbjct: 674 CIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFVTIPST 733

Query: 121 MNQPKGFESATN 133
            N P   ES T+
Sbjct: 734 SNNPTSAESTTD 745


HSP 2 Score: 81.6 bits (200), Expect = 2.0e-14
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 102 KKLDVKNAFLHGELNREIYMNQPKGFESATNPNHVCKLRIALYGLKQAPRAWYGDHDTRR 161
           ++LDVK AFLHG+L  EIYM QP+GFE A   + VCKL  +LYGLKQAPR WY   D+  
Sbjct: 919 EQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFM 978

Query: 162 STTGYV 168
            +  Y+
Sbjct: 979 KSQTYL 984

[Close]
BLAST of CmoCh03G001620 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.7e-16
Identity = 54/145 (37.24%), Postives = 73/145 (50.34%), Query Frame = 0 

Query: 26   WDM-KPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVKCIFVGYDNQRKGWKCCDPTSE--K 85
            WD+  P  S+  +  C        +     ++   + +  GY NQR G    +  S   K
Sbjct: 985  WDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGY-NQRPGLDYAETFSPVIK 1044

Query: 86   CYTSRDVVFDEASTWWSSEKKLDVKNAFLHGELNREIYMNQPKGFESATNPNHVCKLRIA 145
              + R V+       W   ++LDV NAFL G L  ++YM+QP GF     PN+VCKLR A
Sbjct: 1045 STSIRIVLGVAVDRSWPI-RQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKA 1104

Query: 146  LYGLKQAPRAWYGDHDTRRSTTGYV 168
            LYGLKQAPRAWY +      T G+V
Sbjct: 1105 LYGLKQAPRAWYVELRNYLLTIGFV 1127

[Close]
BLAST of CmoCh03G001620 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.2e-15
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 102  KKLDVKNAFLHGELNREIYMNQPKGFESATNPNHVCKLRIALYGLKQAPRAWYGDHDTRR 161
            ++LDV NAFL G L  E+YM+QP GF     P++VC+LR A+YGLKQAPRAWY +  T  
Sbjct: 1045 RQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYL 1104

Query: 162  STTGYV 168
             T G+V
Sbjct: 1105 LTVGFV 1110

[Close]
BLAST of CmoCh03G001620 vs. ExPASy Swiss-Prot
Match: Q7X6L2 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica OX=39947 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-07
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 0 

Query: 295 FFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEEH 354
           +FS+ S+ +L+ V ASL+ILPLVLPPLPPPP +L+ VPV ++  LL LA  P+   +   
Sbjct: 99  YFSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPT-TTSSSS 158

Query: 355 RVGADGGGGHDSA 368
             G  GGGG + A
Sbjct: 159 SAGGGGGGGRNGA 170

[Close]
BLAST of CmoCh03G001620 vs. ExPASy Swiss-Prot
Match: Q8RXL7 (ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-07
Identity = 47/116 (40.52%), Postives = 62/116 (53.45%), Query Frame = 0 

Query: 233 NSSVTGGEEKKNQLFYLEGVLLERNLTPLLRYARGE-YSTGSLQNSAYGGGRRRRRRSLM 292
           N  V G   +KN  F        R   P     + E + T S QNS          R L+
Sbjct: 24  NMDVRGDHNRKNTSF--------RGSAPAPIMGKQELFRTLSSQNSP---------RRLI 83

Query: 293 VRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPS 348
             ++FSL S+ +L+ + ASLLILPL+LPPLPPPP +LL +P+ IM  L+ LA  PS
Sbjct: 84  SASYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]
BLAST of CmoCh03G001620 vs. ExPASy TrEMBL
Match: A0A6A3C1S2 (PLAC8 family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00013285pilonHSYRG00298 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 5.9e-62
Identity = 170/503 (33.80%), Postives = 186/503 (36.98%), Query Frame = 0 

Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           M+TAA VIN+LPQPRLGFVSPFE LW++KPTVSYFRVF CVCYVFVPDHLRSKFDKKAV+
Sbjct: 402 MRTAAFVINRLPQPRLGFVSPFEKLWNIKPTVSYFRVFGCVCYVFVPDHLRSKFDKKAVR 461

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEK------------------ 120
           CIFVGYD+QRKGWKCCDP S +CYTSR+VVFDEAS+WWSSEK                  
Sbjct: 462 CIFVGYDSQRKGWKCCDPISGRCYTSRNVVFDEASSWWSSEKEVLPDSREFGDKLQRKMG 521

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 522 EHDVQLQTSSDESEDPNGDDVEQRVTQNPWQTGVYQQPNEEGGPSETEESIPQSQLRRST 581

Query: 181 ------------------------------------------------------------ 199
                                                                       
Sbjct: 582 RIRRPNPKYANAAIIEEATEPETFEEASKSSEWMTAMKEEIDALQQNQTWDIVPKIKDVK 641

[Close]
BLAST of CmoCh03G001620 vs. ExPASy TrEMBL
Match: A0A6A2X170 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117021pilonHSYRG00028 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.5e-60
Identity = 170/520 (32.69%), Postives = 186/520 (35.77%), Query Frame = 0 

Query: 1    MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
            M+TAA VIN+LPQPRLGFVSPFE LW++KPTVSYFRVF CVCYVFVPDHLRSKFDKKAV+
Sbjct: 626  MRTAAFVINRLPQPRLGFVSPFEKLWNIKPTVSYFRVFGCVCYVFVPDHLRSKFDKKAVR 685

Query: 61   CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEK------------------ 120
            CIFVGYD+QRKGWKCCDP S +CYTSR+VVFDEAS+WWSSEK                  
Sbjct: 686  CIFVGYDSQRKGWKCCDPISGRCYTSRNVVFDEASSWWSSEKEVLPDSREFGDKLQRKMG 745

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 746  EHDVQLQTSSDESEDPNGDDVEQRVTQNPWQTGVPNPKYANAAIIEEATEPETFEEASKS 805

Query: 181  ------------------------------------------------------------ 199
                                                                        
Sbjct: 806  SEWMTAMKEEIDALQQNQTWDIVPKIKDVKPISCKWVYKIKRRPDGSIERYKARLVARGF 865

[Close]
BLAST of CmoCh03G001620 vs. ExPASy TrEMBL
Match: A0A2N9HDK6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23021 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.3e-58
Identity = 170/530 (32.08%), Postives = 186/530 (35.09%), Query Frame = 0 

Query: 1    MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
            M+TAA VIN+LPQPRL FVSPFE LW+MKPTVSYFRVF CVCYVFVP+HLRSKFDKKAV+
Sbjct: 653  MRTAAFVINRLPQPRLEFVSPFEKLWNMKPTVSYFRVFGCVCYVFVPNHLRSKFDKKAVR 712

Query: 61   CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEK------------------ 120
            CIFVGYD+QRKGWKCCDPTS +CYTSRDVVFDEAS+WWSSEK                  
Sbjct: 713  CIFVGYDSQRKGWKCCDPTSGRCYTSRDVVFDEASSWWSSEKEVLSDSREFGDKLQQKMG 772

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 773  EHTVQLQPSSDESGDPNGDDVEQRVAQNPWQTGVYQQPNEEGGPTETEELTPQSQLRRST 832

Query: 181  ------------------------------------------------------------ 199
                                                                        
Sbjct: 833  RTRRPNPKYANAAIVEEATIIEPETFEEASQSSEWMKAMEEEIHALKQNQTWDLMPKPRD 892

[Close]
BLAST of CmoCh03G001620 vs. ExPASy TrEMBL
Match: A0A2N9GCM1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25011 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.3e-58
Identity = 170/530 (32.08%), Postives = 186/530 (35.09%), Query Frame = 0 

Query: 1    MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
            M+TAA VIN+LPQPRL FVSPFE LW+MKPTVSYFRVF CVCYVFVP+HLRSKFDKKAV+
Sbjct: 630  MRTAAFVINRLPQPRLEFVSPFEKLWNMKPTVSYFRVFGCVCYVFVPNHLRSKFDKKAVR 689

Query: 61   CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEK------------------ 120
            CIFVGYD+QRKGWKCCDPTS +CYTSRDVVFDEAS+WWSSEK                  
Sbjct: 690  CIFVGYDSQRKGWKCCDPTSGRCYTSRDVVFDEASSWWSSEKEVLSDSREFGDKLQQKMG 749

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 750  EHTVQLQPSSDESGDPNGDDVEQRVAQNPWQTGVYQQPNEEGGPTETEELTPQSQLRRST 809

Query: 181  ------------------------------------------------------------ 199
                                                                        
Sbjct: 810  RTRRPNPKYANAAIVEEATIIEPETFEEASQSSEWMKAMEEEIHALKQNQTWDLMPKPRD 869

[Close]
BLAST of CmoCh03G001620 vs. ExPASy TrEMBL
Match: A0A2N9EYD8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7747 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.3e-58
Identity = 170/530 (32.08%), Postives = 186/530 (35.09%), Query Frame = 0 

Query: 1    MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
            M+TAA VIN+LPQPRL FVSPFE LW+MKPTVSYFRVF CVCYVFVP+HLRSKFDKKAV+
Sbjct: 2100 MRTAAFVINRLPQPRLEFVSPFEKLWNMKPTVSYFRVFGCVCYVFVPNHLRSKFDKKAVR 2159

Query: 61   CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEK------------------ 120
            CIFVGYD+QRKGWKCCDPTS +CYTSRDVVFDEAS+WWSSEK                  
Sbjct: 2160 CIFVGYDSQRKGWKCCDPTSGRCYTSRDVVFDEASSWWSSEKEVLSDSREFGDKLQQKMG 2219

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 2220 EHTVQLQPSSDESGDPNGDDVEQRVAQNPWQTGVYQQPNEEGGPTETEELTPQSQLRRST 2279

Query: 181  ------------------------------------------------------------ 199
                                                                        
Sbjct: 2280 RTRRPNPKYANAAIVEEATIIEPETFEEASQSSEWMKAMEEEIHALKQNQTWDLMPKPRD 2339

[Close]
BLAST of CmoCh03G001620 vs. NCBI nr
Match: KAE8723075.1 (PLAC8 family protein [Hibiscus syriacus])

HSP 1 Score: 248.1 bits (632), Expect = 1.2e-61
Identity = 170/503 (33.80%), Postives = 186/503 (36.98%), Query Frame = 0 

Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           M+TAA VIN+LPQPRLGFVSPFE LW++KPTVSYFRVF CVCYVFVPDHLRSKFDKKAV+
Sbjct: 402 MRTAAFVINRLPQPRLGFVSPFEKLWNIKPTVSYFRVFGCVCYVFVPDHLRSKFDKKAVR 461

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEK------------------ 120
           CIFVGYD+QRKGWKCCDP S +CYTSR+VVFDEAS+WWSSEK                  
Sbjct: 462 CIFVGYDSQRKGWKCCDPISGRCYTSRNVVFDEASSWWSSEKEVLPDSREFGDKLQRKMG 521

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 522 EHDVQLQTSSDESEDPNGDDVEQRVTQNPWQTGVYQQPNEEGGPSETEESIPQSQLRRST 581

Query: 181 ------------------------------------------------------------ 199
                                                                       
Sbjct: 582 RIRRPNPKYANAAIIEEATEPETFEEASKSSEWMTAMKEEIDALQQNQTWDIVPKIKDVK 641

[Close]
BLAST of CmoCh03G001620 vs. NCBI nr
Match: KAE8655616.1 (hypothetical protein F3Y22_tig00117021pilonHSYRG00028 [Hibiscus syriacus])

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-59
Identity = 170/520 (32.69%), Postives = 186/520 (35.77%), Query Frame = 0 

Query: 1    MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
            M+TAA VIN+LPQPRLGFVSPFE LW++KPTVSYFRVF CVCYVFVPDHLRSKFDKKAV+
Sbjct: 626  MRTAAFVINRLPQPRLGFVSPFEKLWNIKPTVSYFRVFGCVCYVFVPDHLRSKFDKKAVR 685

Query: 61   CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEK------------------ 120
            CIFVGYD+QRKGWKCCDP S +CYTSR+VVFDEAS+WWSSEK                  
Sbjct: 686  CIFVGYDSQRKGWKCCDPISGRCYTSRNVVFDEASSWWSSEKEVLPDSREFGDKLQRKMG 745

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 746  EHDVQLQTSSDESEDPNGDDVEQRVTQNPWQTGVPNPKYANAAIIEEATEPETFEEASKS 805

Query: 181  ------------------------------------------------------------ 199
                                                                        
Sbjct: 806  SEWMTAMKEEIDALQQNQTWDIVPKIKDVKPISCKWVYKIKRRPDGSIERYKARLVARGF 865

[Close]
BLAST of CmoCh03G001620 vs. NCBI nr
Match: KAE8676439.1 (hypothetical protein F3Y22_tig00111614pilonHSYRG00169 [Hibiscus syriacus])

HSP 1 Score: 233.0 bits (593), Expect = 4.0e-57
Identity = 167/527 (31.69%), Postives = 184/527 (34.91%), Query Frame = 0 

Query: 1    MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
            M+TAA VI++LPQPRLGFVSPFE LW++KPTVSYFRVF CVCYVFVPDHLRSKFDKKAV+
Sbjct: 653  MRTAAFVIDRLPQPRLGFVSPFEKLWNIKPTVSYFRVFGCVCYVFVPDHLRSKFDKKAVR 712

Query: 61   CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEK------------------ 120
            CIFVGYD+QRKGWKCCDP S +CYTSR+VVFDEAS+WWS EK                  
Sbjct: 713  CIFVGYDSQRKGWKCCDPISGRCYTSRNVVFDEASSWWSLEKENPWQTGVYQQPNEKGGP 772

Query: 121  ------------------------------------------------------------ 180
                                                                        
Sbjct: 773  SETEESIPQSQLRRSTRIRRPNPKYANAAIIEEATEPETFEEASKSSEWMTAMKEEIDAL 832

Query: 181  ------------------------------------------------------------ 199
                                                                        
Sbjct: 833  QQNQTWDIVPKIKDVKPISCKWVYKIKRRPDGSIERYKARLVARGFSQQYGLDYDETFSP 892

[Close]
BLAST of CmoCh03G001620 vs. NCBI nr
Match: KAE8665560.1 (PLAC8 family protein [Hibiscus syriacus])

HSP 1 Score: 232.3 bits (591), Expect = 6.9e-57
Identity = 162/508 (31.89%), Postives = 181/508 (35.63%), Query Frame = 0 

Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           M+T A VINKLPQPRLGFVSPFE LW++KPTVSYFRVF CVCYVFVPDHL+SKFDKKAV+
Sbjct: 417 MRTVAFVINKLPQPRLGFVSPFEKLWNIKPTVSYFRVFGCVCYVFVPDHLQSKFDKKAVR 476

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEK------------------ 120
           CIFVGYD+QRKGWKCCDP SE+ YTSR+VVFDEAS+WWSSEK                  
Sbjct: 477 CIFVGYDSQRKGWKCCDPISERYYTSRNVVFDEASSWWSSEKEVLPDSREFGDKLQQKMG 536

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 537 EHDVQLQTSSDESEDPNVDDVEQRVTQNPWQTGMYQQPNEEAIVEEATEPETFEEASKSS 596

Query: 181 ------------------------------------------------------------ 198
                                                                       
Sbjct: 597 EWMTAMKEEIDALQQNQTWDIVPKIKDVKLISCKWVYKIKRRPDGSIERYKARLVARGFS 656

[Close]
BLAST of CmoCh03G001620 vs. NCBI nr
Match: KAE8691386.1 (hypothetical protein F3Y22_tig00110890pilonHSYRG01193 [Hibiscus syriacus])

HSP 1 Score: 227.6 bits (579), Expect = 1.7e-55
Identity = 129/308 (41.88%), Postives = 144/308 (46.75%), Query Frame = 0 

Query: 1   MQTAAHVINKLPQPRLGFVSPFEILWDMKPTVSYFRVFDCVCYVFVPDHLRSKFDKKAVK 60
           M TAA VINKLPQPRLGFVSPFE LW++KPTVSYFRVF CVCYVFVPDHLRSKFDKK V+
Sbjct: 625 MMTAAFVINKLPQPRLGFVSPFEKLWNIKPTVSYFRVFGCVCYVFVPDHLRSKFDKKVVR 684

Query: 61  CIFVGYDNQRKGWKCCDPTSEKCYTSRDVVFDEASTWWSSEK------------------ 120
           CIFVGYD+QRKGWKCCDP S +CYTSR+VVFDEAS+WWSSEK                  
Sbjct: 685 CIFVGYDSQRKGWKCCDPISGRCYTSRNVVFDEASSWWSSEKGVLPDSREFGDKLQQKMG 744

Query: 121 ------------------------------------------------------------ 167
                                                                       
Sbjct: 745 EHVVQLQISSDESEDPNGDDVEQRVTQNSWQTGVYERRDRCTSAKSNLGYCTKDKRCETI 804

[Close]
BLAST of CmoCh03G001620 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 63.2 bits (152), Expect = 5.2e-10
Identity = 35/105 (33.33%), Postives = 60/105 (57.14%), Query Frame = 0 

Query: 55  DKKAVKCIFVGYDNQRKGWKCCDPTSEKC-YTSRDVVFDEASTWWSSEKKLDVKNAFLHG 114
           ++   + +  GY  Q++G    +  S  C  TS  ++   ++ +  +  +LD+ NAFL+G
Sbjct: 144 ERYKARLVAKGY-TQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNG 203

Query: 115 ELNREIYMNQPKGFES----ATNPNHVCKLRIALYGLKQAPRAWY 155
           +L+ EIYM  P G+ +    +  PN VC L+ ++YGLKQA R W+
Sbjct: 204 DLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWF 247


HSP 2 Score: 47.8 bits (112), Expect = 2.2e-05
Identity = 33/74 (44.59%), Postives = 41/74 (55.41%), Query Frame = 0 

Query: 158 DTRRSTTGYVFKLGSGTISWCSKRQPTVSLSTIKAEYRAAAEQLRKVRVLSPPFPLSLSL 217
           DTRRST GY   LG+  ISW SK+Q  VS S+ +AEYRA +    ++  L+  F   L L
Sbjct: 455 DTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLA-QFFRELQL 514

Query: 218 TLSLSLLTVKSNAA 232
            LS   L    N A
Sbjct: 515 PLSKPTLLFCDNTA 527

[Close]
BLAST of CmoCh03G001620 vs. TAIR 10
Match: AT2G44080.1 (ARGOS-like )

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-08
Identity = 47/116 (40.52%), Postives = 62/116 (53.45%), Query Frame = 0 

Query: 233 NSSVTGGEEKKNQLFYLEGVLLERNLTPLLRYARGE-YSTGSLQNSAYGGGRRRRRRSLM 292
           N  V G   +KN  F        R   P     + E + T S QNS          R L+
Sbjct: 24  NMDVRGDHNRKNTSF--------RGSAPAPIMGKQELFRTLSSQNSP---------RRLI 83

Query: 293 VRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPS 348
             ++FSL S+ +L+ + ASLLILPL+LPPLPPPP +LL +P+ IM  L+ LA  PS
Sbjct: 84  SASYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]
BLAST of CmoCh03G001620 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-07
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 286 RRRSLMVRAFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALS 345
           ++R ++   +FSL S+ +L+ + ASLLILPLVLPPLPPPP +LL VP+ IM  L+ LA  
Sbjct: 55  QKRMMIPANYFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFM 114

Query: 346 PS 348
           PS
Sbjct: 115 PS 116

[Close]
BLAST of CmoCh03G001620 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-07
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 0 

Query: 153 WYGDHDTRRSTTGYVFKLGSGTISWCSKRQPTVSLSTIKAEYRAAA 199
           W G   TRRSTTG+   LG   ISW +KRQPTVS S+ + EYRA A
Sbjct: 172 WAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALA 217

[Close]
BLAST of CmoCh03G001620 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 5.3e-07
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 0 

Query: 294 AFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPA 352
           +  + RSVA+L+ ++  LLILP  LPPLPPPP  LL +P+L+M  L+FLA SPS  P+
Sbjct: 23  SLITARSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

The following BLAST results are available for this feature:
BLAST of CmoCh03G001620 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109781.6e-1632.58Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q94HW24.7e-1637.24Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT945.2e-1556.06Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q7X6L22.3e-0749.32Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon... [more]
Q8RXL73.1e-0740.52ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1[more]
BLAST of CmoCh03G001620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A3C1S25.9e-6233.80PLAC8 family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00013285pilonHSY... [more]
A0A6A2X1705.5e-6032.69Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117021pilon... [more]
A0A2N9HDK62.3e-5832.08Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23021 PE=4 SV=1[more]
A0A2N9GCM12.3e-5832.08Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25011 PE=4 SV=1[more]
A0A2N9EYD82.3e-5832.08Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7747 PE=4 SV=1[more]
BLAST of CmoCh03G001620 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8723075.11.2e-6133.80PLAC8 family protein [Hibiscus syriacus][more]
KAE8655616.11.1e-5932.69hypothetical protein F3Y22_tig00117021pilonHSYRG00028 [Hibiscus syriacus][more]
KAE8676439.14.0e-5731.69hypothetical protein F3Y22_tig00111614pilonHSYRG00169 [Hibiscus syriacus][more]
KAE8665560.16.9e-5731.89PLAC8 family protein [Hibiscus syriacus][more]
KAE8691386.11.7e-5541.88hypothetical protein F3Y22_tig00110890pilonHSYRG01193 [Hibiscus syriacus][more]

Pages

BLAST of CmoCh03G001620 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G23160.15.2e-1033.33cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
AT2G44080.12.2e-0840.52ARGOS-like [more]
AT3G59900.11.4e-0754.84auxin-regulated gene involved in organ size [more]
ATMG00810.11.4e-0758.70DNA/RNA polymerases superfamily protein [more]
AT2G41230.15.3e-0753.45unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 103..155
e-value: 1.2E-16
score: 61.0
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 103..155
NoneNo IPR availablePANTHERPTHR11439:SF351CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8coord: 103..155
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 153..199
e-value: 1.22566E-24
score: 95.9981

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G001620.1CmoCh03G001620.1mRNA