CmoCh03G000660 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G000660
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein of unknown function (DUF1138)
Location	Cmo_Chr03: 1057604 .. 1059627 (-)
RNA-Seq Expression	CmoCh03G000660
Synteny	CmoCh03G000660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTGTCGATTGCTCCAACTTCAATCTTCAGAGCTTCTTTTCACAATTTTTGGATTCAAAATTCTTGACTCATTCTCATCTCCTCATCACATCTACGGCACGCCCTGCTGCCGATCTCTCCTCCTTCCCCGTCGATCTTCTTCCTGTTTCCCAATCTCTCTGTCTCCCTCTGAGGTTCATCGCTTGGAAAATCGAATCAATCTGACGGTTCGTTGATTCTGCAGCTCAATCGGTATGTCTGTGTCTCTGTCTTTCTCTCAATCTTGGCTTCTGTGCTCATTTTAAATGGAATTTCATGGTGGAGGCTGTTCAAACGTGTCTTAGTAATTCTAGCGTTTCGTAGAATTGTGAAAAATGGAGGCATATGTTCGTGCTATAATTGATCATTGTTATTAGGTCACTCCTATGTCTTTTTTTTACGTGTTTTAATTTGATTCCTTTGCGTTCTCTAGTTTTCTTCTTTTCGGTTTTGTTGCAATGCGATTTGCTTAATGTTCATGTGCATAATTTTTGAATATTTGATGATTTATTCATGGTTGCTTTGGCTGTAATTGTGAATTTTCTTGCTGAATTACTTTTGACAAAAACTTATCACGATCCAATCCAATTCTATGGGGTTTGGTTTGATAAATTGGGAGATTGTGTCCTGAAATGGCTTCAGATTGATTCTTCCCAAACTTATAGCCTTTCAAGGGTTCTATACGTCGAAGATGGTTGGGAGGGAGTTCCACATTGGCTAATTTAAAGGTTGATCATGGATTTATAAACAAGAAATACTATCTCCGCGAGGCCTTTTGGGAAAACCAAAAGCAAAGCCACGAGAGCTTTTGCTTAAAATGGACAATATCATACCATTGTAGAGATCCGTAATTCTTAACATTGTATCAGTGCCATGCCCATAATTTAGCCAGGTAAGTAGAATCCTCAAATCTCAGAACAAAGAAGTTGTGAGCCTCGAAGGTATAGTAAAAAAGTGACTCAAGTGTCGAACAAATGGTGTACTTGAGTCAAGCCTCAATTAAAAGGAGTCTCTTCGGAGGCTTTTCAAGTTTCAGAGGAGGCTCTATGGTGTACTTTTTTCGAGAGGATTATTGGGAGGAAGTCCCATATTGACTAATTTAGAGGTTAATCATTGTTTATATTATAAGTAAGGAATACTATCTCTAGACTAATTTAGAGGTTAATCATTGTTTATATTATAACTAAGGAATACTATCTCTATTGGTATGAGGTTTTTTGGGAAAACCAAAAGAGAGCTTATACTAAAAGTGGACAATATTATACCATTGTGGAGAGGTCTTTTGGGAAAACCAAAAGAGAGCTTATGCCCAAAGTGGACAATATTATACCATTATGGAGAGTCGTAATTCGTAATTCGTAATTCCTAATTCCTAACTCTACGAGTCGTAATTCCTAACACTACGCGCTAAAAGTTTTCTGGTTAAATCTATTTCTAACTTATAACCCTTGATGTAATTCTGCGTATGATATGGTTGATTTGATTTGGGAACATATTAGTCCATTGCAGTTAGAAGATGGCAGCAAAATACATAGTAGTTTCTACACTTGGAGCATTTGCATTTGCTTATATTTCTCATATTCTTGTTGCTGACAAGAAAATATTTGGAGGTAACAATCGTGGTCCTCATCATTTGGCTTTGCAGTTTCTTGCTCTATTCTCTTAATTTCTTGCTCTTTTCAATGGATTGCTTGCTCAGGAACAACCCCAACTACTGTTTTAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACCGCCGGCCCACCTGTGGTCATGAACCCCATCAGCCGCCAGAATTTCATTGTCAAAACCCGCTCTGAAGCTTAAAATGTTGCTTTGGTTGTCTATTTATACAATTTTGATTGGGTAATTCTGCTTTTGGAAGTACTTCTTAGTCGTTAAGCAGTTCTAACCTGCCTTCGTATTTGATGTGGGGAACTGAAGGAATTGTTGTTGAGCTGATAGCCTTTTTTTTTTATTTTTCC

mRNA sequence

ACTGTCGATTGCTCCAACTTCAATCTTCAGAGCTTCTTTTCACAATTTTTGGATTCAAAATTCTTGACTCATTCTCATCTCCTCATCACATCTACGGCACGCCCTGCTGCCGATCTCTCCTCCTTCCCCGTCGATCTTCTTCCTGTTTCCCAATCTCTCTGTCTCCCTCTGAGGTTCATCGCTTGGAAAATCGAATCAATCTGACGGTTCGTTGATTCTGCAGCTCAATCGTCCATTGCAGTTAGAAGATGGCAGCAAAATACATAGTAGTTTCTACACTTGGAGCATTTGCATTTGCTTATATTTCTCATATTCTTGTTGCTGACAAGAAAATATTTGGAGGAACAACCCCAACTACTGTTTTAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACCGCCGGCCCACCTGTGGTCATGAACCCCATCAGCCGCCAGAATTTCATTGTCAAAACCCGCTCTGAAGCTTAAAATGTTGCTTTGGTTGTCTATTTATACAATTTTGATTGGGTAATTCTGCTTTTGGAAGTACTTCTTAGTCGTTAAGCAGTTCTAACCTGCCTTCGTATTTGATGTGGGGAACTGAAGGAATTGTTGTTGAGCTGATAGCCTTTTTTTTTTATTTTTCC

Coding sequence (CDS)

ATGGCAGCAAAATACATAGTAGTTTCTACACTTGGAGCATTTGCATTTGCTTATATTTCTCATATTCTTGTTGCTGACAAGAAAATATTTGGAGGAACAACCCCAACTACTGTTTTAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACCGCCGGCCCACCTGTGGTCATGAACCCCATCAGCCGCCAGAATTTCATTGTCAAAACCCGCTCTGAAGCTTAA

Protein sequence

MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRSEA

Homology

[Close]

BLAST of CmoCh03G000660 vs. ExPASy TrEMBL
Match: A0A6J1EPT4 (uncharacterized protein LOC111435531 OS=Cucurbita moschata OX=3662 GN=LOC111435531 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.4e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP 60
          MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRSEA 81
          PVVMNPISRQNFIVKTRSEA
Sbjct: 61 PVVMNPISRQNFIVKTRSEA 80

[Close]

BLAST of CmoCh03G000660 vs. ExPASy TrEMBL
Match: A0A6J1HS56 (uncharacterized protein LOC111467297 OS=Cucurbita maxima OX=3661 GN=LOC111467297 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.7e-36
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP 60
          MAAKYIVVSTLGAFAFAY+S ILVADKKIFGGTTP+TVLNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVVSTLGAFAFAYVSDILVADKKIFGGTTPSTVLNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRSEA 81
          PVVMNPISRQNFIVKTRSEA
Sbjct: 61 PVVMNPISRQNFIVKTRSEA 80

[Close]

BLAST of CmoCh03G000660 vs. ExPASy TrEMBL
Match: A0A6J1HPI7 (uncharacterized protein LOC111466138 OS=Cucurbita maxima OX=3661 GN=LOC111466138 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.4e-31
Identity = 67/80 (83.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP 60
          MAAKY+  S +G FA AYI+  LV+DKKIFGGTTP+TV NSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRSEA 81
          PVVMNPISRQNFIVKTRSEA
Sbjct: 61 PVVMNPISRQNFIVKTRSEA 80

[Close]

BLAST of CmoCh03G000660 vs. ExPASy TrEMBL
Match: A0A6J1EBA8 (uncharacterized protein LOC111432556 OS=Cucurbita moschata OX=3662 GN=LOC111432556 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.9e-30
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1  MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+  S +G FA AYI+  LV+DKKIFGGTTP+TV NSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRSEA 81
          PVVMNPISRQNFIVKTR EA
Sbjct: 61 PVVMNPISRQNFIVKTRPEA 80

[Close]

BLAST of CmoCh03G000660 vs. ExPASy TrEMBL
Match: A0A7J9IR19 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_020741 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.2e-29
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1  MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP 60
          MAAKYI+ S  GAFA AY+S +LV+D KIFGGTTP+TV N  WWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIIASVAGAFAIAYVSDLLVSDSKIFGGTTPSTVSNKGWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRSEA 81
          PVVMNPISRQNFIVK+ SE+
Sbjct: 61 PVVMNPISRQNFIVKSGSES 80

[Close]

BLAST of CmoCh03G000660 vs. NCBI nr
Match: XP_022928693.1 (uncharacterized protein LOC111435531 [Cucurbita moschata] >XP_022928694.1 uncharacterized protein LOC111435531 [Cucurbita moschata] >XP_022928695.1 uncharacterized protein LOC111435531 [Cucurbita moschata] >XP_022928696.1 uncharacterized protein LOC111435531 [Cucurbita moschata] >KAG7033528.1 hypothetical protein SDJN02_03250 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP 60
          MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRSEA 81
          PVVMNPISRQNFIVKTRSEA
Sbjct: 61 PVVMNPISRQNFIVKTRSEA 80

[Close]

BLAST of CmoCh03G000660 vs. NCBI nr
Match: KAG6603220.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP 60
           MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP
Sbjct: 108 MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP 167

Query: 61  PVVMNPISRQNFIVKTRSEA 81
           PVVMNPISRQNFIVKTRSEA
Sbjct: 168 PVVMNPISRQNFIVKTRSEA 187

[Close]

BLAST of CmoCh03G000660 vs. NCBI nr
Match: XP_022967931.1 (uncharacterized protein LOC111467297 [Cucurbita maxima] >XP_022967932.1 uncharacterized protein LOC111467297 [Cucurbita maxima])

HSP 1 Score: 160.6 bits (405), Expect = 5.6e-36
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP 60
          MAAKYIVVSTLGAFAFAY+S ILVADKKIFGGTTP+TVLNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVVSTLGAFAFAYVSDILVADKKIFGGTTPSTVLNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRSEA 81
          PVVMNPISRQNFIVKTRSEA
Sbjct: 61 PVVMNPISRQNFIVKTRSEA 80

[Close]

BLAST of CmoCh03G000660 vs. NCBI nr
Match: XP_023544258.1 (uncharacterized protein LOC111803886 [Cucurbita pepo subsp. pepo] >XP_023544259.1 uncharacterized protein LOC111803886 [Cucurbita pepo subsp. pepo] >XP_023544260.1 uncharacterized protein LOC111803886 [Cucurbita pepo subsp. pepo] >XP_023544262.1 uncharacterized protein LOC111803886 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 8.0e-35
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1  MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP 60
          MAAKYIVVSTLGAFAFAYIS  LVADKKIFGGTTP+TVLNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVVSTLGAFAFAYISDNLVADKKIFGGTTPSTVLNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRSE 80
          PVVMNPISRQNFIVKTRSE
Sbjct: 61 PVVMNPISRQNFIVKTRSE 79

[Close]

BLAST of CmoCh03G000660 vs. NCBI nr
Match: XP_022966506.1 (uncharacterized protein LOC111466138 [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 7.0e-31
Identity = 67/80 (83.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MAAKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGP 60
          MAAKY+  S +G FA AYI+  LV+DKKIFGGTTP+TV NSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRSEA 81
          PVVMNPISRQNFIVKTRSEA
Sbjct: 61 PVVMNPISRQNFIVKTRSEA 80

[Close]

BLAST of CmoCh03G000660 vs. TAIR 10
Match: AT1G01170.1 (Protein of unknown function (DUF1138) )

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-27
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 3  AKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGPPV 62
          AKYI+ + +G+F  +YI   +++D KIFGGTTP TV N EWW  TD+KFQAWPRTAGPPV
Sbjct: 7  AKYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPV 66

Query: 63 VMNPISRQNFIVKTRSE 80
          VMNPISRQNFIVKTR E
Sbjct: 67 VMNPISRQNFIVKTRPE 83

[Close]

BLAST of CmoCh03G000660 vs. TAIR 10
Match: AT1G01170.2 (Protein of unknown function (DUF1138) )

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-27
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 3  AKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGPPV 62
          AKYI+ + +G+F  +YI   +++D KIFGGTTP TV N EWW  TD+KFQAWPRTAGPPV
Sbjct: 7  AKYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPV 66

Query: 63 VMNPISRQNFIVKTRSE 80
          VMNPISRQNFIVKTR E
Sbjct: 67 VMNPISRQNFIVKTRPE 83

[Close]

BLAST of CmoCh03G000660 vs. TAIR 10
Match: AT4G00860.1 (Protein of unknown function (DUF1138) )

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-21
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 3  AKYIVVSTLGAFAFAYISHILVADKKIFGGTTPTTVLNSEWWEETDKKFQAWPRTAGPPV 62
          A YI+ +  G+   AY+   +++D K+FGGTTP T+ N EW   T+++ QAWPR AGPPV
Sbjct: 4  ATYIIGALAGSAVVAYVCDKVISDDKLFGGTTPGTITNKEWGAATEERLQAWPRVAGPPV 63

Query: 63 VMNPISRQNFIVKTRSE 80
          VMNPISRQNFIVK+R E
Sbjct: 64 VMNPISRQNFIVKSRPE 80

The following BLAST results are available for this feature:

BLAST of CmoCh03G000660 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh03G000660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EPT4	6.4e-38	100.00	uncharacterized protein LOC111435531 OS=Cucurbita moschata OX=3662 GN=LOC1114355...	[more]
A0A6J1HS56	2.7e-36	96.25	uncharacterized protein LOC111467297 OS=Cucurbita maxima OX=3661 GN=LOC111467297...	[more]
A0A6J1HPI7	3.4e-31	83.75	uncharacterized protein LOC111466138 OS=Cucurbita maxima OX=3661 GN=LOC111466138...	[more]
A0A6J1EBA8	2.9e-30	81.25	uncharacterized protein LOC111432556 OS=Cucurbita moschata OX=3662 GN=LOC1114325...	[more]
A0A7J9IR19	4.2e-29	78.75	Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_020741 PE=4 S...	[more]

BLAST of CmoCh03G000660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928693.1	1.3e-37	100.00	uncharacterized protein LOC111435531 [Cucurbita moschata] >XP_022928694.1 unchar...	[more]
KAG6603220.1	1.3e-37	100.00	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022967931.1	5.6e-36	96.25	uncharacterized protein LOC111467297 [Cucurbita maxima] >XP_022967932.1 uncharac...	[more]
XP_023544258.1	8.0e-35	96.20	uncharacterized protein LOC111803886 [Cucurbita pepo subsp. pepo] >XP_023544259....	[more]
XP_022966506.1	7.0e-31	83.75	uncharacterized protein LOC111466138 [Cucurbita maxima]	[more]

BLAST of CmoCh03G000660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01170.1	1.0e-27	70.13	Protein of unknown function (DUF1138)	[more]
AT1G01170.2	1.0e-27	70.13	Protein of unknown function (DUF1138)	[more]
AT4G00860.1	1.4e-21	57.14	Protein of unknown function (DUF1138)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009515	Protein of unknown function DUF1138	PFAM	PF06592	DUF1138	coord: 3..75 e-value: 6.5E-41 score: 138.3
IPR009515	Protein of unknown function DUF1138	PANTHER	PTHR34267	OS11G0161033 PROTEIN	coord: 1..78
None	No IPR available	PANTHER	PTHR34267:SF1	OS11G0161033 PROTEIN	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G000660.1	CmoCh03G000660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane