CmoCh03G000610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh03G000610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	exosome complex component RRP43
Location	Cmo_Chr03: 1015171 .. 1026390 (+)
RNA-Seq Expression	CmoCh03G000610
Synteny	CmoCh03G000610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTCTTTTCGTTCTTCATTTTTTCTGAAACGTCCTACCTTTCTTGCGCTCATCCCTCCGATTACCAGCTACTGCACCCCAACCCGCACGCCGCTGTCTCAGCCGCCTGAAAAGCTCGCCGCTGCTACCCCCCGTGTCACGCTCTCTCGTCTCTTTGCGCAATCAGTGCTACTTATAGGCTTCAGCTCCTAACCGCCGCCACTGGTGAGATCTCTGTCAGCCCCTATGTCTAAGGATTTGAGTTTTTGTTTGTTTTTTTTGTCTATTTTGTTTCTTTGATTGATTCTGTTCGTCCACGAAGGATAAGTTCTAAAGAAGCATTTAATTTTGTTGATTTCTTCTTCAACAAATGTTCAATGTATCCGGAGGAAAACATAAAACCAAAATGCGTCAGGAGTTTGCTTGAATGGTTCTGAGTTTTGTCGAATACAGAAAAAAAAAAAAAAAAAATTATCTATGCTAATGAAATGGTGTAGCGAGGCTTAAATTTATTGCTCGAATATAGAAGAAGCGGTCTCCAATGGCGGTAGAATTCTATAAAAATCTTTCCAAATCCTCGACCGATTTGGAATGGAGTTTTTTTTTAAAGCTAGATTTCTAATCAAAACTGGTTTCCAATTTCTGAGAAACAGATAAGAGTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGGAAATGGAGGTTGATGCTTTTAGAAGACTCTTTCCAATTCAGTTTTTTGAGCGTCATCTCGCTGAATCAATACGTCCTGATGGAAGAGCACTGGGAAAAGCTAGAGATACAACCATTGCTCTTGGTTAGTTGTAAGCTTGGATTTTGAGAAAATTGCCATTTCCTACCATTTCCAGCTTTTGTTTATCATCTCGAGTTTGCTCGATTCATTTTGACTCTCAAAACTGAATTTGGGTATTGTCTATTCATTTTGACTCTCAAAACTGAATTTGGGTATTGTCTATTCATTTAAGGACCAGTATCATCTGCGAACGGATCAGCCCTGGCTAAGGTTGGTTCTACGGTAAGTGCCTTCACATTTAACCTTTTCATATGTGCTGGGATTTTGTGACGGTTTATTCTTAATTTTATATAGTGCAGACAATGTTGGCTGCTATTAAAATGGAGGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGGTTTGTCATTGTCAACAGCTAGATATTTTTGCTCCTTGTTTATCATAAACCTTATGATAACATGCTATACATCTTTGTGATATTGGGTCTATCTTTTCCAGCTGTCGATTTCCACATGCCCCCCATATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCAAGGTACTATTTCACATTTCTTGCAGTTCTACTTTGATCTATTGCAATTTGCAGATGATATTTTTCTGTTAAGTGTGGATGGAAATCAAGCTTTAAAAAGTATTTTGAATGCTATTGAAGTGTTTGAGATGCCTTTTCTCACTTTAAATTTAGAGAAAAGAGAGATTTTGTATGAAGGGTCTCAATAATCTTAGTTAAACACAGCAGCAGGATTTATACAAGGAATCGTGGCAAGTCTTGAGGCAGTTTCAAACATGATCTGCACTACAAGATTCAGGCTAGTGGGAAAATTATAACAGAAGAACTAACCCCACTAACTCAGAAAATAATAAATTCAATGAACAAATATAAAGCACAAGGCTGGACAATGAATGCTGTCTTTGCAGTTAATTGAACGACGCTGAAGTCTGATCTGATGAAGCTAGTGTAACGGTACCATTTGGGCTGAGATTCTAACATTCTCCTTTGGAGTGGGCGCTCTTGGACCAAACTTGGAAATGCCTCTTTGGGGAATCTGACTTTTAAGGACTCCTGGAAATGAATCATAGATAAATCCAGGTGCAATAATTCAATATGGAAGAATTTATTTCTCTCTTGGTGTGGAATATTATCTCTTGTTCAATCGGTACCCTCTATTATTCCCCAACATCATGTTTTTCTTTTCAGAATGCCTTCCAATATTGCTGATATTCTATAAAAGATCATTAGAGTCTTTTTAGACAGCAGTGACAGGGTAAAGGAAACCATTTGGTAAATTGGAAAATAACTTGCCTCCCTTTTGCCCCTGGTGACTCGTGGATTTGAAACTAGAGAAGTAGAAATATTTACCTCATGACTAAGTGCCTTTGTAGGTTTCCATAAGAGAGGGAGGCTCTTTGGACAGTATAAAATTGTGATGAGAGACTATGACCCCTTCATAATTGGGGTTGGAGAGAAAGTGATTTAAGTATAAACTATAAAAACATCTCTCATGCTGTTTACTAAACAAACAAGGCTCTTTTGGGGAGCAAAATGACACACTTCGGACCTCTGCTGGACCCCTTTCGCCTTTATTCCTGCTAACAGCAAAGGCAAGACTCTTTTGCAAGGCTAGAATGGTGAACAAAACTATTGGTTACTCAACGTGAAAGAGAAGTTCAGAGACACTGAAGTAGAAGAGCGGATATCCCTTATGGATGTTCTGGTTCGTGTGGTTCTTAGGGAGGGGATGATATTTTGCAATGTTCTCTTGATGGGTCATTAAGCTACTTCACTTTTCATTTTTTTTTTTTGGGAAAAAAAATTAATTTCAACCCTCAACTCTAAAAATTGTTAATGCATAATTTTCACGTGTAAACTACTTTAGATGCATGATAAGTTCTCTGTCTTCATTTTAAATTTTCTTAAAGGACTTACCTATTGCAAACTATTCTGCATGCGATATTGTGTTTCTCATTATTTTAGAAGTGATAGAAATCTGGCAAGAGGAATGCAATACACTTTTTTGATTTCTGCAATTTCCTTCAAATCTTTCTAACTAATCAAGAAACTGATGATGTGAATTCTTTAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCGTGGATGGCATACTTGGTATGTATTTTAAAGTCATGCATTGTCAATGTATTTTTATGCTAGAAGTATCTTAGTGTTTGAAGTGAGGTGCCTTTACCGATGTACCTGTATACTTTGCTTCTGAAATTTGTTCACTTGCATCATCCTTACTCTTATTGGACATTTTGTCTCTATAGCCTGATTTTTGGTCAGAATGCAGCTTTATTATTGTGGTTAATTATTTTAAATGAAATAGCAACTTGATATGCATTCCACAGGATATTTACTGTTTGGATGCCGACGGATCTCTATTCGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTGTGAGGTTTCAGGCTCTCAACTTGTTCATAACTTGATATATTTCTGCATAATTTTGTAGGTGTTATGGTTATGGCAGTAATGCTGGTTATAATGGGACATTTGTCCTCCACTAACATTAAGGATAGTTTTTCAGATCATAGATTGATACTTTCTGCTTTTAATCCTTTACATCTCAGATTTTTTTCCCTCTTTAGATTTCGTTTGTTGTTATTAAAATCTATAGGGGGCATTAAGTAATCATGTCCTGAAGTAAACTACCATATTATCAAGAGGAGGTCGTTTTGATGCTTGTAATTTGGTGTTTTCTTGTATTTCATTGTATTATATGTATCTTTTCCTTAGGCCTTTGCAAGTTGTCTCTTTTCCTTATGCCTTCACAAGTGAGTTTGGATTCGGAACGTATGATGATAATTTTTTTTTTTTTTTTTTGGGAAGGGATGAGGGTGGTACAATCAACCAATTGGTTAGATGGAACTTAGTGTCACTAAATCTCAAGATGATGGAGGTCTAGGAATTGGAGCTTTAAAATGAAGAAATACGGCACTCATTCTCAAGTGGGGTTGGAGATTTATAAATGAACCTCGTTCCTTTTGGAGAAAGGTGATTGTTAGTATACATGGGTATAACTCCTTTGGTTGGAATACGGCTGGAAGAAATTGGATGAGTTTTAAGAACCCTTGGATTAGTATTCCTAAAGTTTGGAAGCAGGTGGATTCTCTGTGAAATCTTTGTCTAAGCATTTAGGAGCTTTTTCACCTTTACGAAAGGAGATTTTTGTGGCTTTATGGAAATCCAATGTACCAAGAGAATAAACATCCTTATATGGATTATCTTACTAGGCAATCTTAATAATACTTTCAGTGCTTCATCAAAAAAGTTTTCCTTAATCATCTCTCATGCCTTCTGTGTTTGCCCGATATGTTGCCTTAACCATGTGTTTTTGTTTTTATTTTTATTTTAGTTACTCTCAGTTTTGTTAACAAATGTTTGATACTTGTCTGACATGTGTCGGACACAGACATGCTAGCCAAACTAAAGTGTTCATGCTTTTATAAGGATTCCCCTTACTTTGATATCACATTAAACAAAATAAGGTTATATGGAGTATCCCCACCGATTTGAGATGGTGGTGATCTCCTTTACTATGATCTACCAACCACACATTCACACACAAGATAGCCCTTAAAGTGCAGAGACAAAATAATTATATACTAACAACTGTGCTAACGGCTACTAAGAGGTTGGTGATGATTTTCCCTTTTTGCCCCTCTTACTATATATATTTTTTACTATTGCGGATCTCACATTACTGCTTGGGGTGGGAGGCCACCTTGTCTTAACCTGACATAGAGGTAGCATGTGGCTTGAGTATTTTAAGAAATATTCAGTAAGTGACCCCACTATTGGTGGTTAAATGCAAGAACATGCAAATGTAATGACGGGACCTATCATATCAATCTCTTTTCCTACGGGACTATCCTAATGGGCAGCTTGGATGTGTACCTTATACTCTACACATAGCCCATACATGCGAGTATGGGCTCACCAGACAATTCGCACACTGCTGGGCCCCTTTTCTTGTCGAGCGAGCCTTTTCTGGTAGCTCCTTATGCCGGACACCCATTAGAATTAGTAACCGTCACAACAACATTATGTAAAATACAATGATACTTCACCTGCCTAGTGGTGTACGCGTCCGTACCCTCGTGATGGAATAGGGGTATCCCCCAATGCATGTGCACATGAGGTCCCAATATTTTTCCGTTTTCAACATTATTAAATATAACTCCGCTATCATTTCTCATTTAGATCATATCATATCGATTCTCATTTTTTAGTCCTCATATCATATCATTTCTCTATCATACATAATTCTAATGGGGTTATCTTTCATGTCATTTATATCATGGTGTATACACACAATTTAGGAAACATGACATAATGTTCTATGCTTTTAACATAACATTTCATCATATACATATCATACCATTTCTTTTAACATACACTTCGCCTAACTAAGTCAGTGTGCCCATTGCTTGGGTCTCCAGAAACACCTTAGATAAGGTTCCAAACTCTTGTTGACGATCTAAGTTTGCTCATCAGTCTGTGGGTGGTAGGCTTTGTTGCGTTATAGTTGGGGGACTTGAAGCGTGAAGGATTCAACTAAAAGTTGCTGATGAATACCTTGTCTCTGTCAGACACTATGGATCGAGGAAAACCAAGGAGCTTGACTATCGATTCGTGAAGAGAGAGATAATTGTCTTCGTGGTACAAGGATGGTTTAACATCAAGAAATAGGCATGTTTAGGCACTCCACCAGAATTAGAATTGTGTCATTCCTGTTAGATCAGGGAAGACCTTCAGTGCAATCCATGGTGAATTCCTTTTAGATTTTATCAGGAATGGGTAGTTGTAGTAAGAGTCCCGTTGGTGACATGGCCATCGTTTTGTTCCATTGGCAAATTCCACATTTCTCCATGTATTTCTTTACATCCCTCTTCATTCCTTGTTAGTTCACAAGAATCCTGAGTGCCTCCCCCTAATCGAGTCATGATACGTATGAAGCACCGCTGGTATGGTTTGGTATACAACCATTTTTTTCCTTATTGAGAAGAGTATTTAGGTGAATTGAAAACTTGTGGTGGATGACAGGATCATTCTCAATGTCTGAACAGATACAACAAAGATGTTCATCCTCACTGATTTCTTTCTCGACAATTTCAAGATCTAGTATGGTTGGAGTTGTTAAGTTTGCTAAATGAACTGTGGGTGGCCATACATGAAAGAGAATCTGCTACTTTATTCTTGAGGTTTGGCTTGCATTGGATCTCAAAGTCATGGTCTAGCAGTTTCAAGACCCACTTTAGATACTTCCGCTGAATTATCTTCTATTCTATCAAGTATTTCAATGAATGCTGGTCTATCTTCACAATAAAATGGTGTTCTGAACTGCCATAACCATGGTCATCAGTTCTCGCTCATATTTCGATTTGGCTTGTGCTTGTGCCAATGAAGTATGACTAAAATAGGCAATCGAATGGTGACAACCCTTAGACTTGTCCCTTAGGCATCCATTTCCACCACGAAATGATTACATAATCAGGGAGAGCCATCATAGGCAGTGTGACCACAGCTTGCTCTAGAGATTTTAAGGCCTGAAAGGCTTCATCACTTCATCCAAAGGCAATGTTTCTTGACATATGGTGTAATGGGCAATGCAACCATATTTGGGTATGAACGTCAATAGTAACTGGTTAGCCCTAGGAAACCTCTCAGTTCTCGAACATTCACTGGTTGAGACCCTTTAATTTTCTAACATTTTCAGAGCCAACTTCTACACCTTTCACAAAGACCAAATGTCCTAAATAATTGGTTCGATCCCGTGCAAACTTACACTTCTTCAAGTTGGCCAACAAGGAACTGTCACACATAGTATTCAAAATCACCGTCAAGTGTGTCACATGAGTCTCCAAGTTAGTGTTGTAAATCATAATATTGTAAAAAAAGCACAAGAACAAATCTTCTTAGGAAAGGGTTAAATGCTTGGATCATAGCGGCTAGGATGTGGCTGGAGCATTTTGTTAGGCCAAATGGCATCCAAATGGCATCACTAAGAACTCATGGTAGCCTTCAAGTGTCTTAAATGCAGTTTTAAGAATGCCTGATTTGTAAATCGAAATATGATGATACCCTGACCTCAAATCAAGTTTCGAATATACTCTGGACCTGCGTAGTTCATCAAACAACTCTTCAATGACTTGGATTGGGAACTTGTCTAAAAGTGTAGTTTCCTTCTAAGTTCTGTAATCTATCAAGACCTTCCACCTTCGTTGTTACTACAAGACTAGGCTTGAATAGGGGCTAGTACTTGGCTTAATGATTCCAGTCGTAAGCATCTTGTTATCTCATCTTTCTAGACCACTTGGTAGTGATATGGGTGCACATTGATCAGCTCGTAGCCTTCCTTCAATTGAATACGGTGATCTAGATCGCGCCTCGGGGGAATTTGGGATGTTGATTGGAAAACATCGGTGTAGCCCGTCTAGAGCTTGTCCACTTCACTAGGAAGATTTGAAGGGGGGATTGCGTTTAGGAAATTAAAATCTTCAACTTGTTCTATTATCTTCTTAGAGCTCCACGTGGAAGGGCCACGCTGTTTCCATGACCGTTTGAGACTCTCTATCAAAGCTTCTTTTTGGGTAAGAGAAGGGTCATCCTCGATCAGGATCCTTGAATCCCCAATTCTGATGGCTAATGCCAGGCCCTTGTTGTCAACCTTAGGCAATCCTAGTGTTTGGAGCCATTGCATTCCTTATAATATCAGATTGATCCCTTTAGTTCCAGAGGTATACGATTTAATCATTAGACTTGCAATAGAAACCACGAGTCCCGTGCATACTCCCTTACCTCTCATTGCTGTTCTTACCCCCTTAATAACCCCATAATTGGTCATTTCAAAGACGAGCATTTTGATCTTGATGATAGATGAAATTGTGTGTAGTATCGCAATCAACAAAGACAATTACCTTTGCATGCTCGGTTCACCCCACTATCTTGATGGTGCCTGGATTGGATAATCTCCTCAATAGCATTTAAGACAACTCTACTACTTTGATCATGGTTTATTCTAGCTTGTCGTTCCTAGAATCGATGTCCATTTCTTAAGCTCCTGTATCATCATGCACAACTAATAGCTCGAGTTATTTGCTCTTGCATTTATGGCCTATGGAGCATTTCTCATCACATCTATAACAAATGGCCTTTTCACATTATGATTTTATCTTTAACGTCTATCAATTGTTAGCAATGTATGTCTTTTTGTGAGCTGCGCTGAAGGTCGGATGGGGTTGGGCTCTATTGTTTTAGGTGGGATTTTGGCTGGGGTATCAAATTAATTAATACTTGCACCCGTGTAAGTCCTTCAATTTGTATTCTCTTGGAGTGGTTTCCCTTTTTTTCTTGGGTTCAGGTTCTGAGACTAATCGATGGCCAATGCTGCAATGGCGCATCGAGTTTCCTTTGTGGCTTGCCTTTGTTCTTTGGTGGTGTTTAAAGTACTAGTCGATATTCTTGTGTTTCTGTTGTAACCTTCTGTTCCACTGATTGAACATTCGTGCAATGATGTCATTTTCTTAATTGTCTAGTTTATCTCTGGTAGCCTCTGTGTCTCTTCTCTCACCTTGTTTCTAGTTCTCTTAGACTCCTCCAAATGTTCCTGAAGGTGTTCTCAAGCCATCTTTCCTAGATGACACGCAAAATACCAGAAACCCCAAAAGCTTGGAAGCTCGTATGTTATTTTCCAAAAGCTAGGCAACTTATTACTTTCTGCTGCTAATTCATTTTTGTTGGCTGGAATTTCCTTTTGATAGTCTCGCTGATCGTCTTTCTGCTTTGTTGGTTGGTTCTTGAATTTGGTGGCTTTTCTTTGGAGGTTTTTTTTTCTTTGGCGTTGTTGGTTGGCTTTGGTTCCTTGTGTCACAATTGTACTCTTACTCTTGTGGCAGCAGGACAACGATTGTGCAGCACTTGTTCTATCCCGGCGAACAAGTCAGTCATACGAAAGTCGGACTTTGTGAACAATCTTAGTGTATGATTAAGTCTCAGGTCACGTTTGAAAGAAATATTTTATAAAGTGTGAGTGAGGAAATGTGTTGAAAACAATTTGAAAGAAATCAATGTTATAAGCTAAAAGCAAATAAGTAACGACGACTTTGATAGCATATAACTTGGGTAGGAAAAATTGACTAGTCACATCCCCCTATAGTACATTTTGGGGCATTTTAGCATTTACGGGTCTATACATGATTTTAGAGACTGGTCATACACTCTCATATTGATTTTTACTCCTCTATAGGGCTCCAGGGTTTAGAGTGTGTCTCGCACCCAACAGGCTAGGGTGTTGAGGGATGAACTAGTCCCTGTCCTTTGTTTCTCACTTCTTTTGGAAAATTCATGACTGCCATGATTTATGCTGGAAATATTTGATGGGCATAAGCATAATCCGAATTAAGTAGCCTCATTGGAGTCTTTATGTAACAACTTTGGTTTTGTATAAAACTATTTATCCTCCCTTCAGCAACTGGTGTTATCTTTTGTTTATCCAGCATACCGGTGATTAATTGTTATTTTATCATTTGAAAGTCCTTATCATTGCTCTTAGAAAGCTGAACAATGTTAATATTCTTGTTTGTTGACTTGGTAGTTTATAGTACTTTAAAACGATTGGTACCCATTTTCTCTGTTGAGCCATATTTTAAACTTCTTCCCGGTTTAATTTCCTAGTGCAAATCCCTTTTGTGGCTCTAAATGACGATGGAAAAGTAGTATTTGTCTCTGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAAGCTGTCAATAAAGAGAAAAGGAAACTGAAATTGAACTCCCTTCCTTTCTCATTAACATGCCTACTCCACAAGAATTACATCTTGGCTGACCCTACTGCGGAGGAGGAGTCTGTCATGGAAACTATTGTAACCGTGGTCTTGGATTCATCTGGTCAACTAGTGTCCTTCTACAAACCGGGTGGATCTGTGCTTGCCTATACATCAGCTGTTCAGGTTGGTCTCTCTTTCTCTGGCATGTTTATTAATGGAATCTAATTCGTTAGAGAATGGATTAGTTCCCTGGATTTCTTCATCCTTCACATTTTTTGTTTGCAAAGTTTGGTCAAGCTAGTTGGATTTTCAATATGATGTTGGATTATAAAAATAATAATGTTTGATTTTTTAAAAAACATTATTGAAAATTCTAAAAATGTTTAAGAACACCTAATCACAGTAGAGGAAACAAGCTTTTAATTTACTCAATAAATAATGAATTGACTTGATGATTTGTATTATCATCATTACCATCTTTACTTTTCAAGAAACACTTCCTTTGATTTGTGAAAAAGTTATAATATCATCCAAGCCCAAAAGCTTCTCTGGTTTGCTTATCTTGCCTTAGGATGCATATTCTTTATAAGTAAGATATTTTGGAAGTGATTTGGTAAGGAACTCGAAAAATAATTAATTGACTTGATGGTTATATTAATATTAATTCTCGTCATCATTGTTTGTAATATCATCCAATTCCAAAAGTTTATCTTGGTTTAGTACGCATCTTTATGTAAACTGATATTTTTACTCTAGAGTACGAACATCTTTGAGAGTGATTTTGAAATGGTTAAACTTATTTTTATCAAATTCAAAATCACTCAAAAACATGATTTAAATTTTTTACGGTAAGAAAATTGTGTTCAAAAGTGTAAAATTAAACATTAAATGGATTTTGAATGATTAAAGTCATCTTGATGAAAATGATTTTAACTGTTTCAAAATACTTTAATTGGTATATCATGATTTACGTGCTCTAATCCGTATGGGGATGGCGTGCTTGCAGGATTGTGTTGCACTGACGAGACAAAGATCAAAAGAACTACAGATGATTTTGGATGAAGCAATTTCTGGTATGGAAATTGACTAAGTTTTAGGGAGGCCTTCTATATTTTTTTTTTCCTGGTTTAATGAATGAAAAGCTGAATGGTTTGTAGGCTTCCAATTATATACTTAGTTTGGTTGTCTAAAGAATTTTGGTGATGATATTTGTTTTCCCTGGAGATCGTTTTTCTTAGAATTTGGTCTCAGGAATCAATTTTGGTGCAGGGGTCGGATTTCTACATTCAAATATCTCTCTATTACTAATTGAACTTCATTTCTCGCTTTTTATTTGCATCAACTTGATAACAATGGAATGGAACCTGACTGATAGGCAAATAGAAGTTTACATTATGATAGAAAACATAGGGATGCCATATGCTCTGCCAAAAATTGTCTACTTTTTCTTGTTCTATTGCATGTATGTGGGACTCTAATGATATATTCAATATATCTTACTAGAAACAAG

mRNA sequence

CAGTCTTTTCGTTCTTCATTTTTTCTGAAACGTCCTACCTTTCTTGCGCTCATCCCTCCGATTACCAGCTACTGCACCCCAACCCGCACGCCGCTGTCTCAGCCGCCTGAAAAGCTCGCCGCTGCTACCCCCCGTGTCACGCTCTCTCGTCTCTTTGCGCAATCAGTGCTACTTATAGGCTTCAGCTCCTAACCGCCGCCACTGATAAGAGTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGGAAATGGAGGTTGATGCTTTTAGAAGACTCTTTCCAATTCAGTTTTTTGAGCGTCATCTCGCTGAATCAATACGTCCTGATGGAAGAGCACTGGGAAAAGCTAGAGATACAACCATTGCTCTTGGACCAGTATCATCTGCGAACGGATCAGCCCTGGCTAAGGTTGGTTCTACGACAATGTTGGCTGCTATTAAAATGGAGGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGCTGTCGATTTCCACATGCCCCCCATATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCAAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCGTGGATGGCATACTTGGATATTTACTGTTTGGATGCCGACGGATCTCTATTCGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTTGCAAATCCCTTTTGTGGCTCTAAATGACGATGGAAAAGTAGTATTTGTCTCTGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAAGCTGTCAATAAAGAGAAAAGGAAACTGAAATTGAACTCCCTTCCTTTCTCATTAACATGCCTACTCCACAAGAATTACATCTTGGCTGACCCTACTGCGGAGGAGGAGTCTGTCATGGAAACTATTGTAACCGTGGTCTTGGATTCATCTGGTCAACTAGTGTCCTTCTACAAACCGGGTGGATCTGTGCTTGCCTATACATCAGCTGTTCAGGATTGTGTTGCACTGACGAGACAAAGATCAAAAGAACTACAGATGATTTTGGATGAAGCAATTTCTGGTATGGAAATTGACTAAGTTTTAGGGAGGCCTTCTATATTTTTTTTTTCCTGGTTTAATGAATGAAAAGCTGAATGGTTTGTAGGCTTCCAATTATATACTTAGTTTGGTTGTCTAAAGAATTTTGGTGATGATATTTGTTTTCCCTGGAGATCGTTTTTCTTAGAATTTGGTCTCAGGAATCAATTTTGGTGCAGGGGTCGGATTTCTACATTCAAATATCTCTCTATTACTAATTGAACTTCATTTCTCGCTTTTTATTTGCATCAACTTGATAACAATGGAATGGAACCTGACTGATAGGCAAATAGAAGTTTACATTATGATAGAAAACATAGGGATGCCATATGCTCTGCCAAAAATTGTCTACTTTTTCTTGTTCTATTGCATGTATGTGGGACTCTAATGATATATTCAATATATCTTACTAGAAACAAG

Coding sequence (CDS)

ATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGGAAATGGAGGTTGATGCTTTTAGAAGACTCTTTCCAATTCAGTTTTTTGAGCGTCATCTCGCTGAATCAATACGTCCTGATGGAAGAGCACTGGGAAAAGCTAGAGATACAACCATTGCTCTTGGACCAGTATCATCTGCGAACGGATCAGCCCTGGCTAAGGTTGGTTCTACGACAATGTTGGCTGCTATTAAAATGGAGGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGCTGTCGATTTCCACATGCCCCCCATATGCTCTCCAATTGTTAGGCCTGGGAGACCAGCTGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCAAGTTCTGGGATGATTGATCTGAGAGAACTATCTCTTGTTAAAGGAAAAGCTGCGTGGATGGCATACTTGGATATTTACTGTTTGGATGCCGACGGATCTCTATTCGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCACTTGCAAATCCCTTTTGTGGCTCTAAATGACGATGGAAAAGTAGTATTTGTCTCTGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAAGCTGTCAATAAAGAGAAAAGGAAACTGAAATTGAACTCCCTTCCTTTCTCATTAACATGCCTACTCCACAAGAATTACATCTTGGCTGACCCTACTGCGGAGGAGGAGTCTGTCATGGAAACTATTGTAACCGTGGTCTTGGATTCATCTGGTCAACTAGTGTCCTTCTACAAACCGGGTGGATCTGTGCTTGCCTATACATCAGCTGTTCAGGATTGTGTTGCACTGACGAGACAAAGATCAAAAGAACTACAGATGATTTTGGATGAAGCAATTTCTGGTATGGAAATTGACTAA

Protein sequence

MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISGMEID

Homology

[Close]

BLAST of CmoCh03G000610 vs. ExPASy Swiss-Prot
Match: Q96B26 (Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-46
Identity = 99/284 (34.86%), Postives = 166/284 (58.45%), Query Frame = 0


Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKM 79
           F+ + P++++ R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   PS ++PD+G +  +  +PP+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPFVALNDDGKVVFVSEEEG 199
            +  GK  W+ Y D+ CLD DG++ DA   +  AA  ++Q+P V +N++  +        
Sbjct: 125 CISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALA------- 184

Query: 200 GENFEKEAVNKEKRKLKLNSLPFSLT-CLLHKNYILADPTAEEESVMETIVTVVLDSSGQ 259
                 E   K+K  L + + P + +  +     ++ DPT EEE +    +T+V+D  G+
Sbjct: 185 ------EVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 244

Query: 260 LVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISGME 303
           L   +KPGGS L   + +QDC++    R KE++ ++DE I  M+
Sbjct: 245 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274

[Close]

BLAST of CmoCh03G000610 vs. ExPASy Swiss-Prot
Match: Q9D753 (Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.6e-46
Identity = 100/283 (35.34%), Postives = 163/283 (57.60%), Query Frame = 0


Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKM 79
           F+ + P++++ R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   P +++PD G +  +  +PP+CS   R G P E A V S+ ++D + +S +I   +L
Sbjct: 65  EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPFVALNDDGKVVFVSEEEG 199
            +  GK AW+ Y D+ CLD DG++ DA   +  AA  ++Q+P V +N++  +        
Sbjct: 125 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALA------- 184

Query: 200 GENFEKEAVNKEKRKLKLNSLPFSLT-CLLHKNYILADPTAEEESVMETIVTVVLDSSGQ 259
                 E   K+K  L + + P + +  +     ++ DPT EEE +    +TVV D  G+
Sbjct: 185 ------EVNLKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGK 244

Query: 260 LVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISGM 302
           L   +KPGGS L   + +QDC++    R KE+  +LDE I  M
Sbjct: 245 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSM 273

[Close]

BLAST of CmoCh03G000610 vs. ExPASy Swiss-Prot
Match: Q2KHU3 (Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 7.5e-44
Identity = 97/284 (34.15%), Postives = 163/284 (57.39%), Query Frame = 0


Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKM 79
           F+ + P++++ R L E+ RPDGR LG+ R TT+ +G + +A+GSAL K+G+TT++  IK 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKA 64

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   P  ++PD+G +  +  + P+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPFVALNDDGKVVFVSEEEG 199
            +  GK AW+ Y D+ CL+ DG++ DA   +  AA  ++Q+P V +N++  +        
Sbjct: 125 CISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALA------- 184

Query: 200 GENFEKEAVNKEKRKLKLNSLPFSLT-CLLHKNYILADPTAEEESVMETIVTVVLDSSGQ 259
                 E   K+K  L + + P + +  +     ++ DPT EEE +    +TVV+D  G+
Sbjct: 185 ------EVNLKKKSCLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGR 244

Query: 260 LVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISGME 303
           L   +KPGGS L   + +QDC++    R KE++ ++DE    M+
Sbjct: 245 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVFKSMK 274

[Close]

BLAST of CmoCh03G000610 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-32
Identity = 83/255 (32.55%), Postives = 142/255 (55.69%), Query Frame = 0


Query: 38  RPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVD 97
           R DGR   + R   +  G +S ANGSAL ++G+T ++  +K+EV  P  +SP+EG +AV+
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 98  FHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCL 157
             + P+  P   PG P E A  +S+ +   I  S MIDL EL + +G+  W+ ++DI+ L
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVL 142

Query: 158 DADGSLFDAALLSAAAAFSHLQIPFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKL 217
           D DG+LFDA+++ + +A S  ++P   + DD               E E + ++   L +
Sbjct: 143 DHDGNLFDASMIGSVSALSITEVPKAEVVDD---------------EVEVMEEDTEPLAI 202

Query: 218 NSLPFSLTCLLHKNYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS-AV 277
           N  P S+T      Y+L DP  EEE +M+T +TV +  SG++ +  K  G +  +    +
Sbjct: 203 NDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK--GELGDFPEHLL 260

Query: 278 QDCVALTRQRSKELQ 292
           +D + L  ++++E++
Sbjct: 263 EDAIDLATKKAEEVR 260

[Close]

BLAST of CmoCh03G000610 vs. ExPASy Swiss-Prot
Match: Q10205 (Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp43 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-32
Identity = 82/267 (30.71%), Postives = 145/267 (54.31%), Query Frame = 0


Query: 20  FRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKM 79
           F+++ P Q+    L + +R DGR++ + R+  I    +S+ANGSA+ + G    +  IK 
Sbjct: 17  FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKA 76

Query: 80  EVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E+  P   SP+EG I  +  + P+CS   +PG P++ A V+S++L  T+  S +I+L+ L
Sbjct: 77  EIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSL 136

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPFVALNDDGKVVFVSEEEG 199
            + + KAAW+ Y DI CL+ DGS FD A  +  AA   +++P    ++D + V       
Sbjct: 137 CIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVI------ 196

Query: 200 GENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAEEESVMETIVTVVLDSSGQL 259
                    +   R ++L++   S +  +  + +LADPT EEE +    +T++L+SS  +
Sbjct: 197 -------CASTLTRPVQLSTEVRSFSWSVFDDKLLADPTDEEEDLSTEFLTIMLNSSKNI 256

Query: 260 VSFYKPGGSVLAYTSAVQDCVALTRQR 287
           V   K GG+ +     ++ C+ + R +
Sbjct: 257 VKIIKLGGTHI-QPLLLKKCIEVARSK 269

[Close]

BLAST of CmoCh03G000610 vs. ExPASy TrEMBL
Match: A0A6J1ESF5 (exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE=4 SV=1)

HSP 1 Score: 584.7 bits (1506), Expect = 2.2e-163
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240
           PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE
Sbjct: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of CmoCh03G000610 vs. ExPASy TrEMBL
Match: A0A6J1HVL5 (exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4 SV=1)

HSP 1 Score: 577.4 bits (1487), Expect = 3.5e-161
Identity = 301/304 (99.01%), Postives = 302/304 (99.34%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMP ICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPSICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240
           P VALNDDGKVVFVSEE+GGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEKGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of CmoCh03G000610 vs. ExPASy TrEMBL
Match: A0A1S3CEE1 (exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 568.9 bits (1465), Expect = 1.2e-158
Identity = 291/304 (95.72%), Postives = 301/304 (99.01%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240
           P VALNDDG+VVFVSEEEGGENFEKE VNKEKRKLKLNS+PFSLTCLLHK YILADPTAE
Sbjct: 181 PVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAE 240

Query: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDC+ALTRQRSKELQ+ILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of CmoCh03G000610 vs. ExPASy TrEMBL
Match: A0A1S3CD66 (exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 568.9 bits (1465), Expect = 1.2e-158
Identity = 291/304 (95.72%), Postives = 301/304 (99.01%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 13  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 72

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 73  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 132

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 133 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 192

Query: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240
           P VALNDDG+VVFVSEEEGGENFEKE VNKEKRKLKLNS+PFSLTCLLHK YILADPTAE
Sbjct: 193 PVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAE 252

Query: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDC+ALTRQRSKELQ+ILDEAISG
Sbjct: 253 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 312

Query: 301 MEID 305
           MEID
Sbjct: 313 MEID 316

[Close]

BLAST of CmoCh03G000610 vs. ExPASy TrEMBL
Match: A0A6J1DFM7 (exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 PE=4 SV=1)

HSP 1 Score: 562.4 bits (1448), Expect = 1.2e-156
Identity = 288/304 (94.74%), Postives = 299/304 (98.36%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240
           P VALNDDGKVVFVSEEEGGENFEKE VNKEKRKLKL+S+PFSLTC+LHKN+ILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240

Query: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300
           EES+METIVTVVLD SGQLVSFYKPGGSVLA+TSAVQDCVALTRQR KELQ+ILDEAISG
Sbjct: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of CmoCh03G000610 vs. NCBI nr
Match: XP_022928740.1 (exosome complex component RRP43 [Cucurbita moschata])

HSP 1 Score: 584.7 bits (1506), Expect = 4.5e-163
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240
           PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE
Sbjct: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of CmoCh03G000610 vs. NCBI nr
Match: XP_023544252.1 (exosome complex component RRP43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 582.0 bits (1499), Expect = 2.9e-162
Identity = 303/304 (99.67%), Postives = 303/304 (99.67%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240
           P VALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of CmoCh03G000610 vs. NCBI nr
Match: KAG7033523.1 (Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 580.9 bits (1496), Expect = 6.5e-162
Identity = 302/304 (99.34%), Postives = 303/304 (99.67%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240
           P VALNDDGKVVFVSEEEGGENFEKEAVNKE+RKLKLNSLPFSLTCLLHKNYILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEEGGENFEKEAVNKERRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of CmoCh03G000610 vs. NCBI nr
Match: XP_022967860.1 (exosome complex component RRP43 [Cucurbita maxima])

HSP 1 Score: 577.4 bits (1487), Expect = 7.2e-161
Identity = 301/304 (99.01%), Postives = 302/304 (99.34%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMP ICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPSICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240
           P VALNDDGKVVFVSEE+GGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEKGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of CmoCh03G000610 vs. NCBI nr
Match: XP_008460772.1 (PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo])

HSP 1 Score: 568.9 bits (1465), Expect = 2.6e-158
Identity = 291/304 (95.72%), Postives = 301/304 (99.01%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFPIQF+ERHLAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 13  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 72

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 73  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 132

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 133 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 192

Query: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240
           P VALNDDG+VVFVSEEEGGENFEKE VNKEKRKLKLNS+PFSLTCLLHK YILADPTAE
Sbjct: 193 PVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAE 252

Query: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300
           EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDC+ALTRQRSKELQ+ILDEAISG
Sbjct: 253 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 312

Query: 301 MEID 305
           MEID
Sbjct: 313 MEID 316

[Close]

BLAST of CmoCh03G000610 vs. TAIR 10
Match: AT1G60080.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 444.9 bits (1143), Expect = 5.2e-125
Identity = 228/307 (74.27%), Postives = 270/307 (87.95%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60
           MG+P+AA  DLS+EMEVDAFRR+FP++FFERHL+ES+RPDGR LGKARDT + LG VS+A
Sbjct: 1   MGIPDAAQ-DLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTA 60

Query: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120
           +GSALAK+GSTTMLAAI+MEVMTPS +SPDEGCIA++FHMPPICSP VRPGRPAEAAPVI
Sbjct: 61  DGSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SK+LSDTI SSGMIDL+EL LV GKAAWM YLDIYCLDADG+LFDAALL+A AAFS+LQI
Sbjct: 121 SKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQI 180

Query: 181 PFVALNDDGKVVFVSEEEGGEN---FEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADP 240
           P VALND+G++V V+ E+  +N    EKEAVNKEKRKL L ++PFSLTC+LHKNYILADP
Sbjct: 181 PIVALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADP 240

Query: 241 TAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEA 300
           T EEES+M+T+VTVVLDSS Q+VSFYK GG+ LAY+SA++ CV L R+R+KEL+ IL E 
Sbjct: 241 TTEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKELKQILGE- 300

Query: 301 ISGMEID 305
              M+ID
Sbjct: 301 ---MDID 302

[Close]

BLAST of CmoCh03G000610 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 102.4 bits (254), Expect = 6.4e-22
Identity = 82/280 (29.29%), Postives = 135/280 (48.21%), Query Frame = 0


Query: 28  FFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKMEVMTPSIE 87
           F +  +A+ +R DGR     R   +  G +  ANGSA  ++G T ++A++K E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 88  SPDEGCIAVDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELSLV 147
            PD+G +AV     P   P    R G    +E A  + + L    S +G  I+L  L + 
Sbjct: 70  QPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIK 129

Query: 148 KGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPFVALNDDGKVVFVSEEEGGEN 207
           +GK  W  Y+D   + +DG+L DA   +  AA ++  IP        KV   +E    E 
Sbjct: 130 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIP--------KVNVSAEVADDEQ 189

Query: 208 FEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAEEESVMETIVTVVLDSSGQLVSF 267
            E +  ++E  +   +S+P  +T      + + D TAEEES M + V++ ++ +G +   
Sbjct: 190 PEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGL 249

Query: 268 YKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISGME 303
            K  GS L   S + D +++ +  ++ L   LD  IS  E
Sbjct: 250 TKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAE 280

[Close]

BLAST of CmoCh03G000610 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 102.4 bits (254), Expect = 6.4e-22
Identity = 82/280 (29.29%), Postives = 135/280 (48.21%), Query Frame = 0


Query: 28  FFERHLAESIRPDGRALGKARDTTIALGPVSSANGSALAKVGSTTMLAAIKMEVMTPSIE 87
           F +  +A+ +R DGR     R   +  G +  ANGSA  ++G T ++A++K E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 88  SPDEGCIAVDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-IDLRELSLV 147
            PD+G +AV     P   P    R G    +E A  + + L    S +G  I+L  L + 
Sbjct: 70  QPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIK 129

Query: 148 KGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPFVALNDDGKVVFVSEEEGGEN 207
           +GK  W  Y+D   + +DG+L DA   +  AA ++  IP        KV   +E    E 
Sbjct: 130 EGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIP--------KVNVSAEVADDEQ 189

Query: 208 FEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAEEESVMETIVTVVLDSSGQLVSF 267
            E +  ++E  +   +S+P  +T      + + D TAEEES M + V++ ++ +G +   
Sbjct: 190 PEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICGL 249

Query: 268 YKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISGME 303
            K  GS L   S + D +++ +  ++ L   LD  IS  E
Sbjct: 250 TKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAE 280

The following BLAST results are available for this feature:

BLAST of CmoCh03G000610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96B26	1.2e-46	34.86	Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1	[more]
Q9D753	3.6e-46	35.34	Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1	[more]
Q2KHU3	7.5e-44	34.15	Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1	[more]
Q8TYC2	1.3e-32	32.55	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]
Q10205	1.3e-32	30.71	Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]

BLAST of CmoCh03G000610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESF5	2.2e-163	100.00	exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE...	[more]
A0A6J1HVL5	3.5e-161	99.01	exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4...	[more]
A0A1S3CEE1	1.2e-158	95.72	exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]
A0A1S3CD66	1.2e-158	95.72	exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]
A0A6J1DFM7	1.2e-156	94.74	exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 P...	[more]

BLAST of CmoCh03G000610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928740.1	4.5e-163	100.00	exosome complex component RRP43 [Cucurbita moschata]	[more]
XP_023544252.1	2.9e-162	99.67	exosome complex component RRP43 [Cucurbita pepo subsp. pepo]	[more]
KAG7033523.1	6.5e-162	99.34	Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022967860.1	7.2e-161	99.01	exosome complex component RRP43 [Cucurbita maxima]	[more]
XP_008460772.1	2.6e-158	95.72	PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo]	[more]

BLAST of CmoCh03G000610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60080.1	5.2e-125	74.27	3'-5'-exoribonuclease family protein	[more]
AT3G07750.1	6.4e-22	29.29	3'-5'-exoribonuclease family protein	[more]
AT3G07750.2	6.4e-22	29.29	3'-5'-exoribonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 48..181 e-value: 8.5E-22 score: 78.1
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 221..268 e-value: 2.1E-4 score: 21.2
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 16..303 e-value: 1.5E-82 score: 279.1
None	No IPR available	PANTHER	PTHR11097:SF28	SUBFAMILY NOT NAMED	coord: 14..304
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 14..304
None	No IPR available	CDD	cd11369	RNase_PH_RRP43	coord: 21..294 e-value: 2.04454E-115 score: 331.444
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 18..243
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 215..298

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G000610.1	CmoCh03G000610.1	mRNA