CmoCh02G017990 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G017990
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Fe2OG dioxygenase domain-containing protein
Location	Cmo_Chr02: 10224373 .. 10225037 (-)
RNA-Seq Expression	CmoCh02G017990
Synteny	CmoCh02G017990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGGGGGCAACTGATCGAGCGCGGCCGGTGGTGGTGCCAACGGCGGCGGCTGTGACGGTGACGGACCCAATGGGGAAGGAAGCGGTGTTGGCGTGGTTCAGAGGGGAGTTCGCGGCGGCGAACGCGATTATTGATGCGCTGTGTGGACATCTGGCGCAGGTGAGTGACGATGGAGGATCGGAGTACGAATCAGTGTTCGCTGCGATTCATAGACGGCGGCTGAATTGGATTCCGGTCCTGCAAATGCAGAAGTATCATCCGATCGCTGACGTTGCCTTGGAGCTACGGAAAGTGACGGCGGAGAAAAAGAGAAAGAAGAAGAATCGGGATGAGGAAGAGGAGGAGCAGAAAGGAGGCGATGAGGCGGCGGTAGTGGTGGTCGAGGACGACGGCGACGGCGATGGCGACGGTGATGTCGAAATGGAGGAAAAGAAGAACGAGATTAAGAAAATGAAGGAAGAGGAGGAAAATGACGGAAAGATTTGTTCGGATGAGAAGGAAATCGTCGAAGAGACAACGATCGAGATTAACGAAACCGATGGCGGAAGAAATGAAGCTCTTCTGGATCCAATCGAAGAGGAGGATTCAATTCGAAGCGAAATAACTGATTCAGGTAAGTTTCATTCTCTTTTCAATTTTTGATTTCTACAGATCTCTAA

mRNA sequence

ATGGCGGCGGGGGCAACTGATCGAGCGCGGCCGGTGGTGGTGCCAACGGCGGCGGCTGTGACGGTGACGGACCCAATGGGGAAGGAAGCGGTGTTGGCGTGGTTCAGAGGGGAGTTCGCGGCGGCGAACGCGATTATTGATGCGCTGTGTGGACATCTGGCGCAGGTGAGTGACGATGGAGGATCGGAGTACGAATCAGTGTTCGCTGCGATTCATAGACGGCGGCTGAATTGGATTCCGGTCCTGCAAATGCAGAAGTATCATCCGATCGCTGACGTTGCCTTGGAGCTACGGAAAGTGACGGCGGAGAAAAAGAGAAAGAAGAAGAATCGGGATGAGGAAGAGGAGGAGCAGAAAGGAGGCGATGAGGCGGCGGTAGTGGTGGTCGAGGACGACGGCGACGGCGATGGCGACGGTGATGTCGAAATGGAGGAAAAGAAGAACGAGATTAAGAAAATGAAGGAAGAGGAGGAAAATGACGGAAAGATTTGTTCGGATGAGAAGGAAATCGTCGAAGAGACAACGATCGAGATTAACGAAACCGATGGCGGAAGAAATGAAGCTCTTCTGGATCCAATCGAAGAGGAGGATTCAATTCGAAGCGAAATAACTGATTCAGATCTCTAA

Coding sequence (CDS)

ATGGCGGCGGGGGCAACTGATCGAGCGCGGCCGGTGGTGGTGCCAACGGCGGCGGCTGTGACGGTGACGGACCCAATGGGGAAGGAAGCGGTGTTGGCGTGGTTCAGAGGGGAGTTCGCGGCGGCGAACGCGATTATTGATGCGCTGTGTGGACATCTGGCGCAGGTGAGTGACGATGGAGGATCGGAGTACGAATCAGTGTTCGCTGCGATTCATAGACGGCGGCTGAATTGGATTCCGGTCCTGCAAATGCAGAAGTATCATCCGATCGCTGACGTTGCCTTGGAGCTACGGAAAGTGACGGCGGAGAAAAAGAGAAAGAAGAAGAATCGGGATGAGGAAGAGGAGGAGCAGAAAGGAGGCGATGAGGCGGCGGTAGTGGTGGTCGAGGACGACGGCGACGGCGATGGCGACGGTGATGTCGAAATGGAGGAAAAGAAGAACGAGATTAAGAAAATGAAGGAAGAGGAGGAAAATGACGGAAAGATTTGTTCGGATGAGAAGGAAATCGTCGAAGAGACAACGATCGAGATTAACGAAACCGATGGCGGAAGAAATGAAGCTCTTCTGGATCCAATCGAAGAGGAGGATTCAATTCGAAGCGAAATAACTGATTCAGATCTCTAA

Protein sequence

MAAGATDRARPVVVPTAAAVTVTDPMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDDGGSEYESVFAAIHRRRLNWIPVLQMQKYHPIADVALELRKVTAEKKRKKKNRDEEEEEQKGGDEAAVVVVEDDGDGDGDGDVEMEEKKNEIKKMKEEEENDGKICSDEKEIVEETTIEINETDGGRNEALLDPIEEEDSIRSEITDSDL

Homology

[Close]

BLAST of CmoCh02G017990 vs. ExPASy Swiss-Prot
Match: Q9ZT92 (RNA demethylase ALKBH10B OS=Arabidopsis thaliana OX=3702 GN=ALKBH10B PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.4e-27
Identity = 85/183 (46.45%), Postives = 113/183 (61.75%), Query Frame = 0


Query: 6   TDRARPVVVPTAAAVTVTDPMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDD-GGSEY 65
           T +A  V V    A  V++ +GK+A+++WFRGEFAAANAIIDA+C HL    +   GSEY
Sbjct: 25  TAKAVSVPVQVPPATVVSEGLGKDALISWFRGEFAAANAIIDAMCSHLRIAEEAVSGSEY 84

Query: 66  ESVFAAIHRRRLNWIPVLQMQKYHPIADVALELRKVTAEKKRKKKNRDEEEEEQKGGDEA 125
           E+VFAAIHRRRLNWIPVLQMQKYH IA+VA+EL+KV A+K    K +  EEE ++  D  
Sbjct: 85  EAVFAAIHRRRLNWIPVLQMQKYHSIAEVAIELQKVAAKKAEDLKQKKTEEEAEE--DLK 144

Query: 126 AVVVVEDDGDGDGDGDVEMEEKKNEIKKMKEEEENDGKICSDEKEIVEETTIEINETDGG 185
            VV  E+            EE K E    ++  END    + + E VE+ +   + TD G
Sbjct: 145 EVVATEE------------EEVKKECFNGEKVTEND---VNGDVEDVEDDSPTSDITDSG 190

Query: 186 RNE 188
            ++
Sbjct: 205 SHQ 190

[Close]

BLAST of CmoCh02G017990 vs. ExPASy TrEMBL
Match: A0A6J1H8J8 (uncharacterized protein LOC111461049 OS=Cucurbita moschata OX=3662 GN=LOC111461049 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 6.6e-103
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MAAGATDRARPVVVPTAAAVTVTDPMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDDG 60
           MAAGATDRARPVVVPTAAAVTVTDPMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDDG
Sbjct: 1   MAAGATDRARPVVVPTAAAVTVTDPMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDDG 60

Query: 61  GSEYESVFAAIHRRRLNWIPVLQMQKYHPIADVALELRKVTAEKKRKKKNRDEEEEEQKG 120
           GSEYESVFAAIHRRRLNWIPVLQMQKYHPIADVALELRKVTAEKKRKKKNRDEEEEEQKG
Sbjct: 61  GSEYESVFAAIHRRRLNWIPVLQMQKYHPIADVALELRKVTAEKKRKKKNRDEEEEEQKG 120

Query: 121 GDEAAVVVVEDDGDGDGDGDVEMEEKKNEIKKMKEEEENDGKICSDEKEIVEETTIEINE 180
           GDEAAVVVVEDDGDGDGDGDVEMEEKKNEIKKMKEEEENDGKICSDEKEIVEETTIEINE
Sbjct: 121 GDEAAVVVVEDDGDGDGDGDVEMEEKKNEIKKMKEEEENDGKICSDEKEIVEETTIEINE 180

Query: 181 TDGGRNEALLDPIEEEDSIRSEITDS 207
           TDGGRNEALLDPIEEEDSIRSEITDS
Sbjct: 181 TDGGRNEALLDPIEEEDSIRSEITDS 206

[Close]

BLAST of CmoCh02G017990 vs. ExPASy TrEMBL
Match: A0A6J1KZQ2 (uncharacterized protein LOC111497786 OS=Cucurbita maxima OX=3661 GN=LOC111497786 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.9e-97
Identity = 198/206 (96.12%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MAAGATDRARPVVVPTAAAVTVTDPMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDDG 60
           MAAGATDRARPVVVPTAAAVTVTDPMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDDG
Sbjct: 1   MAAGATDRARPVVVPTAAAVTVTDPMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDDG 60

Query: 61  GSEYESVFAAIHRRRLNWIPVLQMQKYHPIADVALELRKVTAEKKRKKKNRDEEEEEQKG 120
           GSEYESVFAAIHRRRLNWIPVLQMQKYHPIADVALELRKVTAEKK+KKKN+DEEEEE+KG
Sbjct: 61  GSEYESVFAAIHRRRLNWIPVLQMQKYHPIADVALELRKVTAEKKKKKKNQDEEEEEEKG 120

Query: 121 GDEAAVVVVEDDGDGDGDGDVEMEEKKNEIKKMKEEEENDGKICSDEKEIVEETTIEINE 180
           GDEAAVVVVED  DGDGDGDVEMEEKKNEIKKMKEEEEN+GKICSDEKEIVEE +IEINE
Sbjct: 121 GDEAAVVVVED--DGDGDGDVEMEEKKNEIKKMKEEEENEGKICSDEKEIVEEMSIEINE 180

Query: 181 TDGGRNEALLDPIEEEDSIRSEITDS 207
           TDGGRNEALLDPIEEEDSIRSEITDS
Sbjct: 181 TDGGRNEALLDPIEEEDSIRSEITDS 204

[Close]

BLAST of CmoCh02G017990 vs. ExPASy TrEMBL
Match: A0A0A0K544 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392330 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.9e-63
Identity = 152/217 (70.05%), Postives = 172/217 (79.26%), Query Frame = 0


Query: 1   MAAGATDRARPVVVPTAAAVTVTDPMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDDG 60
           MAAGAT+RARPVV+P AAA+TVTD + K+AVL WFRGEFAAANAIIDALCGH+AQVS+ G
Sbjct: 3   MAAGATERARPVVMPAAAAMTVTDTLAKDAVLGWFRGEFAAANAIIDALCGHMAQVSESG 62

Query: 61  GSEYESVFAAIHRRRLNWIPVLQMQKYHPIADVALELRKVTAEKKRKKKNRDEEEEEQKG 120
           GSEYE+VF AIHRRRLNWIPVLQMQKYHPIADVA+ELRKVTA KK KK N+++EEE + G
Sbjct: 63  GSEYEAVFGAIHRRRLNWIPVLQMQKYHPIADVAVELRKVTAAKK-KKMNKNQEEEVKGG 122

Query: 121 GDEAAVVVVEDDGDGDGDGDVEMEEKKNEIKKMKEEEENDGKICSDEKEIVEETT----- 180
           G+  AV V   +GDGDG GDVEM     E+KKM EE+E +  +  DEKEIVEE T     
Sbjct: 123 GEVEAVEVALAEGDGDGYGDVEM-----EVKKMSEEDEKE-FVEEDEKEIVEEETNDGKL 182

Query: 181 ------IEINETDGGRNEALLDPIEEEDSIRSEITDS 207
                 IEINE DGGRNE +L PIEEEDSI SEITDS
Sbjct: 183 KIEEISIEINEIDGGRNE-VLAPIEEEDSIGSEITDS 211

[Close]

BLAST of CmoCh02G017990 vs. ExPASy TrEMBL
Match: A0A5D3DBI8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00370 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 5.7e-62
Identity = 147/209 (70.33%), Postives = 163/209 (77.99%), Query Frame = 0


Query: 1   MAAGATDRARPVVVPTAAAVTVTDPMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDDG 60
           MAAGATDR RPVV+P AAA+TVTD + K+AVL WFRGEFAAANAIIDALCGHLAQVS+ G
Sbjct: 3   MAAGATDRGRPVVMPAAAAMTVTDTLAKDAVLGWFRGEFAAANAIIDALCGHLAQVSESG 62

Query: 61  GSEYESVFAAIHRRRLNWIPVLQMQKYHPIADVALELRKVTAEKKRKKKNRDEEEEEQKG 120
           GSEYE+VF AIHRRRLNWIPVLQMQKYHPIADVA+ELRKVTA KK+K     EEEEE KG
Sbjct: 63  GSEYEAVFGAIHRRRLNWIPVLQMQKYHPIADVAVELRKVTAAKKKKMNKNQEEEEEVKG 122

Query: 121 GDEAAVVVVEDDGDGDGDGDVEMEEKK---NEIKKMKEEEENDGKICSDEKEIVEETTIE 180
           G+  AV V       +GDGDVEME KK    + K+  EEE NDG +       +EE +IE
Sbjct: 123 GEVEAVEVAA--AVAEGDGDVEMEGKKMSEEDEKEFVEEETNDGNL------KIEEISIE 182

Query: 181 INETDGGRNEALLDPIEEEDSIRSEITDS 207
           INE DGGRNE +L PIEEEDSI SEITDS
Sbjct: 183 INEIDGGRNE-VLAPIEEEDSIGSEITDS 202

[Close]

BLAST of CmoCh02G017990 vs. ExPASy TrEMBL
Match: A0A1S3BQT2 (uncharacterized protein LOC103492703 OS=Cucumis melo OX=3656 GN=LOC103492703 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 5.7e-62
Identity = 147/209 (70.33%), Postives = 163/209 (77.99%), Query Frame = 0


Query: 1   MAAGATDRARPVVVPTAAAVTVTDPMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDDG 60
           MAAGATDR RPVV+P AAA+TVTD + K+AVL WFRGEFAAANAIIDALCGHLAQVS+ G
Sbjct: 3   MAAGATDRGRPVVMPAAAAMTVTDTLAKDAVLGWFRGEFAAANAIIDALCGHLAQVSESG 62

Query: 61  GSEYESVFAAIHRRRLNWIPVLQMQKYHPIADVALELRKVTAEKKRKKKNRDEEEEEQKG 120
           GSEYE+VF AIHRRRLNWIPVLQMQKYHPIADVA+ELRKVTA KK+K     EEEEE KG
Sbjct: 63  GSEYEAVFGAIHRRRLNWIPVLQMQKYHPIADVAVELRKVTAAKKKKMNKNQEEEEEVKG 122

Query: 121 GDEAAVVVVEDDGDGDGDGDVEMEEKK---NEIKKMKEEEENDGKICSDEKEIVEETTIE 180
           G+  AV V       +GDGDVEME KK    + K+  EEE NDG +       +EE +IE
Sbjct: 123 GEVEAVEVAA--AVAEGDGDVEMEGKKMSEEDEKEFVEEETNDGNL------KIEEISIE 182

Query: 181 INETDGGRNEALLDPIEEEDSIRSEITDS 207
           INE DGGRNE +L PIEEEDSI SEITDS
Sbjct: 183 INEIDGGRNE-VLAPIEEEDSIGSEITDS 202

[Close]

BLAST of CmoCh02G017990 vs. TAIR 10
Match: AT4G02940.1 (oxidoreductase, 2OG-Fe(II) oxygenase family protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.4e-28
Identity = 85/183 (46.45%), Postives = 113/183 (61.75%), Query Frame = 0


Query: 6   TDRARPVVVPTAAAVTVTDPMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDD-GGSEY 65
           T +A  V V    A  V++ +GK+A+++WFRGEFAAANAIIDA+C HL    +   GSEY
Sbjct: 25  TAKAVSVPVQVPPATVVSEGLGKDALISWFRGEFAAANAIIDAMCSHLRIAEEAVSGSEY 84

Query: 66  ESVFAAIHRRRLNWIPVLQMQKYHPIADVALELRKVTAEKKRKKKNRDEEEEEQKGGDEA 125
           E+VFAAIHRRRLNWIPVLQMQKYH IA+VA+EL+KV A+K    K +  EEE ++  D  
Sbjct: 85  EAVFAAIHRRRLNWIPVLQMQKYHSIAEVAIELQKVAAKKAEDLKQKKTEEEAEE--DLK 144

Query: 126 AVVVVEDDGDGDGDGDVEMEEKKNEIKKMKEEEENDGKICSDEKEIVEETTIEINETDGG 185
            VV  E+            EE K E    ++  END    + + E VE+ +   + TD G
Sbjct: 145 EVVATEE------------EEVKKECFNGEKVTEND---VNGDVEDVEDDSPTSDITDSG 190

Query: 186 RNE 188
            ++
Sbjct: 205 SHQ 190

[Close]

BLAST of CmoCh02G017990 vs. TAIR 10
Match: AT2G48080.1 (oxidoreductase, 2OG-Fe(II) oxygenase family protein )

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-24
Identity = 56/97 (57.73%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 20  VTVTDPMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDDGGSEYESVFAAIHRRRLNWI 79
           V ++D   K+A+L WFRGEFAAANAIIDALC HL Q S  G ++YESV AA+HRRRLNWI
Sbjct: 15  VLLSDSAAKDAMLTWFRGEFAAANAIIDALCAHLMQAS-GGSAQYESVMAALHRRRLNWI 74

Query: 80  PVLQMQKYHPIADVALELRKVTAEKKRKKKNRDEEEE 117
           PVLQMQKYH I+ V L+L++  A+      + D +++
Sbjct: 75  PVLQMQKYHSISQVTLQLQQHLAKGFHHHLDDDHDDD 110

[Close]

BLAST of CmoCh02G017990 vs. TAIR 10
Match: AT1G14710.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 68.2 bits (165), Expect = 9.1e-12
Identity = 57/189 (30.16%), Postives = 99/189 (52.38%), Query Frame = 0


Query: 25  PMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDDGGSEYESVFAAIHRRRLNWIPVLQM 84
           P  ++  ++W R EFAAANAIID+LC HL  V D   +EYESV  +IH RRL W  VL M
Sbjct: 26  PDERDGFISWLRAEFAAANAIIDSLCQHLQAVGDH--NEYESVIGSIHHRRLAWSQVLTM 85

Query: 85  QKYHPIADVALELRKVTAEKKRK---KKNRDEEEEEQKGGDEAAVVVVEDDGDGDG---- 144
           Q++ P+ADV+  L+++  +++++   +++ + ++  + G   +     +  G G G    
Sbjct: 86  QQFFPVADVSYNLQQIAWKRQQQMPPQRHYNSDQVGKFGARRSGPGFNKHHGGGGGYRGA 145

Query: 145 DGDVEMEEKKNEIKKMKEEEENDGKICSDEKEIVEETTIEINETDGG---RNEALLDPIE 204
           D         N +   + E   + K+ SD K +    ++   + DG    R+++ ++   
Sbjct: 146 DSMARNGHNFNGVNSDRVEHREEAKLASDVKAL----SVAEEKRDGSEKPRSDSKVEKKL 205

[Close]

BLAST of CmoCh02G017990 vs. TAIR 10
Match: AT1G14710.2 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 68.2 bits (165), Expect = 9.1e-12
Identity = 57/189 (30.16%), Postives = 99/189 (52.38%), Query Frame = 0


Query: 25  PMGKEAVLAWFRGEFAAANAIIDALCGHLAQVSDDGGSEYESVFAAIHRRRLNWIPVLQM 84
           P  ++  ++W R EFAAANAIID+LC HL  V D   +EYESV  +IH RRL W  VL M
Sbjct: 26  PDERDGFISWLRAEFAAANAIIDSLCQHLQAVGDH--NEYESVIGSIHHRRLAWSQVLTM 85

Query: 85  QKYHPIADVALELRKVTAEKKRK---KKNRDEEEEEQKGGDEAAVVVVEDDGDGDG---- 144
           Q++ P+ADV+  L+++  +++++   +++ + ++  + G   +     +  G G G    
Sbjct: 86  QQFFPVADVSYNLQQIAWKRQQQMPPQRHYNSDQVGKFGARRSGPGFNKHHGGGGGYRGA 145

Query: 145 DGDVEMEEKKNEIKKMKEEEENDGKICSDEKEIVEETTIEINETDGG---RNEALLDPIE 204
           D         N +   + E   + K+ SD K +    ++   + DG    R+++ ++   
Sbjct: 146 DSMARNGHNFNGVNSDRVEHREEAKLASDVKAL----SVAEEKRDGSEKPRSDSKVEKKL 205

The following BLAST results are available for this feature:

BLAST of CmoCh02G017990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT92	3.4e-27	46.45	RNA demethylase ALKBH10B OS=Arabidopsis thaliana OX=3702 GN=ALKBH10B PE=1 SV=1	[more]

BLAST of CmoCh02G017990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8J8	6.6e-103	100.00	uncharacterized protein LOC111461049 OS=Cucurbita moschata OX=3662 GN=LOC1114610...	[more]
A0A6J1KZQ2	1.9e-97	96.12	uncharacterized protein LOC111497786 OS=Cucurbita maxima OX=3661 GN=LOC111497786...	[more]
A0A0A0K544	3.9e-63	70.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392330 PE=4 SV=1	[more]
A0A5D3DBI8	5.7e-62	70.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BQT2	5.7e-62	70.33	uncharacterized protein LOC103492703 OS=Cucumis melo OX=3656 GN=LOC103492703 PE=...	[more]

BLAST of CmoCh02G017990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02940.1	2.4e-28	46.45	oxidoreductase, 2OG-Fe(II) oxygenase family protein	[more]
AT2G48080.1	3.6e-24	57.73	oxidoreductase, 2OG-Fe(II) oxygenase family protein	[more]
AT1G14710.1	9.1e-12	30.16	hydroxyproline-rich glycoprotein family protein	[more]
AT1G14710.2	9.1e-12	30.16	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 90..119
None	No IPR available	COILS	Coil	Coil	coord: 140..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..180
None	No IPR available	PANTHER	PTHR31447:SF2	RNA DEMETHYLASE ALKBH10B	coord: 12..180
IPR044842	RNA demethylase ALKBH9B/ALKBH10B-like	PANTHER	PTHR31447	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED	coord: 12..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G017990.1	CmoCh02G017990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070988	demethylation
biological_process	GO:0006402	mRNA catabolic process
molecular_function	GO:0032451	demethylase activity
molecular_function	GO:0003729	mRNA binding