CmoCh02G017970 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh02G017970
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-H2 finger protein ATL16-like
Location	Cmo_Chr02: 10206595 .. 10207650 (+)
RNA-Seq Expression	CmoCh02G017970
Synteny	CmoCh02G017970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCAACCCAGAAAAGCCTCCATATATTTGAGTCCCCAGCTTTTGCATCGCTCACAAAGCAACAGATTTCAAGCTATCACTCACCATTTTCTAGTGTTTCAGATTCTGCTTCTCCAATTTTAGCTGTTGCAGTTCTGAGTGTGATGGGGACTGTTTTTTTGCTATTGGGTTACTACATTTTCATCAGCAAATGCTGTTCTAACTGGCACCATTTTAGTCTGCTGAGGCGGTTTTCGAGTTTTCATTCCCAACAGCATGAAGATCCTTTCATAGCTCTCTCACCAACCATGTGGAATCGCGGGCTCGAACAGTCGATGATTGGCCAAATCCCAACTTTTCGATTCGAGAAAGACGATGAAGGTAGTGGTCTCTATGGCTGCGTGGTTTGTCTAAGCGAGTTTCAAGAGAACGAGACGTTGAGAGTTCTACCAAAATGTAGCCACACATTTCACTTGGACTGCATTGATGTCTGGCTGCAAAGCAACTCCAATTGCCCTCTTTGCAGAACAAGCATTTCAGGCACAACAAAGCCTCCAATTGATCACATTGTAGCTCCAAGCTCATCTCCTCAAAACTCTCAGCTCCTTTCCAACAGCCTAATGGGCAGTGATGAAGATTTTGTAGTCATTGAATTGGGTAGTGAAGATGAAGTTGTTTCCTCAACAGGGCAACAAGAAAGTACTATTTCAAGAGAAGCACTGGTTCAGCAGCCCAGATACCATTCTCCTAAAAAACTTGAGAACAAGGTTGGAAAATCCAAAACTCGGAAGTGTCACCATGTTTCAATCATGGGAGATGAGGGCATCAATGTTAGAGCAAAAGATGAACAGTTCTTCATCCAACCCATCAGAAGATCCTTTTCCATGGATTCTGCAGCTGATCAACAGCTTTACTTAACCGTTCAAATGATAATACATCAAGATAGGCAAATCAATGAGTCCAGTAGCAGTAGTAGTGCAGAAAATGACAGCAGAAACCGAAGATCTTTCTTCCCGTTTCGATCCGGACGAGGATTCAAAAACACGATTCTTCCACTCGAGTCAGATATGTAA

mRNA sequence

ATGGAACCAACCCAGAAAAGCCTCCATATATTTGAGTCCCCAGCTTTTGCATCGCTCACAAAGCAACAGATTTCAAGCTATCACTCACCATTTTCTAGTGTTTCAGATTCTGCTTCTCCAATTTTAGCTGTTGCAGTTCTGAGTGTGATGGGGACTGTTTTTTTGCTATTGGGTTACTACATTTTCATCAGCAAATGCTGTTCTAACTGGCACCATTTTAGTCTGCTGAGGCGGTTTTCGAGTTTTCATTCCCAACAGCATGAAGATCCTTTCATAGCTCTCTCACCAACCATGTGGAATCGCGGGCTCGAACAGTCGATGATTGGCCAAATCCCAACTTTTCGATTCGAGAAAGACGATGAAGGTAGTGGTCTCTATGGCTGCGTGGTTTGTCTAAGCGAGTTTCAAGAGAACGAGACGTTGAGAGTTCTACCAAAATGTAGCCACACATTTCACTTGGACTGCATTGATGTCTGGCTGCAAAGCAACTCCAATTGCCCTCTTTGCAGAACAAGCATTTCAGGCACAACAAAGCCTCCAATTGATCACATTGTAGCTCCAAGCTCATCTCCTCAAAACTCTCAGCTCCTTTCCAACAGCCTAATGGGCAGTGATGAAGATTTTGTAGTCATTGAATTGGGTAGTGAAGATGAAGTTGTTTCCTCAACAGGGCAACAAGAAAGTACTATTTCAAGAGAAGCACTGGTTCAGCAGCCCAGATACCATTCTCCTAAAAAACTTGAGAACAAGGTTGGAAAATCCAAAACTCGGAAGTGTCACCATGTTTCAATCATGGGAGATGAGGGCATCAATGTTAGAGCAAAAGATGAACAGTTCTTCATCCAACCCATCAGAAGATCCTTTTCCATGGATTCTGCAGCTGATCAACAGCTTTACTTAACCGTTCAAATGATAATACATCAAGATAGGCAAATCAATGAGTCCAGTAGCAGTAGTAGTGCAGAAAATGACAGCAGAAACCGAAGATCTTTCTTCCCGTTTCGATCCGGACGAGGATTCAAAAACACGATTCTTCCACTCGAGTCAGATATGTAA

Coding sequence (CDS)

ATGGAACCAACCCAGAAAAGCCTCCATATATTTGAGTCCCCAGCTTTTGCATCGCTCACAAAGCAACAGATTTCAAGCTATCACTCACCATTTTCTAGTGTTTCAGATTCTGCTTCTCCAATTTTAGCTGTTGCAGTTCTGAGTGTGATGGGGACTGTTTTTTTGCTATTGGGTTACTACATTTTCATCAGCAAATGCTGTTCTAACTGGCACCATTTTAGTCTGCTGAGGCGGTTTTCGAGTTTTCATTCCCAACAGCATGAAGATCCTTTCATAGCTCTCTCACCAACCATGTGGAATCGCGGGCTCGAACAGTCGATGATTGGCCAAATCCCAACTTTTCGATTCGAGAAAGACGATGAAGGTAGTGGTCTCTATGGCTGCGTGGTTTGTCTAAGCGAGTTTCAAGAGAACGAGACGTTGAGAGTTCTACCAAAATGTAGCCACACATTTCACTTGGACTGCATTGATGTCTGGCTGCAAAGCAACTCCAATTGCCCTCTTTGCAGAACAAGCATTTCAGGCACAACAAAGCCTCCAATTGATCACATTGTAGCTCCAAGCTCATCTCCTCAAAACTCTCAGCTCCTTTCCAACAGCCTAATGGGCAGTGATGAAGATTTTGTAGTCATTGAATTGGGTAGTGAAGATGAAGTTGTTTCCTCAACAGGGCAACAAGAAAGTACTATTTCAAGAGAAGCACTGGTTCAGCAGCCCAGATACCATTCTCCTAAAAAACTTGAGAACAAGGTTGGAAAATCCAAAACTCGGAAGTGTCACCATGTTTCAATCATGGGAGATGAGGGCATCAATGTTAGAGCAAAAGATGAACAGTTCTTCATCCAACCCATCAGAAGATCCTTTTCCATGGATTCTGCAGCTGATCAACAGCTTTACTTAACCGTTCAAATGATAATACATCAAGATAGGCAAATCAATGAGTCCAGTAGCAGTAGTAGTGCAGAAAATGACAGCAGAAACCGAAGATCTTTCTTCCCGTTTCGATCCGGACGAGGATTCAAAAACACGATTCTTCCACTCGAGTCAGATATGTAA

Protein sequence

MEPTQKSLHIFESPAFASLTKQQISSYHSPFSSVSDSASPILAVAVLSVMGTVFLLLGYYIFISKCCSNWHHFSLLRRFSSFHSQQHEDPFIALSPTMWNRGLEQSMIGQIPTFRFEKDDEGSGLYGCVVCLSEFQENETLRVLPKCSHTFHLDCIDVWLQSNSNCPLCRTSISGTTKPPIDHIVAPSSSPQNSQLLSNSLMGSDEDFVVIELGSEDEVVSSTGQQESTISREALVQQPRYHSPKKLENKVGKSKTRKCHHVSIMGDEGINVRAKDEQFFIQPIRRSFSMDSAADQQLYLTVQMIIHQDRQINESSSSSSAENDSRNRRSFFPFRSGRGFKNTILPLESDM

Homology

[Close]

BLAST of CmoCh02G017970 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.3e-63
Identity = 151/350 (43.14%), Postives = 211/350 (60.29%), Query Frame = 0


Query: 32  SSVSDSASPILAVAVLSVMGTVFLLLGYYIFISKCCSNWHHFSLLRRFS-SFHSQQHEDP 91
           +S + ++ PILAVAV+ ++ T FLL+ YY+F+ KCC NWH   +L RFS S   +  +DP
Sbjct: 27  ASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDP 86

Query: 92  FIALSPTMWNRGLEQSMIGQIPTFRFEKD-DEGSGLY-------------GCVVCLSEFQ 151
            +  SP + +RGL++S+I  IP F+F+K  D+  G++              C VCLSEFQ
Sbjct: 87  LMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQ 146

Query: 152 ENETLRVLPKCSHTFHLDCIDVWLQSNSNCPLCRTSISGTTKPPIDHIVAPSSSPQNSQL 211
           + E LR++P CSH FH+DCIDVWLQ+N+NCPLCRT +S  T  P D + APS+SP+N  +
Sbjct: 147 DEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTSPENLVM 206

Query: 212 LSNSLMGSDEDFVVIELGS----------EDEVVSSTGQQESTISREALVQQPRYHSPKK 271
           L       + ++VVIELGS             +++   +  S        Q     SPKK
Sbjct: 207 LR-----GENEYVVIELGSSIGSDRDSPRHGRLLTGQERSNSGYLLNENTQNSISPSPKK 266

Query: 272 LENKVGKSKTRKCHHVSIMGDEGINV-RAKDEQF-FIQPIRRSFSMDSAADQQLYLTVQM 331
           L+      K RK H ++ MGDE I++ R KDEQF  IQPIRRS SMDS+AD+QLYL VQ 
Sbjct: 267 LDRGGLPRKFRKLHKMTSMGDECIDIRRGKDEQFGSIQPIRRSISMDSSADRQLYLAVQE 326

Query: 332 IIHQDRQI------NESSSSSSAENDSRNRRSFFPFRSGRGFKNTI-LPL 348
            I ++R++         SSSS   ++S+ +RSFF F S R  +++  LPL
Sbjct: 327 AIRKNREVLVVGDGGGCSSSSGNVSNSKVKRSFFSFGSSRRSRSSSKLPL 371

[Close]

BLAST of CmoCh02G017970 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 2.4e-62
Identity = 154/354 (43.50%), Postives = 202/354 (57.06%), Query Frame = 0


Query: 30  PFSSVSDSASPILAVAVLSVMGTVFLLLGYYIFISKCCSNWHHFSLLRRFSSFHSQQHED 89
           P +S S +  PILA+AV+ ++ T FLL+ YYIF+ KCC NWH   + RR         ++
Sbjct: 32  PRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRR---RRRSSDQN 91

Query: 90  PFIALSPTMWNRGLEQSMIGQIPTFRFEK-------DDEGSGLYGCVVCLSEFQENETLR 149
           P +  SP   NRGL++S I  IP F+F+K       +D+      C VCL+EFQE+E LR
Sbjct: 92  PLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLR 151

Query: 150 VLPKCSHTFHLDCIDVWLQSNSNCPLCRTSISGTTKPPIDHIVAPSSSPQNS------QL 209
           ++P C H FH+DCID+WLQ N+NCPLCRTS+S      +D I APSS  +NS       L
Sbjct: 152 IIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPHSRNRNL 211

Query: 210 LSNSLMGSDEDFVVIELGSEDEVVSSTGQQESTISREALVQQPRYHS------------- 269
               ++G D+DFVVIELG+     S+   +ES  + + L +Q R  S             
Sbjct: 212 EPGLVLGGDDDFVVIELGA-----SNGNNRESVRNIDFLTEQERVTSNEVSTGNSPKSVS 271

Query: 270 --PKKLENKVGKSKTRKCHHVSIMGDEGINVRAKDEQF-FIQPIRRSFSMDSAADQQLYL 329
             P K  N+    K RK H V+ MGDE I+ R KD  F  IQPIRRS SMDS+ D+QLYL
Sbjct: 272 PLPIKFGNRGMYKKERKFHKVTSMGDECIDTRGKDGHFGEIQPIRRSISMDSSVDRQLYL 331

Query: 330 TVQ-MIIHQDRQI-----NESSSSSSAENDSRNRRSFFPFRSGRGFK-NTILPL 348
            VQ  I  ++RQI      E SSSS   N    +R FF F S R  K ++ILP+
Sbjct: 332 AVQEEISRRNRQIPVAGDGEDSSSSGGGNSRVMKRCFFSFGSSRTSKSSSILPV 377

[Close]

BLAST of CmoCh02G017970 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.0e-25
Identity = 63/149 (42.28%), Postives = 88/149 (59.06%), Query Frame = 0


Query: 32  SSVSDSASPILAVAVLSVMGTVFLLLGYYIFISKCCSNWHHFSLLRRFSSFHSQQHEDPF 91
           SS S S SP+L +A++ ++ +  +L+ YY  ISK C   H  S     +  H+   E  F
Sbjct: 48  SSSSSSFSPLL-IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHN--GEGFF 107

Query: 92  IALSPTMWN-RGLEQSMIGQIPTFRFEKDDEGSGLYGCVVCLSEFQENETLRVLPKCSHT 151
            +      N  GL +SMI  I  ++++  D       C VCLSEF+ENE+LR+LPKC+H 
Sbjct: 108 SSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHA 167

Query: 152 FHLDCIDVWLQSNSNCPLCRTSISGTTKP 180
           FHL CID WL+S+SNCPLCR  ++G   P
Sbjct: 168 FHLPCIDTWLKSHSNCPLCRAFVTGVNNP 193

[Close]

BLAST of CmoCh02G017970 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 2.6e-24
Identity = 75/207 (36.23%), Postives = 109/207 (52.66%), Query Frame = 0


Query: 42  LAVAVLSVMGTVFLLLGYYIFISKCCSN---------WHHFSLLRRFSSFHSQQHEDPFI 101
           L +A+  +  T FLL  YY  +SK C+N              ++   +S      +DPF 
Sbjct: 61  LVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPFA 120

Query: 102 ALSPTMWNRGLEQSMIGQIPTFRFEKDDEGSGLYG--CVVCLSEFQENETLRVLPKCSHT 161
             S T    GL+ ++I +I  F+ +K   G  + G  C +CL EF E+E+LR+LPKC+HT
Sbjct: 121 LESST---AGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHT 180

Query: 162 FHLDCIDVWLQSNSNCPLCRTS-ISGTTKPPIDHIVAPSSSPQNSQLLSNSLMGSDEDFV 221
           FH+ CID WL+S+SNCPLCR   I  TT+ P  H+V  +      +  SN  +GS E  V
Sbjct: 181 FHVVCIDRWLKSHSNCPLCRAKIIVPTTQQPEHHVVVMNL----DRFTSN--VGSAEGNV 240

Query: 222 VIELGSEDEVVSSTGQQESTISREALV 237
           V++   E+  VS +    S  S   +V
Sbjct: 241 VVDDHREEVSVSISSHHPSWFSAADIV 258

[Close]

BLAST of CmoCh02G017970 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 7.6e-24
Identity = 76/224 (33.93%), Postives = 116/224 (51.79%), Query Frame = 0


Query: 33  SVSDSASPILAVAVLSVMGTVFLLLGYYIFISKCCSNWHHFS------LLRRFSSFHSQQ 92
           S S   SP+L +A++ ++ + F+L+ YY  ISK C    H S       + R SS ++ Q
Sbjct: 51  SSSSDFSPLL-IALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQ 110

Query: 93  HEDPFIALSPTMWNR--------GLEQSMIGQIPTFRFEKDDEGSGLYGCVVCLSEFQEN 152
             +       T  N+        GL++S+I  I  +++ K D       C VCLSEFQEN
Sbjct: 111 GTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQEN 170

Query: 153 ETLRVLPKCSHTFHLDCIDVWLQSNSNCPLCRTSISGTTKPPIDHIVAPSSSPQNSQLL- 212
           E+LR+LPKC+H FH+ CID WL+S+SNCPLCR  I  ++   I  +        N Q++ 
Sbjct: 171 ESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLT-------NQQIVT 230

Query: 213 -SNSLMGSDEDFVVIELGSEDEVVSSTGQQESTISREALVQQPR 241
            +NS+   D+  VV+ L  E+    +    E +  +   +Q  R
Sbjct: 231 ENNSISTGDDSVVVVNLDLENSRSRNETVNEGSTPKPPEMQDSR 266

[Close]

BLAST of CmoCh02G017970 vs. ExPASy TrEMBL
Match: A0A6J1ET78 (RING-H2 finger protein ATL16-like OS=Cucurbita moschata OX=3662 GN=LOC111437354 PE=4 SV=1)

HSP 1 Score: 695.3 bits (1793), Expect = 1.3e-196
Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 0


Query: 1   MEPTQKSLHIFESPAFASLTKQQISSYHSPFSSVSDSASPILAVAVLSVMGTVFLLLGYY 60
           MEPTQKSLHIFESPAFASLTKQQISSYHSPFSSVSDSASPILAVAVLSVMGTVFLLLGYY
Sbjct: 1   MEPTQKSLHIFESPAFASLTKQQISSYHSPFSSVSDSASPILAVAVLSVMGTVFLLLGYY 60

Query: 61  IFISKCCSNWHHFSLLRRFSSFHSQQHEDPFIALSPTMWNRGLEQSMIGQIPTFRFEKDD 120
           IFISKCCSNWHHFSLLRRFSSFHSQQHEDPFIALSPTMWNRGLEQSMIGQIPTFRFEKDD
Sbjct: 61  IFISKCCSNWHHFSLLRRFSSFHSQQHEDPFIALSPTMWNRGLEQSMIGQIPTFRFEKDD 120

Query: 121 EGSGLYGCVVCLSEFQENETLRVLPKCSHTFHLDCIDVWLQSNSNCPLCRTSISGTTKPP 180
           EGSGLYGCVVCLSEFQENETLRVLPKCSHTFHLDCIDVWLQSNSNCPLCRTSISGTTKPP
Sbjct: 121 EGSGLYGCVVCLSEFQENETLRVLPKCSHTFHLDCIDVWLQSNSNCPLCRTSISGTTKPP 180

Query: 181 IDHIVAPSSSPQNSQLLSNSLMGSDEDFVVIELGSEDEVVSSTGQQESTISREALVQQPR 240
           IDHIVAPSSSPQNSQLLSNSLMGSDEDFVVIELGSEDEVVSSTGQQESTISREALVQQPR
Sbjct: 181 IDHIVAPSSSPQNSQLLSNSLMGSDEDFVVIELGSEDEVVSSTGQQESTISREALVQQPR 240

Query: 241 YHSPKKLENKVGKSKTRKCHHVSIMGDEGINVRAKDEQFFIQPIRRSFSMDSAADQQLYL 300
           YHSPKKLENKVGKSKTRKCHHVSIMGDEGINVRAKDEQFFIQPIRRSFSMDSAADQQLYL
Sbjct: 241 YHSPKKLENKVGKSKTRKCHHVSIMGDEGINVRAKDEQFFIQPIRRSFSMDSAADQQLYL 300

Query: 301 TVQMIIHQDRQINESSSSSSAENDSRNRRSFFPFRSGRGFKNTILPLESDM 352
           TVQMIIHQDRQINESSSSSSAENDSRNRRSFFPFRSGRGFKNTILPLESDM
Sbjct: 301 TVQMIIHQDRQINESSSSSSAENDSRNRRSFFPFRSGRGFKNTILPLESDM 351

[Close]

BLAST of CmoCh02G017970 vs. ExPASy TrEMBL
Match: A0A6J1K6J7 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111491128 PE=4 SV=1)

HSP 1 Score: 682.9 bits (1761), Expect = 6.8e-193
Identity = 345/351 (98.29%), Postives = 346/351 (98.58%), Query Frame = 0


Query: 1   MEPTQKSLHIFESPAFASLTKQQISSYHSPFSSVSDSASPILAVAVLSVMGTVFLLLGYY 60
           MEPTQKSLHIFESPAF SLTKQQISSYHSPFSSVSDSASPILAVAVLSVMGTV LLLGYY
Sbjct: 1   MEPTQKSLHIFESPAFESLTKQQISSYHSPFSSVSDSASPILAVAVLSVMGTVLLLLGYY 60

Query: 61  IFISKCCSNWHHFSLLRRFSSFHSQQHEDPFIALSPTMWNRGLEQSMIGQIPTFRFEKDD 120
           IFI+KCCSNWHHFSLLRRFSSFHSQQHEDPFIALSPTMWNRGLEQSMIGQIPTFRFE DD
Sbjct: 61  IFITKCCSNWHHFSLLRRFSSFHSQQHEDPFIALSPTMWNRGLEQSMIGQIPTFRFEGDD 120

Query: 121 EGSGLYGCVVCLSEFQENETLRVLPKCSHTFHLDCIDVWLQSNSNCPLCRTSISGTTKPP 180
           EGSGLYGCVVCLSEFQENE LRVLPKCSHTFHLDCIDVWLQSNSNCPLCRTSISGTTKPP
Sbjct: 121 EGSGLYGCVVCLSEFQENEMLRVLPKCSHTFHLDCIDVWLQSNSNCPLCRTSISGTTKPP 180

Query: 181 IDHIVAPSSSPQNSQLLSNSLMGSDEDFVVIELGSEDEVVSSTGQQESTISREALVQQPR 240
           IDHIVAPSSSPQNSQLLSNSLMGSDEDFVVIELG EDEVVSSTGQQESTISREALVQQPR
Sbjct: 181 IDHIVAPSSSPQNSQLLSNSLMGSDEDFVVIELGREDEVVSSTGQQESTISREALVQQPR 240

Query: 241 YHSPKKLENKVGKSKTRKCHHVSIMGDEGINVRAKDEQFFIQPIRRSFSMDSAADQQLYL 300
           YHSPKKLENKVGKSKTRKCHHVSIMGDEGINVRAKDEQFFIQPIRRSFSMDSAADQQLYL
Sbjct: 241 YHSPKKLENKVGKSKTRKCHHVSIMGDEGINVRAKDEQFFIQPIRRSFSMDSAADQQLYL 300

Query: 301 TVQMIIHQDRQINESSSSSSAENDSRNRRSFFPFRSGRGFKNTILPLESDM 352
           TVQMIIHQDRQINESSSSSSAENDSRNRRSFFPFRSGRGFKNTILPLESDM
Sbjct: 301 TVQMIIHQDRQINESSSSSSAENDSRNRRSFFPFRSGRGFKNTILPLESDM 351

[Close]

BLAST of CmoCh02G017970 vs. ExPASy TrEMBL
Match: A0A6J1CXJ5 (RING-H2 finger protein ATL16-like OS=Momordica charantia OX=3673 GN=LOC111015355 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 2.2e-146
Identity = 262/299 (87.63%), Postives = 278/299 (92.98%), Query Frame = 0


Query: 54  FLLLGYYIFISKCCSNWHHFSLLRRFSSFHSQQHEDPFIALSPTMWNRGLEQSMIGQIPT 113
           FLLLGYYIFI+KCCSNWH FSLLRRFSSFH+QQHEDPFIALSPTMWNRGLE+SMI +IP 
Sbjct: 226 FLLLGYYIFINKCCSNWHQFSLLRRFSSFHTQQHEDPFIALSPTMWNRGLEESMIREIPA 285

Query: 114 FRFEKDDEGSGLYGCVVCLSEFQENETLRVLPKCSHTFHLDCIDVWLQSNSNCPLCRTSI 173
           F+FE+D  G G+YGCVVCLSEFQ++E LRVLPKCSHTFHLDCID+WLQSNSNCPLCRTSI
Sbjct: 286 FQFERDGGGRGIYGCVVCLSEFQDDEMLRVLPKCSHTFHLDCIDIWLQSNSNCPLCRTSI 345

Query: 174 SGTTKPPIDHIVAPSSSPQNSQLLSNSLMGSDEDFVVIELGSEDEVVSSTGQQESTISRE 233
           SGTTKPPIDHIVAPSSSPQNSQLLSNSLMGSDEDFVVIELG EDEVVSS GQQE T+SRE
Sbjct: 346 SGTTKPPIDHIVAPSSSPQNSQLLSNSLMGSDEDFVVIELGGEDEVVSSAGQQERTVSRE 405

Query: 234 ALV-QQPRYHSPKKLENKVGKSKTRKCHHVSIMGDEGINVRAKDEQFFIQPIRRSFSMDS 293
            LV QQPR HSPKK ENKVGKSKTRKCHHVSIMGDEGINVR KD+QFFIQPIRRSFSMDS
Sbjct: 406 VLVQQQPRNHSPKKFENKVGKSKTRKCHHVSIMGDEGINVREKDDQFFIQPIRRSFSMDS 465

Query: 294 AADQQLYLTVQMIIHQDRQINESSSSSSAENDSRNRRSFFPFRSGRGFKNTILPLESDM 352
           AADQQLYLTVQMIIHQ  QI E SSS++AE+DSRNRRSF PFRSGRGFKN ILPLESD+
Sbjct: 466 AADQQLYLTVQMIIHQGSQITE-SSSTTAESDSRNRRSFLPFRSGRGFKNAILPLESDL 523

[Close]

BLAST of CmoCh02G017970 vs. ExPASy TrEMBL
Match: A0A0A0L809 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G393910 PE=4 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 2.4e-145
Identity = 281/355 (79.15%), Postives = 300/355 (84.51%), Query Frame = 0


Query: 1   MEPTQKSLHIFESPAFASLTKQQI-SSYHSPFSSVSDSASPILAVAVLSVMGTVFLLLGY 60
           ME TQK+LH FE  AF  +  QQI +SY S FS+VSDSASP+LAV +LSVMGT FLLL Y
Sbjct: 1   MESTQKTLHSFEFQAFLPIKDQQIPTSYRSSFSTVSDSASPVLAVVILSVMGTAFLLLSY 60

Query: 61  YIFISKCCSNWHHFSLLRRFSSFHS-QQHEDPFIALSP-TMWNRGLEQSMIGQIPTFRFE 120
           YIFI+KCC N H FSLLRRFSSF + QQ EDPFIALSP TMWN GLE+SMI QIP FRFE
Sbjct: 61  YIFITKCCYNCHQFSLLRRFSSFLTPQQREDPFIALSPTTMWNCGLEESMIRQIPAFRFE 120

Query: 121 KDDEGSGLYGCVVCLSEFQENETLRVLPKCSHTFHLDCIDVWLQSNSNCPLCRTSISGTT 180
           +D E SG+YGCVVCLSEFQENE LRVLPKCSHTFHLDCID+WLQSNSNCPLCRTSISG T
Sbjct: 121 RDGEHSGIYGCVVCLSEFQENEMLRVLPKCSHTFHLDCIDIWLQSNSNCPLCRTSISGIT 180

Query: 181 KPPIDHIVAPSSSPQNSQLLSNSLMGSDEDFVVIELGSEDEVVSSTGQQESTISREALVQ 240
           KPPID  VAPSSSPQNSQLLSN LMGSDEDFVVIELGSEDEVV S GQQE   SRE LVQ
Sbjct: 181 KPPIDQTVAPSSSPQNSQLLSNGLMGSDEDFVVIELGSEDEVVFSEGQQEGNASREVLVQ 240

Query: 241 QPRYHSPKKLENKVGKSKTRKCHHVSIMGDEGINVRAKDEQFFIQPIRRSFSMDSAADQQ 300
           Q    + KK ENK+ K KTRKCHHVSIMGDEGI+VR KD+QFF QPIRRSFSMDSAADQQ
Sbjct: 241 Q----TSKKTENKIRKPKTRKCHHVSIMGDEGIDVREKDDQFFTQPIRRSFSMDSAADQQ 300

Query: 301 LYLTVQMIIHQDRQINESSSSSS-AENDSRNRRSFFPFRSGRGFKNTILPLESDM 352
           LYLTV+MIIHQ RQI  SSSSSS AE+DSRNRRSF P RSGRG KN ILPLESD+
Sbjct: 301 LYLTVEMIIHQGRQITRSSSSSSGAESDSRNRRSFLPSRSGRGCKNAILPLESDL 351

[Close]

BLAST of CmoCh02G017970 vs. ExPASy TrEMBL
Match: A0A5A7T7A7 (RING-H2 finger protein ATL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00990 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 2.2e-114
Identity = 216/255 (84.71%), Postives = 225/255 (88.24%), Query Frame = 0


Query: 98  MWNRGLEQSMIGQIPTFRFEKDDEGSGLYGCVVCLSEFQENETLRVLPKCSHTFHLDCID 157
           MWNRGLE+SMI QIP FRFE+D E SG+YGCVVCLSEFQENE LR LPKCSHTFHLDCID
Sbjct: 1   MWNRGLEESMIRQIPAFRFERDGEHSGIYGCVVCLSEFQENEMLRALPKCSHTFHLDCID 60

Query: 158 VWLQSNSNCPLCRTSISGTTKPPIDHIVAPSSSPQNSQLLSNSLMGSDEDFVVIELGSED 217
           +WLQSNSNCPLCRTSISG TKPPI  IVAPSSSPQNSQLLSNSLMGSDEDFVVIELGSED
Sbjct: 61  IWLQSNSNCPLCRTSISGITKPPIHQIVAPSSSPQNSQLLSNSLMGSDEDFVVIELGSED 120

Query: 218 EVVSSTGQQESTISREALVQQPRYHSPKKLENKVGKSKTRKCHHVSIMGDEGINVRAKDE 277
           EVV S GQQE   SR   VQQ    +PKK ENK+GK KTRKCHHVSIMGDEGI+VR KD+
Sbjct: 121 EVVFSEGQQEGNASRNVPVQQ----TPKKTENKIGKPKTRKCHHVSIMGDEGIDVREKDD 180

Query: 278 QFFIQPIRRSFSMDSAADQQLYLTVQMIIHQDRQINE-SSSSSSAENDSRNRRSFFPFRS 337
           QFF QPIRRSFSMDSAADQQLYLTVQMIIHQ RQI E SSSSSSAE+DSRNRRSFFPFRS
Sbjct: 181 QFFTQPIRRSFSMDSAADQQLYLTVQMIIHQGRQITESSSSSSSAESDSRNRRSFFPFRS 240

Query: 338 GRGFKNTILPLESDM 352
           GRG KN ILPLESDM
Sbjct: 241 GRGCKNAILPLESDM 251

[Close]

BLAST of CmoCh02G017970 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 245.0 bits (624), Expect = 9.2e-65
Identity = 151/350 (43.14%), Postives = 211/350 (60.29%), Query Frame = 0


Query: 32  SSVSDSASPILAVAVLSVMGTVFLLLGYYIFISKCCSNWHHFSLLRRFS-SFHSQQHEDP 91
           +S + ++ PILAVAV+ ++ T FLL+ YY+F+ KCC NWH   +L RFS S   +  +DP
Sbjct: 27  ASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDP 86

Query: 92  FIALSPTMWNRGLEQSMIGQIPTFRFEKD-DEGSGLY-------------GCVVCLSEFQ 151
            +  SP + +RGL++S+I  IP F+F+K  D+  G++              C VCLSEFQ
Sbjct: 87  LMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQ 146

Query: 152 ENETLRVLPKCSHTFHLDCIDVWLQSNSNCPLCRTSISGTTKPPIDHIVAPSSSPQNSQL 211
           + E LR++P CSH FH+DCIDVWLQ+N+NCPLCRT +S  T  P D + APS+SP+N  +
Sbjct: 147 DEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTSPENLVM 206

Query: 212 LSNSLMGSDEDFVVIELGS----------EDEVVSSTGQQESTISREALVQQPRYHSPKK 271
           L       + ++VVIELGS             +++   +  S        Q     SPKK
Sbjct: 207 LR-----GENEYVVIELGSSIGSDRDSPRHGRLLTGQERSNSGYLLNENTQNSISPSPKK 266

Query: 272 LENKVGKSKTRKCHHVSIMGDEGINV-RAKDEQF-FIQPIRRSFSMDSAADQQLYLTVQM 331
           L+      K RK H ++ MGDE I++ R KDEQF  IQPIRRS SMDS+AD+QLYL VQ 
Sbjct: 267 LDRGGLPRKFRKLHKMTSMGDECIDIRRGKDEQFGSIQPIRRSISMDSSADRQLYLAVQE 326

Query: 332 IIHQDRQI------NESSSSSSAENDSRNRRSFFPFRSGRGFKNTI-LPL 348
            I ++R++         SSSS   ++S+ +RSFF F S R  +++  LPL
Sbjct: 327 AIRKNREVLVVGDGGGCSSSSGNVSNSKVKRSFFSFGSSRRSRSSSKLPL 371

[Close]

BLAST of CmoCh02G017970 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 240.7 bits (613), Expect = 1.7e-63
Identity = 154/354 (43.50%), Postives = 202/354 (57.06%), Query Frame = 0


Query: 30  PFSSVSDSASPILAVAVLSVMGTVFLLLGYYIFISKCCSNWHHFSLLRRFSSFHSQQHED 89
           P +S S +  PILA+AV+ ++ T FLL+ YYIF+ KCC NWH   + RR         ++
Sbjct: 32  PRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRR---RRRSSDQN 91

Query: 90  PFIALSPTMWNRGLEQSMIGQIPTFRFEK-------DDEGSGLYGCVVCLSEFQENETLR 149
           P +  SP   NRGL++S I  IP F+F+K       +D+      C VCL+EFQE+E LR
Sbjct: 92  PLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLR 151

Query: 150 VLPKCSHTFHLDCIDVWLQSNSNCPLCRTSISGTTKPPIDHIVAPSSSPQNS------QL 209
           ++P C H FH+DCID+WLQ N+NCPLCRTS+S      +D I APSS  +NS       L
Sbjct: 152 IIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPHSRNRNL 211

Query: 210 LSNSLMGSDEDFVVIELGSEDEVVSSTGQQESTISREALVQQPRYHS------------- 269
               ++G D+DFVVIELG+     S+   +ES  + + L +Q R  S             
Sbjct: 212 EPGLVLGGDDDFVVIELGA-----SNGNNRESVRNIDFLTEQERVTSNEVSTGNSPKSVS 271

Query: 270 --PKKLENKVGKSKTRKCHHVSIMGDEGINVRAKDEQF-FIQPIRRSFSMDSAADQQLYL 329
             P K  N+    K RK H V+ MGDE I+ R KD  F  IQPIRRS SMDS+ D+QLYL
Sbjct: 272 PLPIKFGNRGMYKKERKFHKVTSMGDECIDTRGKDGHFGEIQPIRRSISMDSSVDRQLYL 331

Query: 330 TVQ-MIIHQDRQI-----NESSSSSSAENDSRNRRSFFPFRSGRGFK-NTILPL 348
            VQ  I  ++RQI      E SSSS   N    +R FF F S R  K ++ILP+
Sbjct: 332 AVQEEISRRNRQIPVAGDGEDSSSSGGGNSRVMKRCFFSFGSSRTSKSSSILPV 377

[Close]

BLAST of CmoCh02G017970 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 115.9 bits (289), Expect = 6.4e-26
Identity = 63/149 (42.28%), Postives = 88/149 (59.06%), Query Frame = 0


Query: 32  SSVSDSASPILAVAVLSVMGTVFLLLGYYIFISKCCSNWHHFSLLRRFSSFHSQQHEDPF 91
           SS S S SP+L +A++ ++ +  +L+ YY  ISK C   H  S     +  H+   E  F
Sbjct: 48  SSSSSSFSPLL-IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHN--GEGFF 107

Query: 92  IALSPTMWN-RGLEQSMIGQIPTFRFEKDDEGSGLYGCVVCLSEFQENETLRVLPKCSHT 151
            +      N  GL +SMI  I  ++++  D       C VCLSEF+ENE+LR+LPKC+H 
Sbjct: 108 SSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHA 167

Query: 152 FHLDCIDVWLQSNSNCPLCRTSISGTTKP 180
           FHL CID WL+S+SNCPLCR  ++G   P
Sbjct: 168 FHLPCIDTWLKSHSNCPLCRAFVTGVNNP 193

[Close]

BLAST of CmoCh02G017970 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-25
Identity = 75/207 (36.23%), Postives = 109/207 (52.66%), Query Frame = 0


Query: 42  LAVAVLSVMGTVFLLLGYYIFISKCCSN---------WHHFSLLRRFSSFHSQQHEDPFI 101
           L +A+  +  T FLL  YY  +SK C+N              ++   +S      +DPF 
Sbjct: 61  LVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPFA 120

Query: 102 ALSPTMWNRGLEQSMIGQIPTFRFEKDDEGSGLYG--CVVCLSEFQENETLRVLPKCSHT 161
             S T    GL+ ++I +I  F+ +K   G  + G  C +CL EF E+E+LR+LPKC+HT
Sbjct: 121 LESST---AGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHT 180

Query: 162 FHLDCIDVWLQSNSNCPLCRTS-ISGTTKPPIDHIVAPSSSPQNSQLLSNSLMGSDEDFV 221
           FH+ CID WL+S+SNCPLCR   I  TT+ P  H+V  +      +  SN  +GS E  V
Sbjct: 181 FHVVCIDRWLKSHSNCPLCRAKIIVPTTQQPEHHVVVMNL----DRFTSN--VGSAEGNV 240

Query: 222 VIELGSEDEVVSSTGQQESTISREALV 237
           V++   E+  VS +    S  S   +V
Sbjct: 241 VVDDHREEVSVSISSHHPSWFSAADIV 258

[Close]

BLAST of CmoCh02G017970 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 112.8 bits (281), Expect = 5.4e-25
Identity = 76/224 (33.93%), Postives = 116/224 (51.79%), Query Frame = 0


Query: 33  SVSDSASPILAVAVLSVMGTVFLLLGYYIFISKCCSNWHHFS------LLRRFSSFHSQQ 92
           S S   SP+L +A++ ++ + F+L+ YY  ISK C    H S       + R SS ++ Q
Sbjct: 51  SSSSDFSPLL-IALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQ 110

Query: 93  HEDPFIALSPTMWNR--------GLEQSMIGQIPTFRFEKDDEGSGLYGCVVCLSEFQEN 152
             +       T  N+        GL++S+I  I  +++ K D       C VCLSEFQEN
Sbjct: 111 GTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQEN 170

Query: 153 ETLRVLPKCSHTFHLDCIDVWLQSNSNCPLCRTSISGTTKPPIDHIVAPSSSPQNSQLL- 212
           E+LR+LPKC+H FH+ CID WL+S+SNCPLCR  I  ++   I  +        N Q++ 
Sbjct: 171 ESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLT-------NQQIVT 230

Query: 213 -SNSLMGSDEDFVVIELGSEDEVVSSTGQQESTISREALVQQPR 241
            +NS+   D+  VV+ L  E+    +    E +  +   +Q  R
Sbjct: 231 ENNSISTGDDSVVVVNLDLENSRSRNETVNEGSTPKPPEMQDSR 266

The following BLAST results are available for this feature:

BLAST of CmoCh02G017970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSW9	1.3e-63	43.14	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
P93823	2.4e-62	43.50	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
Q9LF64	9.0e-25	42.28	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
P0C041	2.6e-24	36.23	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]
Q9SRQ8	7.6e-24	33.93	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]

BLAST of CmoCh02G017970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ET78	1.3e-196	100.00	RING-H2 finger protein ATL16-like OS=Cucurbita moschata OX=3662 GN=LOC111437354 ...	[more]
A0A6J1K6J7	6.8e-193	98.29	RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111491128 PE...	[more]
A0A6J1CXJ5	2.2e-146	87.63	RING-H2 finger protein ATL16-like OS=Momordica charantia OX=3673 GN=LOC111015355...	[more]
A0A0A0L809	2.4e-145	79.15	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G393910 P...	[more]
A0A5A7T7A7	2.2e-114	84.71	RING-H2 finger protein ATL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of CmoCh02G017970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43420.1	9.2e-65	43.14	RING/U-box superfamily protein	[more]
AT1G04360.1	1.7e-63	43.50	RING/U-box superfamily protein	[more]
AT5G17600.1	6.4e-26	42.28	RING/U-box superfamily protein	[more]
AT4G17905.1	1.9e-25	36.23	RING/U-box superfamily protein	[more]
AT3G03550.1	5.4e-25	33.93	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 128..169 e-value: 8.3E-8 score: 41.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 128..170 e-value: 3.0E-13 score: 49.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 128..170 score: 12.976127
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 102..178 e-value: 7.3E-23 score: 81.6
None	No IPR available	PIRSR	PIRSR004030-1	PIRSR004030-1	coord: 123..182 e-value: 0.0019 score: 16.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..332
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..327
None	No IPR available	PANTHER	PTHR46913:SF8	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..348
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 128..170 e-value: 1.26582E-17 score: 73.4901
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 107..174
IPR044600	RING-H2 finger protein ATL1/ATL16	PANTHER	PTHR46913	RING-H2 FINGER PROTEIN ATL16	coord: 1..348

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G017970.1	CmoCh02G017970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity